Basic Information

Insect: Drosophila paulistorum
Gene Symbol: -
Assembly: GCA_018152135.1
Location: JAECXG010000821.1:12767280-12772482[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00095 0.074 13.6 0.7 1 23 533 555 533 555 0.99

2 7 0.0076 0.59 10.8 3.7 1 23 563 585 563 585 0.97

3 7 0.00024 0.018 15.5 1.0 1 23 594 616 594 616 0.98

4 7 6.3e-06 0.00049 20.5 1.8 1 23 671 693 671 693 0.97

5 7 0.00069 0.053 14.1 1.0 1 23 701 725 701 725 0.98

6 7 1.9e-07 1.4e-05 25.3 2.1 1 23 731 753 731 753 0.98

7 7 0.00023 0.018 15.6 0.1 1 23 759 781 759 781 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00095	0.074	13.6	0.7	1	23	533	555	533	555	0.99
2	7	0.0076	0.59	10.8	3.7	1	23	563	585	563	585	0.97
3	7	0.00024	0.018	15.5	1.0	1	23	594	616	594	616	0.98
4	7	6.3e-06	0.00049	20.5	1.8	1	23	671	693	671	693	0.97
5	7	0.00069	0.053	14.1	1.0	1	23	701	725	701	725	0.98
6	7	1.9e-07	1.4e-05	25.3	2.1	1	23	731	753	731	753	0.98
7	7	0.00023	0.018	15.6	0.1	1	23	759	781	759	781	0.98

Sequence Information

Coding Sequence: ATGAGCGTGCTGGCATATACGCGTTCGAACGATGAGGAGATTTTTCGCCATTGCACAAAGGATTGCGGCGTGGTAACGGCCACCGAGGACTTTCAGTATTTTGCTCTAAGATGCATATTCTGCAGCGAGAAGTTTCTCTATTTCGATGCCTTCATTGGCCATTTGCAGACAATGCATCTGAGTGATGCGAATGGGAACGAGGGCAGTGAGGGGAATGAAGTGAGTGGTGGTGGCCAGAGATTAGGTGGTGGTGTTGGGATTAGCCAGCCAATGTCATTAGCGAGAGGACCAGCGCCGGGGGAACATGATGAGATTGAAGACTTAACCGATGCAGATACAGCTCTATTGGAGCCACAAATGGTGATCAAACAGGAGCTACAGGAATTGGGGAGCAGCGATGATGAGCAATCAGCATTAGCTGCAAATACAACAACAGATAAACGTCTGGCCGCCAATGTCCAGGCATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCATACTGCCGGAAACAAATATATTACCACATCCACGAATGAAGGTAACCAAACCAAGGCCAAAACAACACCAGCAGCAACAACAACAACGCCAGCGACGCCAACAGAAGCAAATGGGCGTCAAGAATGAGCCCCTCACAGCCGATGGCGATTCCTCGATGGATGACTATGGAGGCTACATGGATGATGACAATGACAATTCCACCGAGTATATGGAATACAGTGGTGGTCCCGGTTACAATGATTTAACCCAAGGTCACAGCATTTTGGGCACCGGCGGCGCTAACGATTTCCTTAGCTATGACGAAATGGTCGAGGAATCCCTTTTAGGTCGTGATCGTGAATTAACCATGCACATTAAGGATCGCAAAATGATACAATTCCTCATCCATTCATATCAACGGAATCCCTTCCTCTGGGACCACAGTCATCCGCAGTTCAGGGATCGTGTGAAACGCGCCAGATTTCTCGACTGGATTGTCCTAGAATTCAAAAGCCGCTTCAACATCTCATTGGCCAAGGATGCCATCACCAGGAAATGGGACAATCTTCGCACCGTTTACAAGCGTGAATGCAATCGGATGGCTCTGGAGAAAACGAACATCAGTACATTATGGTATTTCAAGGAACTGCATTTCCTCAATGAAGTCTATAGTTACAATTCCAAAATGTCTGATGCTGTGGTTAAGGAGACATCATATCGCCGTCGGTTTTCGGCCATTTGGAATGACACATCCACAGCGAAATTGTTGAGCATGGTGAAACGTTATCATTGCTTTTACAATCGCTTCGATCCCGATTATCGCAGCAAGGAGCGACGCGGCGAAGGCCTCCATCAGATGGCCATGGAGCTGCAACAATTGATCGATGTGACAACGATACAGATATCGAAACGTATATCCCAATTGCGTTTTGATTATTCCAAACAGAAGACAGAGCGCTTGAATTGTGAGCGCATGGGTAAAACGTTCATACCGAATTATATATATTACGATCAAATGAATTTCATGGACGACGATATACCGCCATTCAAGTGCCAGCATTGCGGTGAGATTGTGCAGACATTGCGCGAACTGGATCTGCATATGCTGACGCATCAGCCCAGTTTGGGTGGTGGCTACTACTGCAATATCTGTCACATACAATTCCACAATGCCGAGGAGTTTGAGACGCACAAGCAACTCCATTTGGGTGCTGGCAATGAGGTGAAATACAATTGTGAATTGTGTACGGCCAGTTTTCGTGAGAAATCCAACTACGATGAGCATCTGCGGCGACACAATGAGGAATTGTTTTTGCCCTCGCTGGGAATCAATCATAGCATCATGGAGGGGCATGAAGATGGGGATATTTCTGGCACTGCTGGCGATGGCGGCGACGATGGCGATGGTGATCAATTGATGACATCACCCGAATCGGGAGGCGGCCCTGGCAATAAACCATTCCCCTGCGACACCTGTCATCGGACGTTTGCCACATCGGGACATCTCAATGCCCATCGCATTGTGCATCAGGATGAGCGTGAGCGGTGCTACAAATGCGATTATCCGCAGTGCAACAAATCGTTTGTGGCCCGCAATAGCCTGTTCGAGCATTTGAAGCAACATTACAGCAACGAGGAATTCAAATGCGATATATGCGGCAAGAGTTTCAAGTCCACCAAGAATTTGCAGAATCACAAACAGATCCATGACAAGGTGAAGCGTTATGTATGCCAAATTTGCGGCTCGGCCTTTGCCCAGGCGGCGGGACTGTATCTTCATAAGCGTAGACATAATCGTCCAAATGGCACAACCGGTGCAGTTGGCCGCTCTGGCGGTAGTCGTTCGAGTCTATGA
Protein Sequence: MSVLAYTRSNDEEIFRHCTKDCGVVTATEDFQYFALRCIFCSEKFLYFDAFIGHLQTMHLSDANGNEGSEGNEVSGGGQRLGGGVGISQPMSLARGPAPGEHDEIEDLTDADTALLEPQMVIKQELQELGSSDDEQSALAANTTTDKRLAANVQASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILPETNILPHPRMKVTKPRPKQHQQQQQQRQRRQQKQMGVKNEPLTADGDSSMDDYGGYMDDDNDNSTEYMEYSGGPGYNDLTQGHSILGTGGANDFLSYDEMVEESLLGRDRELTMHIKDRKMIQFLIHSYQRNPFLWDHSHPQFRDRVKRARFLDWIVLEFKSRFNISLAKDAITRKWDNLRTVYKRECNRMALEKTNISTLWYFKELHFLNEVYSYNSKMSDAVVKETSYRRRFSAIWNDTSTAKLLSMVKRYHCFYNRFDPDYRSKERRGEGLHQMAMELQQLIDVTTIQISKRISQLRFDYSKQKTERLNCERMGKTFIPNYIYYDQMNFMDDDIPPFKCQHCGEIVQTLRELDLHMLTHQPSLGGGYYCNICHIQFHNAEEFETHKQLHLGAGNEVKYNCELCTASFREKSNYDEHLRRHNEELFLPSLGINHSIMEGHEDGDISGTAGDGGDDGDGDQLMTSPESGGGPGNKPFPCDTCHRTFATSGHLNAHRIVHQDERERCYKCDYPQCNKSFVARNSLFEHLKQHYSNEEFKCDICGKSFKSTKNLQNHKQIHDKVKRYVCQICGSAFAQAAGLYLHKRRHNRPNGTTGAVGRSGGSRSSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00556070;
90% Identity: iTF_00523922;
80% Identity: -