Dpav000541.1
Basic Information
- Insect
- Drosophila parvula
- Gene Symbol
- -
- Assembly
- GCA_018904695.1
- Location
- JAEIIG010037819.1:6158-7562[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.21 1.2e+03 -0.3 0.3 36 47 34 45 18 47 0.74 2 3 2.6e-06 0.015 15.4 0.6 19 48 47 77 41 82 0.85 3 3 6.3e-06 0.038 14.1 0.1 21 48 134 161 129 164 0.82
Sequence Information
- Coding Sequence
- ATGCTGCACGATAATGCCGATTCTGTGGACGACTGTGAGAAATTCAATGCAGTCCAACAGTTTAGCTGCAGCTTGGCCGGATGCCCGTACAGGACAAACAGAACCCACAACCTGGCGCGACACGAGGAACTGCACAAACGGCAGACGGAACAGAAGCCATTTGTCTGTCCCGTTTGTATCTACAACACTGATAAGATCTCCAACCTGAAACGGCATGTGGCCATCCGGCATCCCGAAGCGGCACCAGACCAGGAAGATCCAGATGAGCCGGAAATCCAGCTGCCTTCCACGGGGACCCGTAGCTGCAGGATTCACTGCCGGGTAATGGGATGTCGGTACGAAACGAATCGAGCGTACGATCTAAAACGCCACATGATGGTGCACAACAACGTGAAGAAAAGCCACAAGGAGTACAAGTGTTCTCTGTGCATGTACAGCTCTGATAGAAAGGCCAATCTTAAGAGGCACTTGGAGCTGAGACATTCTGGCATCGAGGACGCCATTAAGACAAAAGAAGAGCTAAATGAAGAGCAGGAGCGGCTGGAAGAGCTGGCGGAGCGCGATATTCTGCTCGAAGAGTTCATAGAACATCTTGACGAGGTGGGGCTTGAAATTGAGGAGAAGGTGGAGGTGGAACAGCCTCAGGCAGAGATTGAATATGTGTACGAGCAGCTGGATGAGGAGGAGGAAGAACCTCCCCTGATCACAATATCCCAGTCCAAGCCGCCGATACTCCAAGGAGACATAAGCGACAAGAAAGTGATAGCTGTCAATGTAAATGGTGAGTTGCGTTGGTTCCAGGCAATTGATCCGCCGCCTGGCGCGTCCTCAAAACTGCTATTGGCCTTGGGGGAGCAGGAACAGCAGTCAGCCTTGGCCCAGCAGCAAATGGACGAACTGGACGATGAGCTGGCCTTGTCCCTGGCCGAGCAAGATCAAGAGGAGGAGATGCTTGTGGAAATTCTAACCGAAGAGCAGTCGTCAGATAAGGATGTAACTTGGAGTATTCAGAATTGCAACCGAGAATGCAAACAGGTGAAGCAGAAGCAATCCAAAGCTGACATTGCCGGCGCAGATTTCCTTGATTGGTGGGACGATGGCAAGTATACAAATATGCAGAAAAACCAAACATTTCGGATTCTCCGGCGAAATCCCTCGAAAGCTAATGTGCAACGCATATTGCGCGACATTTATGACATTTACTACAAGCCCTTCAAAGAGGGTCGCAAGCAGTTCGAGGTGTTTCCGATCAAGGACTCGTGGCTATGCGCCACCCGGTTAACACGCATGCAGATCATTAAGGACATGTACTCAAAACAAGGCACATAA
- Protein Sequence
- MLHDNADSVDDCEKFNAVQQFSCSLAGCPYRTNRTHNLARHEELHKRQTEQKPFVCPVCIYNTDKISNLKRHVAIRHPEAAPDQEDPDEPEIQLPSTGTRSCRIHCRVMGCRYETNRAYDLKRHMMVHNNVKKSHKEYKCSLCMYSSDRKANLKRHLELRHSGIEDAIKTKEELNEEQERLEELAERDILLEEFIEHLDEVGLEIEEKVEVEQPQAEIEYVYEQLDEEEEEPPLITISQSKPPILQGDISDKKVIAVNVNGELRWFQAIDPPPGASSKLLLALGEQEQQSALAQQQMDELDDELALSLAEQDQEEEMLVEILTEEQSSDKDVTWSIQNCNRECKQVKQKQSKADIAGADFLDWWDDGKYTNMQKNQTFRILRRNPSKANVQRILRDIYDIYYKPFKEGRKQFEVFPIKDSWLCATRLTRMQIIKDMYSKQGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570036;
- 90% Identity
- iTF_00570036;
- 80% Identity
- iTF_00570036;