Dpav010383.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila parvula
Gene Symbol
RREB1
Assembly
GCA_018904695.1
Location
JAEIIG010012539.1:72335-78472[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.034 2.5 8.7 0.8 1 21 256 276 256 278 0.93
2 12 0.00031 0.024 15.1 0.2 1 23 288 310 288 310 0.98
3 12 7.6e-05 0.0057 17.1 7.3 1 23 316 338 316 338 0.98
4 12 0.59 45 4.8 3.8 2 19 573 590 573 592 0.97
5 12 0.024 1.8 9.2 0.1 1 23 734 756 734 756 0.97
6 12 1.2e-05 0.00087 19.6 0.7 1 23 766 788 766 788 0.99
7 12 0.00078 0.059 13.9 2.0 1 23 794 817 794 817 0.97
8 12 0.0028 0.21 12.1 2.0 1 23 1099 1122 1099 1122 0.95
9 12 8.1e-05 0.0061 17.0 0.3 2 23 1523 1544 1522 1544 0.97
10 12 0.14 10 6.8 6.3 1 23 1550 1573 1550 1573 0.97
11 12 0.0079 0.6 10.7 0.5 3 23 1788 1808 1786 1808 0.96
12 12 0.0013 0.099 13.2 4.8 1 23 1814 1836 1814 1836 0.99

Sequence Information

Coding Sequence
ATGCTCGCCACACAGCAACAACAACAACAGCAGCAGCAGTCCGGCAGCGGCAGCAACAACAGTGCAACTGGCGCCGCCACCCACACAAAGATGAACAGCAAGAACACAGACGTCGTGGAGATGGAGCGGAAGCGGAGAGAGTCCACAACGTCAGAGTCCTCTCTCGAGCATCTCGACCTCGGGCGAACGCCTAAGAAACTCAGCGGCTGCGCCGGTGCCGCACAGTCGACATCGACGCCGCACGAGGAGGCAGCGACGTCGCGCAAGCGCAAGCTGCGCCAGGTGCTGCAGCACCACCACCACCAGCAAAGCCAGGACCTGCTCAGCGACGAGGACGAGGACGAGGAAGAGGCACGTCCATTCAACCGCCACAAGCAGCGACGCGGCGCTGCCACTGCCCAGGGATCCTCCTCCGCCTCCATCGTGGTGGACTACTCCGCCGGCGATGCCAGCTCGTTGCGCAAGAAGTTCCGACTCAATCGCTCCGCGGCCAGTCTCTCGGAATCGGGATTCGTGGACGCCAGCAGCACCGTCCACAGCGGCTATTTGGGCAACAACAGCGCCAGCGCCAGCACCAGCGTCCCAGTGCCTTCTGTCTCCACATCCGCCTCGGCCGCCGGTGTAGCAGCCGCCTCCGCCTCCGCCTCCGCCTCGAGCAGCAGCAACAGCGGGAGCATTGGCGGCGGCTCCGGCGGCTCCTCGCCGCAGGGTCTGTGCCTCTCCAGCGGCGAATCGGGCATCGGTGCGGGCGACGAGCACATGAAGTACCTATGCCCCATTTGCGAGGTGGTATCCGCCACGCCGCACGAGTTCACCAACCACATCCGATGCCACAACTATGCCAACGGCGACACAGAGAACTTCACCTGCCGTATCTGCTCCAAGGTGCTTTCCTCGGCCTCATCCCTCGACAGGCACGTGCTGGTGCACACGGGCGAGCGGCCGTTCAACTGTCGCTACTGCCACCTGACCTTCACCACCAACGGCAATATGCACCGTCACATGCGCACTCACAAGCAGCACCAGACGGCGCAGTCCCAGTCCCAGTCCCAGTCCCAGTCACAGTCGCAGACCCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTGCCGGCACGAGCGGAGAGTTATGAAAGCGATGCCAGCTGCTCCACGGACGTGTCCAGCGGCAATAGTCACAGTCGCAGCAGCAGCTCCCTCCAGAACAACAACAACAACAACAACTCGCACAAGGCCACCAACAACAACAACAGGAGCAGCAGCAAGCTGGATCTGGAGGAGATGGAGGAACAGGAGCTGGAGCTGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAACAATGTGATCGATGCGGATAACCATGCGGAGGAGGATCTACACGACGGCGACGAGGAGGAGGCCGATGATGCCGATGACGTGGCCATGCTCACAAGCACTCCCGATGTGGCCACGCTGCTGGCAGGAGCCAGTGCCTCCGGTGCCGCCTCCCGCTCGCCCTCGCTCTCACCACCCGCCTCGCCCGGCCTGCTCCTGAGCTGCCCCGCCTGCGGCGCATCCGAGTTCGAGACCCTGCCTGCCCTGTGCGCCCACCTGGATGCCCGGCACTCGGACATACCGGCCAAGTGCCGGGACTGTGATGTGATTTTTGCCAGCCATCGCCAGCTGCAGGCACACTGCTGCCGCGGGGGACTGCCGCCGATGCTGGTCGCCAGCAGTTCGCCGCTGCACGCCGACGAGGATGCCGAAGACGAGGAGGAGGCGGATCGCGAGGATGACGAGGAGATGGAGCTGAAGCGGGACGACTTCTTCCACAAGCTCTATCTCAAGGGAACGTCGGCGGCGGGTGGTGGCAACGGCGGCGGTATTATCTCACATCCGCCGTCGCCCATCAAGCACGAGCCGGCGGACAGCAAGGACCTGGCCGACATACAGAGCATCCTGAACATGACCAGCTCCAGCTGCACCAGCAGTTTCCTGCGCAACTTCGAGCAGTCGGTAAACACGCCCAGCTCCAGCCAGTACAGCCTAGACGGGCGCGACCAGGAGGAGGAGGCGCAGGATGCCTTCACCTCGGAGTTCCGCCGGATGAAGCTGCGCGGCGAGTTCCCCTGCAAGCTCTGCTCCGCCATATTCCCGAATCTGCGCGCCCTCAAGGGCCACAACCGGGTGCACCTCGGATCGATTGGACCCGCTGGGCCCTTCCGCTGCAATATGTGCCCCTACGCCGTCTGCGACAAGGCGGCGCTGGTGCGGCACATGCGCACCCACAACGGCGACCGTCCGTACGAGTGCGCCGTCTGCAACTACGCCTTCACCACCAAGGCCAACTGCGAGCGCCACCTGAGGAACCGGCACAGCAAGACCAGTCGCGAGGAGGTGAAGCGCGCCATCGTTTACCATCCCGCCGAGGACGCTGGCTGCGATGACAGCAAGTCGCGGCTGGGCGAGGATCTGGCCGATATGAGCTTCCGCTCGATAAGCCCGACGCCGCCGCCACCACCACCGCCAGTCGGTGAGAGCAGCAGCTCCCAGCTGAAGCACATGCTCATGGGCGATCAGCAGCATCACTCCCAGTCCCATCCCCATCCCCATTCCCATCCCCTTCATCATCAGCATCAGCATCAGCATCATCATCACCCGGTGGCGCCAGCTCAGCAGCCTCTAAAGATCCAGGTGAAGAGCCTGGACCAGCTGGTGGACAAGAAGCCGGCGACGGTCCAGCAGTCGGAGAAGACTTCCGCCTTGGACTTTAGCATGGATGTGTTGGATCTCAGCAAGAAACCGACGGGTGGAGCGATGACACCCACCCCCACACCGCCGCCCGCGCTCACGCCTGTGGCTCCCATCTCGGCTGTTCCGGCCGCCGCCTTGGAGCAGCAGCAGTTGCTTCTGTCGCAGCAGCAGCTCTTCGGGGGCGCCGGCGACGCTGCCTCCCAGTACATGCAGCAGCTGTTCCGCAGCCTGCTGTTCCAGTCGCAGACGCCGGGCTTCTCCTTCTTTCCGTTCATGGCGCCACCGACGCCGCAGGCGAACCAAGAGAAGCCGTCCCTGGTGAGTCCGCCATCGCGGATGAACCCGCTGCCAGTGGGCGTGGGCGTGGGAGTGCCAGTGCCGTCCGGCGGACCCGTCAAAATGGTGATCAAGAACGGCGTACTAATGCCGAAGCAGAAGCAGCGCCGCTACCGCACCGAGCGCCCCTTTGCCTGCGAGCACTGCTCCGCGCGGTTCACGCTGCGCTCCAACATGGAGCGGCACGTGAAGCAGCAGCATCCACAGTTCTACGCCCAGCGACAGCGCAGCGGCCACCACGTGATGAGGGGCAGGGGCGCGTCGAATGCCGCCGCTGCTGCTGCCGCCGCCGCCGCTGCAGCCGTTGCCATGGGTCCGGCGGGGGGCTCGTCCCACCACCATGCTCACGCCCACAGCCATGGACATGGCCATGGACACGGGCATGCTCCCATCTCGGAGCAGGTGAAGTACGCCATTCTGGCTCAGCAGCTGAAGGCGCATAAGAACACCGATCTGCTGCAGCAGGCCTTGGCCCACGGCTCCAGCAGTGTGGCGGGCAATCCCCTCCTGCACTTTGGCTATCCGCTGGGACCGACGCCCGGCGCCGCGCACGTGAGCGGCCAGGGAAACGGTCAGACGCCCATGGTCATGGATGATGACGAACCCAAGTTGATCATCGATGAGGATGATAACGAGCACGACCATGACGCGGAGCCGGAGGACGTGGATGACTACGAGGATGAGGAAGAGGAGGAGGAGGACGAGCCCGAGGATGAGCCGGAGATGAGTCTGAACGAGCCCCACGTCGTTGTCGTCGAGAAGGAGGTGTCTTCGCAGGAGGAGCAGCATGAGGAGGAGGAGGAGGACGAGGAGGAGGAGGAGGAGAAGGAAGAGGAGCCCGAGGACGAGCTACCCAAGTCTTTGGAGCAGCTTAGCACCGTGTCCAGGTCCAGCCCCAGTCAAAACGAGGCTGCCCAAAAGATGGCAGAGACGATCCTGGAGCAGGCCATCAAGGCTGGCAAGCAGCCATCAGCGACAACTTCGCCGTCCGCCGCGTCGTCCTCCGCTCAGGAGGAGAACCTCCCGCCAGCCCCAACGCCCCCGGCTACCATGCAGGAGCCCAGCAGCAATCCAAGCAGTCTGAAGACGATGATAGCCCAGGCCGAGTCCGTCGGCAAGTCGCTGAAGGAGGTGGCCAGCTCGCCGTTCAAGGACGAGTCCCAGGACCTGGTGCCGGTGGCCAAGCTGGTGGACAACGCCACCAGCCAGAACATGAGCTTCAACAGCTACTTTCGACCCAGCGACGTGGCCAATCACATGGAGCAGAGCGACGAGGAGGGCCTGGTGGCCTCCGGCAGTGCCAGCGAGAGCAACAACAGCGGCACCGAGGACGTCACTAGCTCCAGTTCGAGCAGCGAGCCCAAGAAGAAGTCCGCCTACAGCCTGGCCCCGAACCGTGTCTCGTGCCCCTACTGCCAACGCATGTTCCCGTGGAGCAGCTCCCTGCGCCGCCACATCCTCACGCACACCGGCCAGAAGCCCTTCAAATGCTCCCACTGCCCGCTGCTCTTCACCACCAAGAGCAACTGCGACCGACATCTGCTGCGCAAGCACGGCAACGTCGAGTCCGCCATGTCGGTCTACGTACCCACCGAGGACGTCAGCGAGCCGATACCGGTGCCCAAGTCCGTGGAGGAGATCGAGATGGAGGAGCAGCGTCGCCGCCAGGAGGCGGAGCGCGAAAGGGAACGCGAGCTGGAGCGCGAGCGGGAGCTGGAGCGGGAGCTGGAGCGCGAGCGTGAGCTGGAGCGGGAGCGCGAGCTGGAGAAGGAGAAGGAGCGCGAGCGCCAGCAGCTAATCCACAAACTGGCCGCCCAGATGAGTGCCGCTGCGGCTGCTGCTGCTGCGGCCGCCGCTGTCTCGTGCGGCTCACCTGGAAATGGATCTTCAGCCGGATCCGGAGCCGCAGCCGGAGTCGGGGGCGATCTGTCGGCCGGAGGTGATCTGCCCTACAAGTGCCACCTGTGCGAGGGCTCCTTTGCCGAGCGTCTGCAGTGCCTGGAGCACATCAAGCAGACGCATGCCCACGAGTTCGCCTTGCTCCTGGCCAAGGGCGCCATCGAGAATGAGTCGCTGCATACGGCCGACTCGTCGAATCTCCAGCAGCTGCAGCAGCAGCACCAGCACTCGGACGATGAGGCCACCAATGGCCTGGGACGTGGCAAATATCCGGATTACAGCAACCGCAAGGTGATCTGTGCCTTCTGTGTGCGACGCTTCTGGTCCACCGAGGATCTCCGGCGCCACATGCGCACCCACTCCGGCGAACGGCCCTTCCAGTGCGACATCTGCCTGCGCAAGTTCACCCTGAAGCACAGCATGCTGCGCCACATGAAGAAGCACAGTGGACGGGCCCACAACGGGGACACGCCCGGCTCCGATTGCTCCGACGATGAGCAGGCGATGAGCAGTCCCACCGGGACCCCAGCTCCCTCTCCCATGCCGCTTCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGGCCTGAAGCTGCCCAAGCTGCACGAGCTGCTGGACAAGGCGAACGAGTGGCGGGCGAGTCGGCTGGGCGAGCACAAGGAGAACCTGGGCGAGGCGACGCCCTCGGGAGCGGCGGCAGCCGGCTCGGATCTGATCGGGAACCTTCTGGGGATTAGCGACCAGGGCATACTCAACAAGCTGCTGTCCTCCGCCGATGAGGCGGCCAAGCTCCTGGGAGTGGACAACAAGTGA
Protein Sequence
MLATQQQQQQQQQSGSGSNNSATGAATHTKMNSKNTDVVEMERKRRESTTSESSLEHLDLGRTPKKLSGCAGAAQSTSTPHEEAATSRKRKLRQVLQHHHHQQSQDLLSDEDEDEEEARPFNRHKQRRGAATAQGSSSASIVVDYSAGDASSLRKKFRLNRSAASLSESGFVDASSTVHSGYLGNNSASASTSVPVPSVSTSASAAGVAAASASASASSSSNSGSIGGGSGGSSPQGLCLSSGESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTAQSQSQSQSQSQSQTQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLPARAESYESDASCSTDVSSGNSHSRSSSSLQNNNNNNNSHKATNNNNRSSSKLDLEEMEEQELELNXXXXXXXXXXXXXXXNNNVIDADNHAEEDLHDGDEEEADDADDVAMLTSTPDVATLLAGASASGAASRSPSLSPPASPGLLLSCPACGASEFETLPALCAHLDARHSDIPAKCRDCDVIFASHRQLQAHCCRGGLPPMLVASSSPLHADEDAEDEEEADREDDEEMELKRDDFFHKLYLKGTSAAGGGNGGGIISHPPSPIKHEPADSKDLADIQSILNMTSSSCTSSFLRNFEQSVNTPSSSQYSLDGRDQEEEAQDAFTSEFRRMKLRGEFPCKLCSAIFPNLRALKGHNRVHLGSIGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHSKTSREEVKRAIVYHPAEDAGCDDSKSRLGEDLADMSFRSISPTPPPPPPPVGESSSSQLKHMLMGDQQHHSQSHPHPHSHPLHHQHQHQHHHHPVAPAQQPLKIQVKSLDQLVDKKPATVQQSEKTSALDFSMDVLDLSKKPTGGAMTPTPTPPPALTPVAPISAVPAAALEQQQLLLSQQQLFGGAGDAASQYMQQLFRSLLFQSQTPGFSFFPFMAPPTPQANQEKPSLVSPPSRMNPLPVGVGVGVPVPSGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASNAAAAAAAAAAAAVAMGPAGGSSHHHAHAHSHGHGHGHGHAPISEQVKYAILAQQLKAHKNTDLLQQALAHGSSSVAGNPLLHFGYPLGPTPGAAHVSGQGNGQTPMVMDDDEPKLIIDEDDNEHDHDAEPEDVDDYEDEEEEEEDEPEDEPEMSLNEPHVVVVEKEVSSQEEQHEEEEEDEEEEEEKEEEPEDELPKSLEQLSTVSRSSPSQNEAAQKMAETILEQAIKAGKQPSATTSPSAASSSAQEENLPPAPTPPATMQEPSSNPSSLKTMIAQAESVGKSLKEVASSPFKDESQDLVPVAKLVDNATSQNMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIEMEEQRRRQEAERERERELERERELERELERERELERERELEKEKERERQQLIHKLAAQMSAAAAAAAAAAAVSCGSPGNGSSAGSGAAAGVGGDLSAGGDLPYKCHLCEGSFAERLQCLEHIKQTHAHEFALLLAKGAIENESLHTADSSNLQQLQQQHQHSDDEATNGLGRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGRAHNGDTPGSDCSDDEQAMSSPTGTPAPSPMPLPSXXXXXXXXXXXXXXXXXXXXXXLGLKLPKLHELLDKANEWRASRLGEHKENLGEATPSGAAAAGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00491706;
90% Identity
-
80% Identity
-