Basic Information

Insect: Drosophila parthenogenetica
Gene Symbol: -
Assembly: GCA_035047505.1
Location: JAWNPM010000080.1:3138426-3142066[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.13 9.9 7.0 4.2 3 23 399 419 398 419 0.93

2 16 5.9 4.4e+02 1.8 3.0 2 17 430 445 429 456 0.75

3 16 0.33 24 5.8 1.6 3 19 489 505 487 509 0.87

4 16 0.0012 0.093 13.4 0.8 1 23 517 540 517 540 0.98

5 16 0.00059 0.044 14.4 0.3 2 23 545 566 544 566 0.97

6 16 6.4 4.8e+02 1.7 0.4 1 19 574 592 574 594 0.85

7 16 0.0022 0.16 12.6 2.3 1 22 614 635 614 638 0.90

8 16 0.07 5.2 7.9 0.7 3 21 645 663 645 664 0.90

9 16 0.014 1.1 10.0 0.6 1 23 683 708 683 708 0.96

10 16 0.038 2.9 8.7 1.6 2 23 723 745 722 745 0.93

11 16 0.024 1.8 9.4 0.8 2 23 751 773 750 773 0.93

12 16 0.024 1.8 9.4 0.2 2 23 777 799 776 799 0.96

13 16 0.00014 0.011 16.3 0.9 1 23 805 827 805 827 0.98

14 16 0.0068 0.51 11.1 0.5 1 23 831 854 831 854 0.93

15 16 0.0001 0.0078 16.8 0.9 1 23 860 883 860 883 0.97

16 16 0.0015 0.11 13.1 0.5 5 23 896 915 888 915 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.13	9.9	7.0	4.2	3	23	399	419	398	419	0.93
2	16	5.9	4.4e+02	1.8	3.0	2	17	430	445	429	456	0.75
3	16	0.33	24	5.8	1.6	3	19	489	505	487	509	0.87
4	16	0.0012	0.093	13.4	0.8	1	23	517	540	517	540	0.98
5	16	0.00059	0.044	14.4	0.3	2	23	545	566	544	566	0.97
6	16	6.4	4.8e+02	1.7	0.4	1	19	574	592	574	594	0.85
7	16	0.0022	0.16	12.6	2.3	1	22	614	635	614	638	0.90
8	16	0.07	5.2	7.9	0.7	3	21	645	663	645	664	0.90
9	16	0.014	1.1	10.0	0.6	1	23	683	708	683	708	0.96
10	16	0.038	2.9	8.7	1.6	2	23	723	745	722	745	0.93
11	16	0.024	1.8	9.4	0.8	2	23	751	773	750	773	0.93
12	16	0.024	1.8	9.4	0.2	2	23	777	799	776	799	0.96
13	16	0.00014	0.011	16.3	0.9	1	23	805	827	805	827	0.98
14	16	0.0068	0.51	11.1	0.5	1	23	831	854	831	854	0.93
15	16	0.0001	0.0078	16.8	0.9	1	23	860	883	860	883	0.97
16	16	0.0015	0.11	13.1	0.5	5	23	896	915	888	915	0.92

Sequence Information

Coding Sequence: atgtcggaaaatgcaaaaactaaaaacgaTAGTGAGCGTAGCTGCCTGCATTGCAGAGTGCACAATTCAAAGCAGCAGTTTCAAGAGATATTCGATGAAGTGGGAATTGACATCGAATTACCCGATTTGCTGGCCAAATATTTTCACATCAATGCCAAACCCGATCCACAAAAACAGCAATTACTGTGTCAAGAGTGTGTGAAAACCTTAATTCGTTTCTTTGACATTGACGAACTGCAGCGGGAACAGGATGCGGCAAATGCGGCCAAAAAACAGGCCAAACAGCCCGAGGCAACACCTACAGCGACAAACGAAGCCGTCAAGAAGGAAACAAAGGGCgtcaaacaacaaatatcaccagcaaacaaaaccaaaactgaacCTAAAAAGTTGCCCGTAGCTGTAAAGTTAGCCGCCAAACCCAAGCCAACCAAAGTGACAGTCACAGAGGAGCCAGTTTCCATACGAGTTACACGAGCCAAGTCCATAACTGTGACACCAAAGGTCAAGGCcaaaccaattgaaaattaCAGCGGCAAAGCGGTGGGCAGAAAGAGTAGGTCTAAGGAAGCCGGCACTGGTGAGCAGGAGCAGATTAGCGAACTGCTGCGTGACATACTGGACGATGAGAAGGCGGCCAGCGATGACAAGTTcgcagaagcagcagccacagtGCGTCAGCTGGAGACACAAGCGGCGGTGCAGGAAGAAGAGCAGCAggagcggcagcaacaacagcagcaggaaaatGGTGATGAGCTAGAGTTTCTGCTGGAACAAGAAGATGCCTCCTCGGACATGGACGTGCAGCACTTTAAGGTGGAGAACTACGCATTAGTGGACTCTTCTCAATCACAGACCGAGGATGAATCCGTCAAGGTGGAGCCATTTAACTTTGTGCTTATCAAGGAATCCGATGATATAGACGATCTCTATGAATACCTATCCACGGTGGTCAGAACTTGCTTTGAGACGCTGACTTTTGAGTGGTCCACCGTCTGTTGCCACTGCTCGCTGAAGTGTCAGCAGTTTGAGAGCCTGCTGGGACACATGCACAAGTGTCATCAGTTGCCCGAGGAGCGTTTCAAGTGTCCCATTGCGAACTGCAATGCTGAGCTGCAGGGTAGCAAATTTCTGGCCATGCATTTGGTGGTACTGCATGCGCCAGTGGCAGACATACCCATCTACGGCTGCTGTCCCGAGTGCAACATGACCTTCTCCAACATTTTGCAGTACAATAAACACTCCTGTGCCCATGTGATCAAGAAGCGTCGTGGCATACGCTTGTACTGCGAAATGTGCGGCTTGGAGTTTCCCTCCTGGAAGCGCTTTAATTTCCACAATCAGTTTCATTTGGAGCGACACAGACCACGCGCTTGCTTTGTATGCAACTATGCGGACAATAACATTGATGATCTCTTCCAGCATTTGCACTACTCACACGAGCCCGAGGGCACGCTCTTCTGTGACATCTGTGACCGCAACTTCCGGGACGCGACTGTCTTTGCGGAGCACAACAAATGCCACTCGAATGTCACCAGCACCACCTACACCTGCACCACCTGCAGCGCCAACTTTGACACACGTGGACGTCTCAACGGACACATTCGTACACGACATGGATCCATTATAAGCTGTGAGCTGTGTAGTCGTGAATTTGCCACCGAAGCCACATACAACATCCACATGAAGAAGCATCTGATCATTGAGCGCGAAATTCATTACTGCAGCAATTGCGGGCAGCTGAGCGAGAACCACGACAAGATGCTAgcTCATGTGGAGGATGCCTCATCGGACTGTTTCAATGTGGAGCTCTACGTGGAATTGATACGGGATGCCTATGTGTGTGAATATTGTTCATGTTACTTTAGACAGAAAACCGATTTGCGCGATCATCGGGATTCCGGAGTGCATAAGGATAATCTGTTTTGGTGTCAGCCGTGTGGCAAGGCATTTAACGACATGAAACTATATCGACATCATTTACGCAACTATCAACAACAACGCGCAGATGTGGAGCATCGCAAACTGGAGGTCTGTCTGTACTTTATGTGCGACTACGAGGATTGCTTTGAGGCTTATATCAATTGGAACTCTTTGTACACACATAAGCGACGCACGCATGATGGCATTGAGAAGCAGGAAGGCGCAAAGCCCAACGAATGGATCTGCCAGTTCTGTCAAAAGGAATGCCGGTCCAAAATGTCGCTATCGGTGCATGTGGCACGCAGTCACAACAACAATAATGTAACCTGTTCGATCTGCAAGTCTTCATATAAAGACGATGAAGCCCTAAAGAAGCATCACGCCTATTGGCATGAGCCCATGGAGTGTGCGCTGTGCCTGAAGGTGGTGAAGAGTCGTCGTAACTTTGACACACACATGAATGTGGTGCACTCGAACAATAAGCGTTACACCTGCAGTGTCTGCGAGAAGGGTTTCTTCTACAAGAGCGAAATGGAGGCACACAAGCGACTACATACACAACTGTTTGAGTGCGATCAATGCAGCTTCACCACGCGCAACAAGAAGTCGCTGGCAGTGCATGTGCTTGGACAGCATTACAAGCGTTTTGCTTTTGAGTGCAAGACGTGCAACAAGCGCTTTGGTCGTCGTCAGGGCTTAATCAGTCACGTGCAACGCATACATGGCTCAAATAATACGTGCCGTGATTACTTTGAGAATGGTTGCAGCAAATCGTTTAGCACAACGGCTAAACTGAATGTGCATGTGCGCAAAGCACACAATGGCAGCATCTTTCTTACGGATTTGGACGACGAAGAGCAGCAGGAAGAAGAGCAGGAGCTTAGACAagaggagcaggaggaggaaCAAGCTGAAGAGGAACAACAGGAGGAGGAGCAGCCAGAAGATGAACAGCCAGAGGAGGAACAACCATTGGAGGAGCCCAAATCACAGAAATCTAAAGCAAAGCGTCAGGCTACCCcagaagcaacaacatcaaagaAGCGCTGCGTGCGTCTTGGCAATGAAACTCAAGTCGAGTTGATTCCAGGCGATcaagaggaggaagaggaacaCTGTGAAGACGCcaagaaaaccaaaagcaaagcaccactattaaaaagaaagaggaaagttaattaa
Protein Sequence: MSENAKTKNDSERSCLHCRVHNSKQQFQEIFDEVGIDIELPDLLAKYFHINAKPDPQKQQLLCQECVKTLIRFFDIDELQREQDAANAAKKQAKQPEATPTATNEAVKKETKGVKQQISPANKTKTEPKKLPVAVKLAAKPKPTKVTVTEEPVSIRVTRAKSITVTPKVKAKPIENYSGKAVGRKSRSKEAGTGEQEQISELLRDILDDEKAASDDKFAEAAATVRQLETQAAVQEEEQQERQQQQQQENGDELEFLLEQEDASSDMDVQHFKVENYALVDSSQSQTEDESVKVEPFNFVLIKESDDIDDLYEYLSTVVRTCFETLTFEWSTVCCHCSLKCQQFESLLGHMHKCHQLPEERFKCPIANCNAELQGSKFLAMHLVVLHAPVADIPIYGCCPECNMTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCNYADNNIDDLFQHLHYSHEPEGTLFCDICDRNFRDATVFAEHNKCHSNVTSTTYTCTTCSANFDTRGRLNGHIRTRHGSIISCELCSREFATEATYNIHMKKHLIIEREIHYCSNCGQLSENHDKMLAHVEDASSDCFNVELYVELIRDAYVCEYCSCYFRQKTDLRDHRDSGVHKDNLFWCQPCGKAFNDMKLYRHHLRNYQQQRADVEHRKLEVCLYFMCDYEDCFEAYINWNSLYTHKRRTHDGIEKQEGAKPNEWICQFCQKECRSKMSLSVHVARSHNNNNVTCSICKSSYKDDEALKKHHAYWHEPMECALCLKVVKSRRNFDTHMNVVHSNNKRYTCSVCEKGFFYKSEMEAHKRLHTQLFECDQCSFTTRNKKSLAVHVLGQHYKRFAFECKTCNKRFGRRQGLISHVQRIHGSNNTCRDYFENGCSKSFSTTAKLNVHVRKAHNGSIFLTDLDDEEQQEEEQELRQEEQEEEQAEEEQQEEEQPEDEQPEEEQPLEEPKSQKSKAKRQATPEATTSKKRCVRLGNETQVELIPGDQEEEEEHCEDAKKTKSKAPLLKRKRKVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00471137;
90% Identity: iTF_00471137;
80% Identity: -