Dpar006237.1
Basic Information
- Insect
- Drosophila parthenogenetica
- Gene Symbol
- RREB1_1
- Assembly
- GCA_035047505.1
- Location
- JAWNPM010000118.1:293355-299346[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.014 1 10.1 0.9 1 21 249 269 249 271 0.93 2 13 0.00034 0.025 15.2 0.2 1 23 281 303 281 303 0.98 3 13 8.2e-05 0.0061 17.1 7.3 1 23 309 331 309 331 0.98 4 13 0.25 19 6.1 1.6 2 19 542 559 542 562 0.94 5 13 0.51 38 5.2 0.1 1 23 719 741 719 741 0.97 6 13 1.3e-05 0.00094 19.7 0.7 1 23 751 773 751 773 0.99 7 13 0.00084 0.063 13.9 2.0 1 23 779 802 779 802 0.97 8 13 0.003 0.23 12.2 2.0 1 23 1088 1111 1088 1111 0.95 9 13 8.8e-05 0.0066 17.0 0.3 2 23 1448 1469 1447 1469 0.97 10 13 0.15 11 6.9 6.3 1 23 1475 1498 1475 1498 0.97 11 13 4.5 3.4e+02 2.2 3.6 1 23 1638 1661 1638 1661 0.79 12 13 0.0086 0.64 10.7 0.5 3 23 1722 1742 1720 1742 0.96 13 13 0.0014 0.1 13.3 4.8 1 23 1748 1770 1748 1770 0.99
Sequence Information
- Coding Sequence
- atgCTGgccacacaacaacaacacacagcagcaacagcggcagcagcaaccacaacaggCAGCGACAGCGCTGCCAGCGTCGTCGAGATGGAACGCCAGCGTCGCGACTCAAGCACGTCCGAATCGTCGCTGGAACATCTCGACCTGGGACGCACACCAAAGaagctcagcagcagcaacggtgCACCGCAGCCGACGTCAACGCCGCACGAACtaacagcaacgacagcaacgtCGCGTAAGCGTAAACtgcgccagcagcagcaacagcagcagacgcAGCACTTGCTCTCtgacgaagaagaagagcaaaagcaacaacaacagtcagaACAGACCGTGCAGCGACCGCGTCACAAGCAGCGACGCAATGCCGCTGCCAGCGCTAGCATCGTTGTCGACTACAGCGCCAGCGGCGACGCCAGTTCGCTGCGAAAAAAGTTTCGTCTGAATCGTAGCAGCGCAGTCGGCAGCGAACTCTCCGAATCGGGTTTCGTTGATGGCAGCGCACATAGCGGTTATTTGctcagcagcagtggcagcggcagcggcagcagcagtggcggCAGCAGCGCACAGTCAGCGGccatcgctgctgctgttgtggcagcgcagcaagcagcagcagcagccgcatcggcatcggcatcaGCGTCAAGCAGTTCGGGTGGCTCATCGCCAAACGGTAATTTGTGTTTATCGAGCGCCGAATCGGGTATTGGCGCCGGTGAggatcaaatgaaatttttgtgcCCCATTTGTGACGTCGTCTCGGCCACGCCCCATGAGTTCACCAATCACATACGTTGTCACAACTACGCCAACGGCGACACGGAGAATTTCACCTGTCGCATCTGCTCAAAGGTGCTGTCCTCGGCCTCATCGCTGGACCGACATGTGTTGGTGCACACGGGCGAGCGGCCATTTAATTGCCGTTATTGCCATTTGACATTCACAACGAACGGCAACATGCATCGTCATATGCGTACACACAAACAGCATCAGAcaacgcagcagcaacaacagcaatcacagcagcagcagcaacagcagcagcagcatacacaacaacaacagtcacagtcccagcagcaacagtcgcagtcacagcaacagcagtcaCGACGGCAGCAACAGTCGGCAACAGCAATTGCTGTGCGTTCCGAGAGCTACGAAAGTGACGCAAGTTGCTCAACGGATGTGTCCAGTGCCCAAAGTCACAGCAGccaacacagcagcagcagcaatcactctaacaacaacaacaacaacaatagtaaactgagcaacaacaacaacaatactgaGGAGCAGCTGGCAACTCTAGGCAGCAACTCTAAGCGACGACACAAAaccaacatcaacaacaacaacatcatggAAAAAGAGGAattggaggaggaggagcaagAGCTGGACAACATGAGCGATGATGTCGCACAAATGATCACCTCCACGCCCGATGTGGCAACCCTGCTTGCCTCGAATGCCACCACACCGAGTCCCTCCCCAGCACCAGCAGCCATGATGCTGCTCAGCTGCCCCGCCTGCAATGCCGATGATTTCGAGACATTGCCAGCACTGTGGCAACACTTGGATGAGCAACACGCGGATATACCCGCCAAGTGTCGCGAGTGCGAGGTAATTTTTGCTACACACCGACAATTGCAGGCGCACAGCTGCAATGGCATGCAAATGTTGCCGCTGCTGGGTGTCAGCTCAAGTCCCAAGCGCGAGGAGCTGGGTGAGGAAGAGGAGCGTGAGGAGCAAGAGCGCGAGGAGGATGAAGAGGAGCaggatgaggaggaggaggagcgtGAGCAAACGAAACGCGATGATTTCTTTCAGCAACTGTACCTCAAGGGCAAGAACAGCGCTGCCACAGCTGCCAATCAATCCCTGCcaatgctgctgttgtcccCCATCAAGCGTGAGCCATCGGAACGCGCAGATAATCGCCAGGATCTGGCTGATATACAGAGCATACTCAACATGACCAGCTCGAGCTGCACCTCCAGTTTTCTGCGCAACTTTGAGCAGTCGGTGAACACACCCTGCTCCTCCAGTCAGTACAGTTTGGACGGTCGCGATGCCGACGAGGAGGCGCAGGATGTTTTCACCAGCGAATTCCGTCGCATGAAGCTGCGCGGTGAGTTTCCCTGCAAACTGTGCATTGCGGTGTTTCCCAACTTGCGCGCACTCAAAGGCCACAATCGTGTGCACTTGGCGGCTGTGGGACCCGCAGGTCCTTTCCGCTGCAACATGTGTCCTTATGCGGTGTGCGACAAGGCGGCGCTGGTGCGTCACATGCGCACGCATAACGGTGATCGGCCGTACGAGTGTGCCGTCTGCAATTATGCATTCACCACAAAGGCGAATTGTGAGCGGCATTTGAGAAATCGACATGGCAAGACCAGTCGCGAGGAGGTTAAACGTGCCATTGTCTATCATCCTGCGGAGGATGCCAGCTGTGAGGACTCTAAGGCGCTTGGTGCCCAACGTATGCCGGATGCGGACTTAGCGGACTTGAGTTACCGCTCGGTTTCGCCGCCGCCCGTGGAGCCAGTGTCGCAGCTGAAGCACATGTTGCTCGCGGAGGcaacgacagcggcagcaacatcagccGCAGCTAGCAGCACAGCAAGTACGGCTGCTGTCAAGACGGCTCCCTCGAAAATACAAGTCAAGAGCTTGGATCAGTTGGTCGATAAACCTTTGGCGCCTGTTCTGGATCTGAGCATGGATGTGTTGGATTTGAGCAAGaagccaacagcaacacatgagctgcagctgcaacagcagcaggaacaacaacagcaattgcagcagcagcgcgcACACGAGCGTGAACTCGAACGTGAGCATGAATTGCTGTtgtcacagcaacagcaggtgcagcagcagcagcagcaacaggcacaacagcagcagcaactgtttgGCGCTGGCGATGCTGCCACGCAGTACATGCAGCAACTGTTTCGCAATCTCATGTTCCAGCAATCGCCGGCATTTCCGTTCTTTGGCTTTATGCCgcccacagcagcagcagcggatAAGTCGACGCCAACAGCATTGCccgcaacggcagcaacatcgAGCGTTACGCCAGCAATTGCTGCCGCTAACTTGGCAATGCCACTGCCCACAGGCGTGGGAGTGGGCGTGCCTGTGCCCGCCGGTGGTCCCGTTAAAATGGTCATCAAAAATGGCGTCTTAATGCCGAAACAAAAGCAGCGTCGCTATCGCACCGAACGACCCTTTGCCTGCGAGCATTGCTCGGCGCGTTTCACGCTGCGCTCGAACATGGAGCGCCATGTGAAGCAGCAACATCCGCAATTCTATGCACAGCGACAACGCAGCGGTCACCATGTGATGCGCGGTCGTGCAGCGGCTTCCTCCACGGCAGCAGCAAAcgccgccgcagcagcagctgcagcagccgcCGCTGCAGCCGCGGCAGCAATGTCCAACTTaagccagcagcaacatggTCATCATGGACATCATGCGCACATTTCGGAACAAGTGAAGTATGCGATTCTGGCACAGCAGCTGAAGGCACGCAAGGATACGGATTTGCTGCAACAGGCGCTGGCAAACGGATCGAGCAGCGTGGCAGGCAATCCGCTGCTGCATTTTGGCTACAAGCAGCAGTCAAGTGGGCTGAGCAACGGACAGGGTGTGATCagcaatgatgatgatgagcccAAGTTGATTATTGATGAGGAtgatgaggaggaggaagaggagcaggagctggacgaggaggaggaagatgAGGAGCTCGAAGATCTTGAGGAAGAGCaggaaagggagagagaagtAGTGGCTCCCACACGCAGCTCCACGCCCATTGAAGCCGCCAAGAAAGTGGCCGAAACCATACTCGAGCAGGCCATCAAGGCGGGCAAACCCCAAGAGAACGACAACTTGCCTAAAAAGTCAGCAACACCTACGcccacagccacgcccacagtgACAGTGACAcccacagccacgcccacgcccaccaGCATGAAATCGCTGATCGCACAAGCCGAGTCCGTAGCCAAATCCCTCAAGGAAGTGGCCAGTTCGCCCTTCAAAGATGAATCTCAGGATCTGGTGCCCGTGTCCAAACTGGTGGACAATGCCACCAGCAATCAGGTGTCATTCAACAGCTACTTTCGTCCCAGCGACACAGCCAATCACATGGAGCAATCGGATGAGGAGGGTTTGGTGGCCTCCGGCAGTGCCAGCGAGAGCAACAACTCAGGCACCGAGGActtcaccagcagcagcagcagcagcaatgaaCCCAAGAAGAAATCCGCCTACAGTTTGGCACCCAATCGTGTCAGTTGTCCCTATTGCCAGCGCATGTTTCCCTGGAGCAGTAGCCTAAGGCGTCACATCCTTACGCACACAGGACAAAAGCCCTTCAAGTGCTCCCATTGTCCGCTGTTGTTCACCACCAAAAGCAACTGCGATCGTCACTTGTTGAGGAAGCATGGGAATGTGGAGAGCGCCATGTCGGTGTATGTGCCCACGGAGGATGTGAGTGAGCCGATACCAGTGCCCAAGTCGGTGGAGGAGATAGAGCTCGAGGAGCAGCGACGACGCAAGGCAGAGCAGCTGGAAAGGgagcgggagagagagcgCGAGCGGGAGCGGGAGCGCGAGAGAGAACGGGAACGTGAACGCGAACGCGAACGGGAGCGTGAAAGGGAACGCGAaaaggagcaacagcagcagcaacaacagcagcagcaactcatGCAACagctggctgctgctgcacaaatggctgctgctgccgcctgCAGCACAACGCCCATTACAGCCGGCAGCACAGCTAGCCACGCCCCCTCGCCCATTGCGGCACTCGGCAGTCCACCCACCAGCGAACTGCAGGCCAATGAGCTGCCCTACAAGTGTCATCTCTGCGAATACTCCTTCGGCGAGCGACTGCAGTGCTTGGAGCACATCAAGCAGCAACATGCGCAGGAATTTGCTCTGCTGCTAGCCAAAGGTGCCATCGAAACggaggagcagcagctcacagcagcaactgcagcaacaccagcagcagccaccACCACCAATGCCATTTCCGATGATGAAACCGGTTTGACCTCACGTACCGTCAAATATCCCGATTACAGCAACCGCAAAGTGATTTGTGCGTTTTGTGTGCGCCGCTTTTGGTCCACGGAGGATTTGCGTCGTCACATGCGCACACATTCCGGTGAGCGACCATTTCAGTGCGAGATTTGCTTGAGGAAATTCACACTGAAGCACAGCATGTTGCGTCACATGAAGAAACACAGCGGACGCAGTCACAATGCTTTGGATTTGGCCGGGCAATCGGATTGCTCCGATGATGAGCAGTCTGCCACGCCACCCAGCACACCCACACCTACGCCCATGGTCATGCCACCAgcccacaacaataacaacaacaacaacaacaacaacaacaataccagcaataacaacaacaacaacagttgtcacaacaacaacagcaaacagaatTTACGTTTGCCGAAGCTGCACGAGCTGTTGGACAAGGCAAACGAATGGCGCAGCAGTCGTTTGGGTGAGCACAAGGAGAATATTGCTGAGAGCGccacaccaacagcagcaacagctgctgctgccgccgctgcagcagcagcagcagttgctagCGGGGATTTGATTGGCAATTTGTTGGGCATCAGTGATCAGGGCATACTCAATAAGTTGCTATCGTCGGCAGATGAGGCAGCTAAGCTATTGGGGGTGGAGAAGTAA
- Protein Sequence
- MLATQQQHTAATAAAATTTGSDSAASVVEMERQRRDSSTSESSLEHLDLGRTPKKLSSSNGAPQPTSTPHELTATTATSRKRKLRQQQQQQQTQHLLSDEEEEQKQQQQSEQTVQRPRHKQRRNAAASASIVVDYSASGDASSLRKKFRLNRSSAVGSELSESGFVDGSAHSGYLLSSSGSGSGSSSGGSSAQSAAIAAAVVAAQQAAAAAASASASASSSSGGSSPNGNLCLSSAESGIGAGEDQMKFLCPICDVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTTQQQQQQSQQQQQQQQQHTQQQQSQSQQQQSQSQQQQSRRQQQSATAIAVRSESYESDASCSTDVSSAQSHSSQHSSSSNHSNNNNNNNSKLSNNNNNTEEQLATLGSNSKRRHKTNINNNNIMEKEELEEEEQELDNMSDDVAQMITSTPDVATLLASNATTPSPSPAPAAMMLLSCPACNADDFETLPALWQHLDEQHADIPAKCRECEVIFATHRQLQAHSCNGMQMLPLLGVSSSPKREELGEEEEREEQEREEDEEEQDEEEEEREQTKRDDFFQQLYLKGKNSAATAANQSLPMLLLSPIKREPSERADNRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSSQYSLDGRDADEEAQDVFTSEFRRMKLRGEFPCKLCIAVFPNLRALKGHNRVHLAAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDASCEDSKALGAQRMPDADLADLSYRSVSPPPVEPVSQLKHMLLAEATTAAATSAAASSTASTAAVKTAPSKIQVKSLDQLVDKPLAPVLDLSMDVLDLSKKPTATHELQLQQQQEQQQQLQQQRAHERELEREHELLLSQQQQVQQQQQQQAQQQQQLFGAGDAATQYMQQLFRNLMFQQSPAFPFFGFMPPTAAAADKSTPTALPATAATSSVTPAIAAANLAMPLPTGVGVGVPVPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRAAASSTAAANAAAAAAAAAAAAAAAAMSNLSQQQHGHHGHHAHISEQVKYAILAQQLKARKDTDLLQQALANGSSSVAGNPLLHFGYKQQSSGLSNGQGVISNDDDEPKLIIDEDDEEEEEEQELDEEEEDEELEDLEEEQEREREVVAPTRSSTPIEAAKKVAETILEQAIKAGKPQENDNLPKKSATPTPTATPTVTVTPTATPTPTSMKSLIAQAESVAKSLKEVASSPFKDESQDLVPVSKLVDNATSNQVSFNSYFRPSDTANHMEQSDEEGLVASGSASESNNSGTEDFTSSSSSSNEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRKAEQLEREREREREREREREREREREREREREREREREKEQQQQQQQQQQLMQQLAAAAQMAAAAACSTTPITAGSTASHAPSPIAALGSPPTSELQANELPYKCHLCEYSFGERLQCLEHIKQQHAQEFALLLAKGAIETEEQQLTAATAATPAAATTTNAISDDETGLTSRTVKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNALDLAGQSDCSDDEQSATPPSTPTPTPMVMPPAHNNNNNNNNNNNNTSNNNNNNSCHNNNSKQNLRLPKLHELLDKANEWRSSRLGEHKENIAESATPTAATAAAAAAAAAAAVASGDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00471076;
- 80% Identity
- -