Basic Information

Insect: Drosophila parthenogenetica
Gene Symbol: -
Assembly: GCA_035047505.1
Location: JAWNPM010000242.1:6496495-6499651[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.3e-05 0.0047 17.5 5.8 1 23 169 192 169 192 0.97

2 16 0.0034 0.25 12.0 2.5 1 23 239 262 239 262 0.97

3 16 0.00064 0.048 14.3 3.3 1 23 322 345 322 345 0.96

4 16 0.003 0.22 12.2 0.4 2 23 397 418 396 418 0.97

5 16 2.9 2.2e+02 2.8 0.7 1 20 531 550 531 552 0.75

6 16 0.02 1.5 9.6 0.6 1 23 561 583 561 583 0.94

7 16 0.00029 0.021 15.4 2.1 1 23 590 612 590 613 0.95

8 16 0.0014 0.11 13.2 1.9 2 23 621 642 620 642 0.96

9 16 0.019 1.4 9.7 0.1 3 19 670 686 669 692 0.93

10 16 0.0021 0.16 12.7 1.3 1 23 729 752 729 752 0.96

11 16 1.9 1.4e+02 3.3 3.0 1 22 759 780 759 780 0.95

12 16 0.0064 0.48 11.2 0.8 1 23 789 812 789 812 0.97

13 16 1.6e-05 0.0012 19.3 0.5 1 23 831 854 831 854 0.97

14 16 0.098 7.3 7.4 0.2 1 23 864 886 864 886 0.94

15 16 1.1e-05 0.00084 19.8 1.7 1 23 892 914 892 914 0.99

16 16 5.2e-05 0.0039 17.7 0.9 1 23 920 942 920 942 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.3e-05	0.0047	17.5	5.8	1	23	169	192	169	192	0.97
2	16	0.0034	0.25	12.0	2.5	1	23	239	262	239	262	0.97
3	16	0.00064	0.048	14.3	3.3	1	23	322	345	322	345	0.96
4	16	0.003	0.22	12.2	0.4	2	23	397	418	396	418	0.97
5	16	2.9	2.2e+02	2.8	0.7	1	20	531	550	531	552	0.75
6	16	0.02	1.5	9.6	0.6	1	23	561	583	561	583	0.94
7	16	0.00029	0.021	15.4	2.1	1	23	590	612	590	613	0.95
8	16	0.0014	0.11	13.2	1.9	2	23	621	642	620	642	0.96
9	16	0.019	1.4	9.7	0.1	3	19	670	686	669	692	0.93
10	16	0.0021	0.16	12.7	1.3	1	23	729	752	729	752	0.96
11	16	1.9	1.4e+02	3.3	3.0	1	22	759	780	759	780	0.95
12	16	0.0064	0.48	11.2	0.8	1	23	789	812	789	812	0.97
13	16	1.6e-05	0.0012	19.3	0.5	1	23	831	854	831	854	0.97
14	16	0.098	7.3	7.4	0.2	1	23	864	886	864	886	0.94
15	16	1.1e-05	0.00084	19.8	1.7	1	23	892	914	892	914	0.99
16	16	5.2e-05	0.0039	17.7	0.9	1	23	920	942	920	942	0.98

Sequence Information

Coding Sequence: ATGACAAGGACATGCAGAGTCTGTGGAGGAGCAGATGGACGTTTCTGGATTGAGACACCAGTTAACAAATACGCAGAGAAAACCTTCAATCAACTGCTGGTCGAGTTAACCAGACTTGAGGTCGCTATAGATCAAGCGGACAAGCTGCCGCCCTGGCTATGCCGCAGCTGTGAACAGAAGCTGGAAAATGCTTACGACTTTGTGCTGCAAGCGCGTGAAACTCACGAGCTGTGGATGCAGAAACTGGCGACGGAGACAGCGCTGGAAGACGCCGAGAAAGGTACCTTGGAATGCCTGCGAGAAACACCAATACAACTGCTAGAGATCGAGGGTGTAACTATCAAAATGGAGCCCTCGACGGAACCAGCGCTGCCCCAAGCAGATCCAGCGATTTCAGTTGATCCGCTGATCAAGAAGAACTTGGATGAGACCAgtgacgatgatgacgacgatgatgtgCCGCTAAAGCAACGCAAGGCACAAAACGACAGGCAGTCCATGCAGCACAAGTGCAACAAATGCGACAAATCCTTCAGATACGTGACAAATCTTTTCAGGCACAAGCAGCGCGACCACAGTCCTCCCAAGTTCAAGTCTAAGACGGAAAAGTGCAGTGCCGAAGGCACAGAATCGTTGTCACACAACCTGCTCAAGAGCTCCATGGCAGCCCAAAGCAGCGCCAACTCCGACTTGGACAGCGAAACTGATAACTACTATAAATGCGACCAGTGTGACAAGTCCTACAAGTACATCATGGTGCTCatcaaacacaagcacacggCGCATGGGGTTAACCAGCTACCAGCGGAGCCCAGGCCAATCCGACGCACTGAATCCGGCTTGGAGCAAGCAACCAAGGTCAAAACAAAGCCACCCAGCACGGATTCCTTGGTGCACAGCATCATCAAAGAAGTCAAAATCCCGGAGGAGGATGAGCTGGACAGCACCGGAGGGGACAACTATTATAAATGCGATCAGTGTGACAAGTCCTACAAGTATATAGTGAGTCTAATCAAGCACAAGCACAAGGAGCACAACGCGTACAAGGATTCCAACGATGAGGAGGAGCACGAGAAGGCAACTGCCTCCACCTACGCTACGGGAGCAGGCTCCAAGCCGCCCCGCATCGACCGCCGGGTAAAGGACTTCGATGAGCATCGCTGTAAGCCAAATGGTTCCAAGGAGATTCAGTGCATGATCTGCCTGCGAAGATTCGTTAAGCTGCGAGAGCTGCGCGAACATCTCCGAGCACATCCCCGGGACTTTAAGTTCGATGGCCACGGGGAGCCCATCGAGCGCATAGCCGAGGGATTCTACAGAACTGCCGTGGAGTCCACGGAGATGGGCTTAAAGATACGCATCCTAAACGACCTGAAGCTGGGCATGTTCGGTCGCTACTATTCCATCACCAACGAGGCGCGCTACGAGATGAATCTGGACAGCTCCGATACGGACAGCGATGGCGAGGCGGGAGTTGTACAGCGACGCAGTTATTCCTGCGAACTGTGTGATTCACCCACTGCCGTTTGGCCACGCAAGTTTCAGCTGCACCAGCATCATCGCCAGCACCACACCTGGCTAGAGGCACCCTATGTCTGTCAGCGCTGTGACTCCCGCTTCCTGAGCGCTCAACTGCTCGACCATCACACTCAGAAGCTCTGCCAGAATACGCTGAAGCGCTTCATGTGCGACAAGTGTCCGCAGCGTTTCTTTTGGCGGCGGAACCTTCGTGCCCATCTCGTGGAGCATAAGAACAAGCAAGAGACCTACCCGTGTGACCAGTGCTCACGCAGTTTCCAGGACAAGAGCGCCGTAACGAAGCACAAACTGATGCACCACGATGTAGGCAACGAGCTGATTCCCTGTCGCTGGTGCACACGCACATTCTATCGCTTGGCGCTGCTCCATAAACACGTAAAGCGTCATGGCTTCAGTGGCGAAGATCTGCCCTTGGCGGAGACATTGCTTGCCGATGCGGCCAAGACTTCCGGACCCAAGACGATACTCTGCAAGGTCTGTGACATGCAGTTCGTGACCATTGCCGATCTGCGCCGGCATAATTCTCTGCAGGCACATAGCGGGGAGAGCAGCAACTACATGATAAGCACGGAGAACGGCTTCGAGCTGCAGCTGGACGAGACAGACGGCAGCGATGAGGAGTCCACTGGCGCCACTGGCAGATCCTACAGGTGTGACCTGTGCGACATGACCTTTCAGCGGCGACGTGACATGAGCGAACACCAGTACTCCTTGCACACCTTCGACAAGCTGCCCCATTCCTGCGATCACTGCATCTTCAAGTCGGTGGATAAGAAAATGTTGGAGCACCATCTGCGCACCCAGTGCCTCAACCAAGAGAAGAAGTTCAAGTGCTCGCGCTGTGGTTACAAATTCATGTGGAGCGCCAATCTGGATCAGCACATGGCCAAGCAGCATGCCAAATCCTCTAATTCAACGCCCGCTGTGACCAAACGAAGTCGCCGCTTCCGATACCAATGCCCACACTGCTGGCGCTCCTTTGTGGTGCAACCCAGTCTAGACAAGCACATACGAGACATGCATGTGGCCAAGAAGAATCCTGGCAAGAAGTATCTTTGCTCCCTCTGCGGCCTGGAGTCGCTCACCCCCAACAAACTGAGCATTCACATGCGTCGTCATAATGGCGAGAAGCCCTTTAAGTGTGATCTCTGCGACATGTCCTTTACGGTTTACTACGAGCTCAAGGTTCACCGCAGGAAACACACGGGGGAGCGACCCTATCAATGCACCTTCTGTGCCAAGGACTTTGCGCGCCCCGACAAGCTGAGGCGACATGTCTACATGCACAGTGTGAAACGGTAG
Protein Sequence: MTRTCRVCGGADGRFWIETPVNKYAEKTFNQLLVELTRLEVAIDQADKLPPWLCRSCEQKLENAYDFVLQARETHELWMQKLATETALEDAEKGTLECLRETPIQLLEIEGVTIKMEPSTEPALPQADPAISVDPLIKKNLDETSDDDDDDDVPLKQRKAQNDRQSMQHKCNKCDKSFRYVTNLFRHKQRDHSPPKFKSKTEKCSAEGTESLSHNLLKSSMAAQSSANSDLDSETDNYYKCDQCDKSYKYIMVLIKHKHTAHGVNQLPAEPRPIRRTESGLEQATKVKTKPPSTDSLVHSIIKEVKIPEEDELDSTGGDNYYKCDQCDKSYKYIVSLIKHKHKEHNAYKDSNDEEEHEKATASTYATGAGSKPPRIDRRVKDFDEHRCKPNGSKEIQCMICLRRFVKLRELREHLRAHPRDFKFDGHGEPIERIAEGFYRTAVESTEMGLKIRILNDLKLGMFGRYYSITNEARYEMNLDSSDTDSDGEAGVVQRRSYSCELCDSPTAVWPRKFQLHQHHRQHHTWLEAPYVCQRCDSRFLSAQLLDHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQETYPCDQCSRSFQDKSAVTKHKLMHHDVGNELIPCRWCTRTFYRLALLHKHVKRHGFSGEDLPLAETLLADAAKTSGPKTILCKVCDMQFVTIADLRRHNSLQAHSGESSNYMISTENGFELQLDETDGSDEESTGATGRSYRCDLCDMTFQRRRDMSEHQYSLHTFDKLPHSCDHCIFKSVDKKMLEHHLRTQCLNQEKKFKCSRCGYKFMWSANLDQHMAKQHAKSSNSTPAVTKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVYYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00478898;
90% Identity: iTF_00478898; iTF_00471054;
80% Identity: -