Dpar001594.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila parthenogenetica
Gene Symbol
-
Assembly
GCA_035047505.1
Location
JAWNPM010000070.1:3895744-3898221[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.22 17 6.3 1.2 1 23 238 261 238 261 0.93
2 19 0.0028 0.21 12.3 0.2 3 23 269 289 267 289 0.95
3 19 6.8e-05 0.0051 17.4 3.1 1 23 338 360 338 360 0.99
4 19 2.4e-05 0.0018 18.8 1.0 1 23 366 388 366 388 0.98
5 19 8.2e-05 0.0062 17.1 3.5 1 23 400 422 400 422 0.98
6 19 2.2e-05 0.0017 18.9 1.1 1 23 428 451 428 451 0.93
7 19 2.1e-05 0.0015 19.0 4.3 1 23 457 479 457 479 0.98
8 19 0.00036 0.027 15.1 1.7 1 23 485 507 485 507 0.92
9 19 0.0083 0.62 10.8 2.9 1 23 513 535 513 535 0.97
10 19 1.4e-05 0.001 19.6 3.1 1 23 541 563 541 563 0.97
11 19 1.4e-06 0.0001 22.7 4.5 1 23 569 591 569 591 0.99
12 19 0.00043 0.033 14.8 1.3 1 23 597 619 597 619 0.96
13 19 0.00056 0.042 14.5 0.7 1 23 625 647 625 647 0.95
14 19 0.00019 0.014 16.0 1.0 1 23 653 675 653 675 0.96
15 19 7.5e-07 5.6e-05 23.5 2.1 1 23 681 703 681 703 0.99
16 19 0.00082 0.062 13.9 2.4 1 23 709 731 709 731 0.97
17 19 7.4e-06 0.00056 20.4 0.5 2 23 738 759 737 759 0.97
18 19 6.3e-05 0.0047 17.5 4.2 1 23 765 787 765 787 0.98
19 19 8.9e-05 0.0066 17.0 0.7 1 23 793 815 793 815 0.99

Sequence Information

Coding Sequence
ATGGACGATTTGTGCCGCTTTTGCACAATGCCCTGCTCCACACTTCAGAGTATATTCACGGAGCGAAACCAGACGGACAGTAAACCCAGCCTAGTGGAAATGCTAGAGTATTGTACAGACAAAGAAATCAAGGACACGGACTTGTTGCCCCAAAATATATGTGGTCCATGCCTGTCGGCTGCCATCAATGCATTTGAATTCAAACTTAGATGCGAACAAAGCGAAACATATTTTAAGGAACTCTTGAGCGAATGTGAAAAGCCTAAAATTAAGTGTGAAATGAGTAAAGTTTGTCGCTTCTGCACACTAAACTATGTGGCGCTTGAGAAAATATTCCCGGAGGGAGAAAAGACTGATGATAACAATTTGCTTATAGGCGTGTTGGAATTCTGTACAAACTGTGACATAAGCGAACTAGATGCATTACCTAAAAGCATATGCGGTCCCTGCATAGCAGCGGCCAGAAATGCATTTGAATTCAAACTAAAGAGCGAACAAAGCGAAACGTACCTAAACGAACTGCTTAATGAACGTGAGCAGAAGCCCAACACAGATGAACTCACCACAGGTGAGTGGGAAATCACAGAGAGCGTTTTTGATGAGCACGGAATTAAATTGGATCTTGAGGATAGTTTAGGAAACTACTCGGAATTTAATGAGTTTGTGCCAGAAGATAGCGACGGGGAAAGCGATGTGAGCTTTAAATTGGAATTTCAGTGCTGTACCTGCTCGGAACTCTTTGATAGCGAAACACTCTTGGACAGACATACAGAATTAGCTCACGTGGGAATGGAAATTTATGGTTGTGCCAGCTGCAAGGAATACTTCTCAACAAAGGAACTGCTTAAGGAGCACCAGATAGTTCACCAACAGCACAAGGATGAGCCCCAGGAAGAACACCAGGTAGAGCTCAATGATGAGCACCAGGAAGATCAACAAAAAAGTCAGCAAAAGGAGGACCATGAGAAACATCTAaaggagcaacagcagaaactTTTGCAAGAACGCCGCTTCAAATGTGATCAATGCTCGATGAGGTTTAAATACAATTACTTACTAAAACTGCACCTCCAAACCCATTCGGAGGAGCGTCCCTACAAGTGTGAGCTGTGTTCGAAAGGGTTCAAGACCAAAGCCGGAATGAGGAGACACAGAGAGATCCATGCGCTGAAAAGGGAACCTAAGGACAGGCCTCGTTTTAAATGCAAGCACtgcccaaaaatatttaaacatatattagACCTGACTAAACACCTAGCTATACATGTCGATGATCGTCCCCACAAGTGTGAAATCTGCGAAAAGAATTTCGAAAGACGATATGCCCTGCAAATACACATGGTGTTAAGGCATAACAAGGGGCGTAAATACAAGTGTGAGAAATGTCTCAAGACGTATACAACTAAATCCCAGCTAACTAGACACTCTTATACTCACGGCGAGGATCGTAACTACAAGTGTGAGGCATGTCTGAAGACGTTTAGAACAAAAACCGAGCTAAATAGACACTCCTATGCTCACAGCGGCGAACGGCGTTACCATTGTGAGAGCTGCTTGAAGGCATTTGGATCGCTCTTTCAGTTGCAGAAACACCAGTACTCACATTCCGAGCATCGTCCCCATAAATGTGAGCAATGCCCGAGGAAGTTTAAAGCAAAGTACGAGTTGAAAAGACACATGCAGGCCCACTCAATGAAACGGTCTTACAAATGCGACATCTGCCAGAAATCGTTTAAATACTCATCACATCTAAATGATCACAAACTGACGCATACCGACAAAAAACCATTTAAGTGCCAATTCTGCACAAAAGCATATAACGCAAGGAGTGCTCTAAGAAGGCATTTATCAGACCATTACGACGAAATGCCCCACAATTGTGAATACTGTCCGATGGCTTTTAAAACCGTCGAAGAACTGAATTCGCACACTGAGAATCATGGGCAGGAACCACCATTCAAATGCCGCAACTGTCCAAAGGCTTTTTACGATGAAACGGATTTGAAGCAGCACAGCGAGTCTCATGTGGTTATTCTGGAGTTCAAGTGTGATCAGTGTCCAAAGTCGTACAACACTAAGACGTTGCTGAACAGGCACATAAAGAGCCATTCCGATGAACGACTATACCGCTGTGATGCCTGTTTGAAAGCTTTTAGAACAGTACATGAGCTAAAAcggcatttaaattttcatgcCAGTGATCGGGACTTAAAGTGTACACTTTGCCCAAAGGCGTACAAAACAAAACCGGAGCTGAACAGACACCAAATCTCTCATTATTCCAATCTTTTCTATAAATGTGAGTATTGCTCCAAGCCGTTCAAAAGCAGGAGCGGATTACATTATCACAGGTCGATGCATACCGATGACCGTTCCTTCAAGTGCGAGCTCTGTCCGCAGGTGTACAACATAGAGAGCCAGTTCAAAAGACATTTGATGACACATGCTAGCGAATGTGAAGATGTTAACCTAGTCTAA
Protein Sequence
MDDLCRFCTMPCSTLQSIFTERNQTDSKPSLVEMLEYCTDKEIKDTDLLPQNICGPCLSAAINAFEFKLRCEQSETYFKELLSECEKPKIKCEMSKVCRFCTLNYVALEKIFPEGEKTDDNNLLIGVLEFCTNCDISELDALPKSICGPCIAAARNAFEFKLKSEQSETYLNELLNEREQKPNTDELTTGEWEITESVFDEHGIKLDLEDSLGNYSEFNEFVPEDSDGESDVSFKLEFQCCTCSELFDSETLLDRHTELAHVGMEIYGCASCKEYFSTKELLKEHQIVHQQHKDEPQEEHQVELNDEHQEDQQKSQQKEDHEKHLKEQQQKLLQERRFKCDQCSMRFKYNYLLKLHLQTHSEERPYKCELCSKGFKTKAGMRRHREIHALKREPKDRPRFKCKHCPKIFKHILDLTKHLAIHVDDRPHKCEICEKNFERRYALQIHMVLRHNKGRKYKCEKCLKTYTTKSQLTRHSYTHGEDRNYKCEACLKTFRTKTELNRHSYAHSGERRYHCESCLKAFGSLFQLQKHQYSHSEHRPHKCEQCPRKFKAKYELKRHMQAHSMKRSYKCDICQKSFKYSSHLNDHKLTHTDKKPFKCQFCTKAYNARSALRRHLSDHYDEMPHNCEYCPMAFKTVEELNSHTENHGQEPPFKCRNCPKAFYDETDLKQHSESHVVILEFKCDQCPKSYNTKTLLNRHIKSHSDERLYRCDACLKAFRTVHELKRHLNFHASDRDLKCTLCPKAYKTKPELNRHQISHYSNLFYKCEYCSKPFKSRSGLHYHRSMHTDDRSFKCELCPQVYNIESQFKRHLMTHASECEDVNLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00471013;
90% Identity
-
80% Identity
-