Dpar001590.1
Basic Information
- Insect
- Drosophila parthenogenetica
- Gene Symbol
- -
- Assembly
- GCA_035047505.1
- Location
- JAWNPM010000070.1:3871250-3873838[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3e-05 0.0022 18.5 0.4 1 23 258 281 258 281 0.97 2 21 4.1e-05 0.0031 18.0 1.9 1 23 287 310 287 310 0.93 3 21 1.7e-05 0.0013 19.3 1.0 1 23 317 339 317 339 0.96 4 21 0.00044 0.033 14.8 0.7 1 23 345 367 345 367 0.97 5 21 4.3e-07 3.2e-05 24.3 1.9 1 23 373 395 373 395 0.98 6 21 2.6e-05 0.002 18.6 0.5 1 23 401 423 401 423 0.98 7 21 3e-06 0.00023 21.6 0.8 1 23 436 458 436 458 0.96 8 21 0.00021 0.015 15.8 2.2 1 23 464 486 464 486 0.98 9 21 0.0045 0.34 11.6 2.0 1 23 492 514 492 514 0.97 10 21 3.1e-05 0.0023 18.4 0.8 1 23 520 542 520 542 0.98 11 21 0.001 0.075 13.7 2.2 1 23 548 570 548 570 0.97 12 21 7.1e-07 5.3e-05 23.6 0.7 1 23 576 598 576 598 0.99 13 21 2.9e-05 0.0022 18.5 1.1 1 23 604 626 604 626 0.97 14 21 6.1e-07 4.6e-05 23.8 0.3 1 23 632 654 632 654 0.99 15 21 5.9e-06 0.00044 20.7 3.0 1 23 660 682 660 682 0.97 16 21 1.7e-06 0.00013 22.4 0.4 1 23 688 710 688 710 0.99 17 21 0.00042 0.031 14.9 0.4 2 23 718 739 717 739 0.93 18 21 0.00073 0.054 14.1 2.3 2 23 746 767 745 767 0.96 19 21 0.00033 0.025 15.2 0.7 1 23 774 796 774 796 0.94 20 21 0.00024 0.018 15.7 1.0 1 23 802 824 802 824 0.94 21 21 0.00011 0.0086 16.6 1.5 1 23 830 853 830 853 0.94
Sequence Information
- Coding Sequence
- ATGGATGAGGTTTGTCGCTTCTGCACGATTCCCTGTTCCACACTGGAGAACATCTTTACCATGCAGGAGCAGACGGATACCGAATCACGCCTAGTAGCCATACTGGAGTGTTGTATCAACGAAGAAATCAGTGAATCCGATTCGTTGCCCCAAAAAATATGTGGGCCgtgcacaacagcagctaagAATGCCTACGCATTCAAGCTAAGAAGTGAGCAAaacgaaaaatattttaaggaaCTTGTCAGCGAACAATCTAAAATCAAGTTCGAAAAGGATGCAGTTTGTCGCTTCTGCACGGAGAACACTGCAGCGCTTGAAAAAATATTCCCCGAGCAGACTGACAACGAACCTCTACTTATCAGCGTACTGGAATATTGCACCAACTGTGACATCAAGGAATCGGATGCGTTGCCTCAAAACATTTGTTATGCCTGCATAGCAGCTGCTAgaaatgcatttgaatttaAGCTCAAATGTCAGCAGAgcgaaaagtattttaaagatCTGCTCATGAGCGAACAGAAACCCAACACAGAAGAACTCACTACAGGTGATTGGTGCATAACGGAATATGTGACAGAAGGAGTCCGCGTAAAGCAAGAACAGGATGTCGCTATGGAAGATGATGAATTCGAGGAAAGCGATCGAAGCTCTACAACAGAAGAATCTCATGAGTTATTGGAGGAAGAAGATGATTCAGAGAAAAGTGAAGAAAGCATAAAAGACGAAGTGTGTAAGCCAACCACAAGACTTAGCACTAAAGCGGACTTTCAGTGTTCCAGCTGCCCTATGACATTTGCCAGAAAAGCGTTGCTTGCGCGGCACACGCAACGAGTTCACTTAGGAATCAAAGGTCACATCTGTCCCACGTGCAAGAAGAGCTTTTCCACAAAGAAAGTTTTGAAGGCTCACAGGAACGCAGAGCACGCCGACGATCCACGGCCCTATAAATGTGATATGTGCCCCAAAGGCTTCAAGACCAAAAACGAATTGAAACTGCACAACTCGGTTCATTCTGACGAACGACCCTTTCAGTGCGACCTCTGCCCCAAGGCCTTTAAGCTGAACTACAGACTTACCCTGCACAAGCTAATCCACTCCGATGTGCGACCCTTTAAGTGCGAGGATTGCCCCAAAACGTTTAAATTCAAGTACAACCTGCAGCTGCACCAGGCGAGTCACTCCGATGCACGTCCCTTCCAGTGCGAGGTGTGCGCGAAAGCTTTCAAAACGAAAGCGAGACTGGCAAAGCACCGCAATATTCATTCCCAGAAAAGGGAGACGACGAGTGACAAACCTCGCTACCAGTGTGAACTCTGCCCAAAGACTtttaaaacgaaaatgaatcTGAAGCTTCACGGATCAGTGCATTCGGATGAGCGACCCTTTCAGTGTGAGCTCTGTTTGAAGACCTTTAAAAGGGATTTTGCTCTGAGAGACCACATGAAATTCCATTCCGACGAGCGGCCCTTTAAGTGTGAACATTGTCCGAGTGCGTTCAAAACCCAAACGATCTTGAACCGTCACAAAGATGTGCACAAGGACGAACGCCCCTTCCAATGTGACTTCTGCCCGATGACCTTTAAGAACAAACCCGATTTGAGTAGCCATCAAACGGTTCATATGAGCTTTCGTCCGTTCATTTGTGAGTTCTGTTCGAGTGCTTTTAAGACCAGATCCAACAtgaacaaacacaaattgtcGCACACAAACGAGCGGAATTTCAAGTGCAATGAATGCGGAAAAGCTTTTTACGCCAACAACGAACTGAACCGACATCTGCAGACTCATTCAACGGAAAGGCCTCACAAATGTgatatttgcttaaaaggATTCAAGACGAAAATAGAGCTAAGGAGGCACGTAATCATTCACTCGGAAGAACGACCCTACAAGTGTGAGGAATGTCCGAAGGCTTATAATTTGAAAAGCGAGCTAAATCGACACATTTTGACCCATTCGGGTCAAAGGCCGTACAAGTGTGATGACTGCGAGAAGACGTTCAAAAACATATCGCATTTGAATCAGCACAAGGTGATGCATTCCAACAAACGAACCTTCAAGTGTCAGATCTGCCCAAAGGCCTATAATCTGAACAGTGAGCTAAATAAGCATATTTTGACTCATGTGGAAAGGGGCACTGCCGTCAAATGTGACCACTGTCCACAGGCCTTTAGTAACATGTCTGAATTGAATATGCATAGTGTGATACATGATGACAGATCCGGCTTAAAATGTGAGCACTGCCCTATGTCATTTAATACCAAATTCGAATGGAACACGCACAGTTTGACTCATGCCGAAGAGTTAACCACCTTCAAATGTGACCACTGTCCAATGGCTTTTAATTCGTTATACGATCTGAATATGCACAGTGTGATCCATGCCGACGAACCCGCTTTCCAGTGTGACCACTGTCCAATGGCTTTTAACACCACGTACGATTTGAATACGCACAGTGTAATTCATTCAAGCGAGCCCGCCTTCAAATGCGAACACTGCCCAATGGCTTTTAGAAGTAGTTTCGACCTAAATATTCATAGCAAATTATTACACAAACAAAGCGACGACCTGGATGAGgcataa
- Protein Sequence
- MDEVCRFCTIPCSTLENIFTMQEQTDTESRLVAILECCINEEISESDSLPQKICGPCTTAAKNAYAFKLRSEQNEKYFKELVSEQSKIKFEKDAVCRFCTENTAALEKIFPEQTDNEPLLISVLEYCTNCDIKESDALPQNICYACIAAARNAFEFKLKCQQSEKYFKDLLMSEQKPNTEELTTGDWCITEYVTEGVRVKQEQDVAMEDDEFEESDRSSTTEESHELLEEEDDSEKSEESIKDEVCKPTTRLSTKADFQCSSCPMTFARKALLARHTQRVHLGIKGHICPTCKKSFSTKKVLKAHRNAEHADDPRPYKCDMCPKGFKTKNELKLHNSVHSDERPFQCDLCPKAFKLNYRLTLHKLIHSDVRPFKCEDCPKTFKFKYNLQLHQASHSDARPFQCEVCAKAFKTKARLAKHRNIHSQKRETTSDKPRYQCELCPKTFKTKMNLKLHGSVHSDERPFQCELCLKTFKRDFALRDHMKFHSDERPFKCEHCPSAFKTQTILNRHKDVHKDERPFQCDFCPMTFKNKPDLSSHQTVHMSFRPFICEFCSSAFKTRSNMNKHKLSHTNERNFKCNECGKAFYANNELNRHLQTHSTERPHKCDICLKGFKTKIELRRHVIIHSEERPYKCEECPKAYNLKSELNRHILTHSGQRPYKCDDCEKTFKNISHLNQHKVMHSNKRTFKCQICPKAYNLNSELNKHILTHVERGTAVKCDHCPQAFSNMSELNMHSVIHDDRSGLKCEHCPMSFNTKFEWNTHSLTHAEELTTFKCDHCPMAFNSLYDLNMHSVIHADEPAFQCDHCPMAFNTTYDLNTHSVIHSSEPAFKCEHCPMAFRSSFDLNIHSKLLHKQSDDLDEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00471011;
- 90% Identity
- -
- 80% Identity
- -