Dpar002493.1
Basic Information
- Insect
- Drosophila paranaensis
- Gene Symbol
- retn
- Assembly
- GCA_035047545.1
- Location
- JAWNPL010000026.1:14187159-14198120[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-26 5.7e-23 81.1 0.0 2 89 20 105 19 105 0.96 2 2 0.51 1e+03 0.2 0.3 7 47 254 300 238 313 0.66
Sequence Information
- Coding Sequence
- ATGCTCATCTCCGAGGATCAAATACAGGAgCTCTATGAAATCAACGATGATCCCAAGCGCAAGGAGTTCCTCGACGATTTGTTTTCGTTTATGCAAAAGCGCGGCACACCCATCAATCGGCTGCCCATCATGGCCAAATCGGTGCTGGACCTGTATGAACTGTACAATCTGGTGATAGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATTTGCCATCGAGCATCACCAGCGCCGCCTTCACGCTGCGCACACAATACATGAAGTATTTGTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCCGAGCTCCAGGCGGCCATCGATGGCAACCGGCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCGATGCACAATCAGATGCCGCTGACTCCCATTTCGCGTCCTTCTCTGCCTGGTGGCATGCAACAGATGTCGCCTCTGGCTCTGGTCACACACGCCGCGGCGGCCAACAATCAGCAggcgcaggcagcagcagctgctgccgcagcgcaCCGCCGACTGATGGGCGGACCGGCGTTTGGCCAGATGCCCAACCTGGTGACGCAGGAGATCGAGAACCGCATGATGGAGTATCTGCAGCTCATACAGGCCAAGAAGGAGCAGAGCGCTGGCCCCGTGCTGGCGGCTGCCACACacaaccaccaccagcagcagcagcaacaacaccaacagcagcagcagcagcagcaacagtcgctgcatcatcaccagcaacagcagcagcagcgacagcgctcCCAGAGCCCCGAGCTGAGCACGCGCGATGCGCTGAGTGCACAGGTGGCGCTGTGGCACATGTACCACAACAGCAGTCCGAATGGCTCGGCGCACACCTCACCACAGCAGCGCGAAGCCCTGAACCTTTCCGATTCGCCGCCAACTTTGAATCTGAATCACATAAAGCGAGAACGCGAACGCGATCCGACGCCGGAGCCCGCGGATCAGGACGAGACAGCGCACCAGCCGCCGCCCGCCAAGCGCGTGGGCAGCGGCCTGATGCCACCCGGTTTTCCCGCTAACTTCTACTTGAATCCACACAACATGGCCGCAGTGGCAGCCGCCGCCGGGTTCCATCACCAGGCGAACAGCGGCAGCCATCATCATCTgcaccagcatcagcagcagcagcacctgcaCCAGCAGGGGCAGCCGGACGCCGCGTCCGACGGCGAGCCAGAGGATGAGTATGGCAATGCTGAGCACAATACCACCGGCAACTCCTCGTCCATGCAGGACGACAgcgagccgcagcagctgaacgGGCATCACGAGCTCGACcatcatgatcatcatcaccatcaccatcagcatcatcatcatcagcagaaTCATCTGGATAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCACTTCCACCACGGCGTCCGCATCGGGCGGCCATCGTCACAGCTCGCCGGTCTCGACCAAGAAGAAGAGCGCCGCGAGCAAGGCACAATCCAGCCCCAAGGACACGCAGCACGAGAACTGCACagccggcggcagcagcggcggagGGGCCAGTGGCGTCAAGCTAAGTCCCCTCGAGACACTCAGCCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGCACCGGCGCAAACGGCGAGCAGCAGTTGATTGTCAATCTGGAGCTGAATGGCATTAAGTACTCGGGCGTGCTGGTGGCCAATGCAGGCGGGCTGGAGCGTCAGGAGCTGGAGCCCGAATCGGACAGCGATGCAGTTGCGCCCGCTGTGGAGGGCGCAGTCGAGGAGCCAGCGCCAGTGGAGGTCAAGGAGGAGGGCAGCCAGGAAGTGGGCcagacagaggcagcagcagcagaggaggaggaggacgaggaggagatgcagcaagagcagcagcagccaactgaAGACATTGTCAATGGGGGCGTAGGATtaggtgtgggcgtgggcgtgggtgtgggcgtgggcgtggggtCGCTGCTGAAGGATGCTGTGGCCAGTTCGTAA
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAGPVLAAATHNHHQQQQQQHQQQQQQQQQSLHHHQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPNGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADQDETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANSGSHHHLHQHQQQQHLHQQGQPDAASDGEPEDEYGNAEHNTTGNSSSMQDDSEPQQLNGHHELDHHDHHHHHHQHHHHQQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKSAASKAQSSPKDTQHENCTAGGSSGGGASGVKLSPLETLSLLSGMQFQVARNGTGTGANGEQQLIVNLELNGIKYSGVLVANAGGLERQELEPESDSDAVAPAVEGAVEEPAPVEVKEEGSQEVGQTEAAAAEEEEDEEEMQQEQQQPTEDIVNGGVGLGVGVGVGVGVGVGSLLKDAVASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00586459;
- 90% Identity
- iTF_00573096;
- 80% Identity
- -