Dpar013405.1
Basic Information
- Insect
- Drosophila paramelanica
- Gene Symbol
- -
- Assembly
- GCA_035043915.1
- Location
- JAWNMO010000678.1:1323849-1325462[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-16 1.1e-12 47.3 0.0 2 45 368 411 367 411 0.95 2 3 0.053 88 2.8 0.0 28 37 441 450 440 456 0.89 3 3 3.3e-19 5.5e-16 57.9 0.0 2 42 477 517 476 519 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTCGACCAGCAGAGCAACAATCAGCAATGCGAGGTCTTACTCGTGGCCAAAGACGGCATTAGTGTACGCGCCCATCTCTTCGTGCTGAGCACTTGCAGCGATCTGATGCGGAATTTGCTGGTCGATTTGCCCGCCGGCCAGGAGGCAACTGTCATCCTGCCCGATATTCGGGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATCTATATGGGCGAAACCAGCTTACCTTCTGCCCTGCTCACCGAGTTTCTGGAGGCCATCAATCTGTTGGGCATCAAGTCGGCCATTAGCTTTGAAACCAATCCCACAGCCGTGACCACCTCAAATGTTATTAGCGGCGCCATGGCTGTCGAGGCGGCCAAGTCAATAAGTGGCTTACATATCGCAAATACAGCCCTCATGgaggaggaagaggaggaAGAAGAACCTGGCGCTGTGGTCGGTAAATTGGAGGTGGGAACTGCTGTGCTCGCCAATCCACAACATCAGCACCACGAGCATGATGGCCGAACATTAGAATTCCTGGATATGTACGGTGATCAGCCCAAAATCACATATTCCATTGAGCACATGGGCGGCACTACCAGTGGAAACCAGTATATATTAACGGAGAACACGGGAACATTTACCATTACCCAATCTGCATCATCTGTGGCCAAACTGGGTGTATCGGGGACTTCAGCTGTTGTGGAAGCTGTGGCCACCGGTGAGCTGGGGGACGAGGATGTGGATGCTGATGTTACTGACGAGCACGACGAGTCCGAGTCTCAGTTAATCGAGGAGGAGTATGTTGCCTCCGCAGATCCCCTAATAGAAATGACCGCGGATGCAGATGGGGATGTTGATATGACCGAAGACGGAATGCACGAAGGCGAAGCCGGggatgaagaagaagatgatgaGCTCCTAGATGTCAAACCACACAAAGTTCAGCTAGATATGAAgatgttaaaaacaaagtcTCGCCAGCGTTCGCCTTCATCGAAGGTTACGAAAAGGACAATGACAAAGCAACATATACAGCAGGCCGCACTCAAAAAGGAAATGAAGGAAGAAATCAATGAAGCCCTTGACCTGGCCGCTGCGGCAGTACTGCATGAAGGAATCAGTCTTCAAAAGGCCGCCGATCGTTTTGACATATCAAAAACTGTGCTATGGCGACGTGTACGCTCGAATCCAGCCTACATGCGAATAAAGCGGGAAAAGCCATCGCTTTCGGAAGCATACGAACGTTTGAAGAGCGGTGACTCGCTGAAGAGCATTAGCCAGGACCTGCACATACCCATGTCAACGCTGCACCGGCACAAAGTGCGGCTGGCAGAACAAGGTCGTCTGCCCGATTTCGTTTCCTGCCGGCGGCGGGATAGCACCCCGAAAGATGAGCTGCGCGACAAACTGGCCAAGGCGGTGCACGCTTGCTTAAACGATGGCATGTCCCAAAACCATGCGGCAAATCTCTTCGAAATTCCCAAGAGCACGCTCTGGCGGCACTTGCAACGTCGCGTTACCGAGGCGGAGCGTAAAGTGAAGGAGGAACAAGAGGAAGAAGACGATGAAGATGCTCTCAACTAA
- Protein Sequence
- MGHSSTIMDIQRVLLDQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAVTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEEEPGAVVGKLEVGTAVLANPQHQHHEHDGRTLEFLDMYGDQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVAKLGVSGTSAVVEAVATGELGDEDVDADVTDEHDESESQLIEEEYVASADPLIEMTADADGDVDMTEDGMHEGEAGDEEEDDELLDVKPHKVQLDMKMLKTKSRQRSPSSKVTKRTMTKQHIQQAALKKEMKEEINEALDLAAAAVLHEGISLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKSGDSLKSISQDLHIPMSTLHRHKVRLAEQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACLNDGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEDDEDALN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00530367;
- 80% Identity
- iTF_00567638;