Basic Information

Insect: Drosophila paracracens
Gene Symbol: -
Assembly: GCA_035044025.1
Location: JAWNMN010001071.1:6731258-6735107[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.7 1.8e+02 2.9 5.8 2 23 366 388 365 388 0.96

2 18 0.84 55 4.5 0.0 1 23 395 420 395 420 0.93

3 18 0.019 1.3 9.6 1.8 2 23 431 452 431 452 0.93

4 18 5.3 3.5e+02 1.9 2.9 2 17 463 478 462 489 0.75

5 18 0.043 2.8 8.5 0.3 3 23 522 542 520 542 0.94

6 18 0.00092 0.061 13.8 0.3 1 23 550 573 550 573 0.98

7 18 3.5e-05 0.0023 18.2 0.2 2 23 578 599 577 599 0.97

8 18 9.5 6.2e+02 1.1 0.0 1 19 607 625 607 627 0.76

9 18 0.00032 0.021 15.2 0.3 1 22 647 668 647 671 0.90

10 18 1.2 77 4.0 3.7 3 21 678 696 678 697 0.93

11 18 0.0052 0.34 11.4 0.6 1 23 716 741 716 741 0.96

12 18 0.012 0.81 10.2 1.4 2 23 757 779 756 779 0.93

13 18 0.007 0.46 11.0 0.5 2 23 785 807 784 807 0.92

14 18 0.0082 0.54 10.8 0.2 2 23 811 833 810 833 0.96

15 18 0.0001 0.0066 16.8 4.4 1 23 839 861 839 861 0.98

16 18 0.0062 0.41 11.2 2.8 1 23 865 888 865 889 0.93

17 18 8.1e-05 0.0053 17.1 2.0 1 23 894 917 894 917 0.97

18 18 0.004 0.27 11.8 0.2 1 23 921 949 921 949 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.7	1.8e+02	2.9	5.8	2	23	366	388	365	388	0.96
2	18	0.84	55	4.5	0.0	1	23	395	420	395	420	0.93
3	18	0.019	1.3	9.6	1.8	2	23	431	452	431	452	0.93
4	18	5.3	3.5e+02	1.9	2.9	2	17	463	478	462	489	0.75
5	18	0.043	2.8	8.5	0.3	3	23	522	542	520	542	0.94
6	18	0.00092	0.061	13.8	0.3	1	23	550	573	550	573	0.98
7	18	3.5e-05	0.0023	18.2	0.2	2	23	578	599	577	599	0.97
8	18	9.5	6.2e+02	1.1	0.0	1	19	607	625	607	627	0.76
9	18	0.00032	0.021	15.2	0.3	1	22	647	668	647	671	0.90
10	18	1.2	77	4.0	3.7	3	21	678	696	678	697	0.93
11	18	0.0052	0.34	11.4	0.6	1	23	716	741	716	741	0.96
12	18	0.012	0.81	10.2	1.4	2	23	757	779	756	779	0.93
13	18	0.007	0.46	11.0	0.5	2	23	785	807	784	807	0.92
14	18	0.0082	0.54	10.8	0.2	2	23	811	833	810	833	0.96
15	18	0.0001	0.0066	16.8	4.4	1	23	839	861	839	861	0.98
16	18	0.0062	0.41	11.2	2.8	1	23	865	888	865	889	0.93
17	18	8.1e-05	0.0053	17.1	2.0	1	23	894	917	894	917	0.97
18	18	0.004	0.27	11.8	0.2	1	23	921	949	921	949	0.89

Sequence Information

Coding Sequence: ATGtcggaaaatgaaaaaactgaCGAAAATGTGCCTAGCTGCCTGCATTGCAGAGTGtacaattcaaaacaaaaatatcatgAGATATTCGACGAAGTCGGCATCGAAATAGAGCTCGCCAAACTCCTCGACAAGTATTTCGAGATAAAAGTTGAGCCCTCTGCTGGAAAACAGAAGCAACTGCTCTGCGAAGAGTGCGTTAATACGCTGATTCGTTTCTTCGACATCGACGAACTACAAAGGGAGCAAGATGccgcaaatgcagcaaatgccGCAAATGCCGCGAATGTCGCAAAGAAAAAGCCCAGTAATGATACAAAGTCTTCTGCACCCAAAAAGGATGAGAATCCCACCAAAAAGCAGACATCTGCCATTAAAACTAGCCAAGGTTCCCCAAACACCTCGGCGAATGCAGCCACAAAACAAGAGAAGCCAACGGCGgatgctgctgcgactgttaCGTCTGATACTGCCCCTGATGCCATTGCAAAAGGAGCTCCAGAAGCCGCTAACATACGGATCACCAGAGCCAGGAACGCTCCACCAAAAAGATTACCCATAAATAGAATGAAAGCAGTCAACCGAAGTGGAACCCTTAATGCCAAAGCAGGCGTCAAACGGCGTCGGTCCAGAGAAGCTGCGCAAGGATCAGGAGATCAGGAGCAGATTAGCGCACTCATACGTGACATTCTAGAGGACGTGGAGTCACCAGCGGATGAAAAATTGGTAGAAGCTGCAGCCACAGTCCGTCAGCTAGAGAAACAATCAGCTGAAGAGCAACggcagctggaggaggagggggAAAAAGAGCAAGCGGTGCTCGAGGACCAGGACAATAATGATGAGCTGGAATTCCTGGTTGAGCGTGAAGATAGCTCTTCGGAACTGAGCGTGCACCATTTCAAAGTGGAGCGAAAAATGAAACGCGCTCCTTCTCAGTCACAAAATGAGAGCCAAAGCGAGGATGAATCATTCAAAGTGGAGCCCTTTAATTTTGTGCTGATCAAGGAATCTGATAACATTGGCGATCTATACGAGTATTTGGGCAGCGTGGTGAAGACTTGTTTTGAGACATTGATGTTTGACTGGGACACTGTGTGCCGCCACTGCTCGCTGAAGTGCAGCAAATATCAAAGTTTATTCGGTCACATGCTGAGGCGCCACAAGGAGCCGGGCGTGATTTACAAGTGCCCGATTGCTGACTGCACGACAGTGCTACAGGGAGCCAAATCTTTGGCCATGCACCTGGTTGTGCTGCATGCGCCGGTAGCCGATATACCCATTTATGGCAGTTGTCCAGAATGCAACATGACCTTCTCAAACATATTGCAGTACAACAAGCACTCCTGCGCGCATGTCATCAAAAAGCGTCGCGGAATTCGCCTGTATTGTGAGATGTGCGGCTTGGAGTTCCCCTCCTGGAAGCGCTTTAATTTTCacaatcaatttcatttggaGCGTCACAGGCCACGCGCCTGTTTTGTGTGCAGCTACGCAGATACCAACATCGATGAGCTGTTCCATCATTTGCACTACGCTCACGAGCCAGAGGGCACGCTCTTCTGTGATCTCTGCGATCGCAATTTTCGAGATCCTGTCGTCTTTTTGGAGCACAACAAATCGCACTCAAATGTCAGCAGCACCACCTACACCTGCACCGAATGCAGCGCCAATTTTGAGTCACGTGGTCGTCTCAATGGACACTTGCGCACCGCACATGGCAGCGTCATCAGCTGCGAAATGTGCGGCCGCGAGTTTGCCACGGAAGCCACCTACAACCTGCACATGAAAACGCATTTGATTATTGAACGCGAGGTGCATGTGTGCAACAATTGCGGTCTGCTCAGCGAAAATAATGACAGGATGCTGGCTCATGTGGCGGATGAAGACTTGGGTTGCTTTGGCATGGATGTGGTAGTGGAAGTGATGCGTGATGCTTATGTTTGTGAGTACTGCTCCGCCTACTTTAAGCAGAAGAGTGATTTGAGCGCCCATCGCGATTCGGGGGTGCACAAGGATGGCCACTTCTGGTGTCATCCTTGCCGCAAGAAGTTTTCCGATATGAAGCTCTATCGCCACCACTTGCGCAACTATCAACAATTGCGCACAGATTTTTCGCATCGCCGGCTAGAAATTTGTCTCCACTATATGTGCGATTATGAGAATTGCAATGAGGCCTATATTAATTGGAACTCGCTTTATACCCACAAACGGCGTACACACGATGCCGCTGAGAAGCAGGAGCCGAAGATGAAAGATAACGAATGGATCTGTCAGTTCTGTCAGAAAGTGTGCCGCTCCAAAATGTCGCTCTCGGTTCACGTAGCgcgcagccacaacaacaATAATATGGTTTGCTCGCTGTGTAAAGCTTCGTATAAGGATGAGGAGGCCCTTAAAAAGCATCACGCCTATTGGCATGAGCGCATAGAGTGTCCGATGTGCTTGAAGGTGGTGAAGAATCGGCGCAACTTTGACACCCACGTAAAGGTGGTGCACTCAAACAACAAGCGTTACACGTGCAGCGAATGCCAAAAAGGTTTCTATCACAAAAGCGAAATGGAGGCGCATCATCGGCTGCATTCGCAATCGTTTAAATGCGAACAGTGCAACTTCACCACGAGGAACAAGAAATCGCTGTCGGTTCATGTGCTGGGTCAGCACCACAAGCGTTTTGCCTTCAAGTGTAAGTTCTGTGAAAAGCGCTTTGGACGCCGCCAGGGACTATCGAATCATATGCTACGTGTGCATGGCTCGAAGTATACATGTCGTGACTTTTTCGATGGCGGTTGTGGCAAATCATTTGGGTCGACGGCACGGCTCAACGTGCATGTGCGAAAGGCGCATAACAGCAGCCTCTTTCTGTCCGATGACCCAGCCAAACCGGTGGATAACgaagaggaggaagaggaggaggaggtgccGGCTGTGGAGAATGCTGAACGCGAAGGTCCGTCCACATCGAAGAAACGATTAATTCGCATCAATGCGAACACTGAGATCGAATTCATTGGCGATGCAGCTGAGGCCAATGATGACAATGAGCATCCGACTGATTCGGAAGTCTTCGATGAGTTGCAGGAGATCAAAGCACCAGCAAAGGCTCGGAAACGTTTGCGGAGTTTCGGGCTATTAaaagcatcagcaacaaaaaaaaacgaatag
Protein Sequence: MSENEKTDENVPSCLHCRVYNSKQKYHEIFDEVGIEIELAKLLDKYFEIKVEPSAGKQKQLLCEECVNTLIRFFDIDELQREQDAANAANAANAANVAKKKPSNDTKSSAPKKDENPTKKQTSAIKTSQGSPNTSANAATKQEKPTADAAATVTSDTAPDAIAKGAPEAANIRITRARNAPPKRLPINRMKAVNRSGTLNAKAGVKRRRSREAAQGSGDQEQISALIRDILEDVESPADEKLVEAAATVRQLEKQSAEEQRQLEEEGEKEQAVLEDQDNNDELEFLVEREDSSSELSVHHFKVERKMKRAPSQSQNESQSEDESFKVEPFNFVLIKESDNIGDLYEYLGSVVKTCFETLMFDWDTVCRHCSLKCSKYQSLFGHMLRRHKEPGVIYKCPIADCTTVLQGAKSLAMHLVVLHAPVADIPIYGSCPECNMTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCSYADTNIDELFHHLHYAHEPEGTLFCDLCDRNFRDPVVFLEHNKSHSNVSSTTYTCTECSANFESRGRLNGHLRTAHGSVISCEMCGREFATEATYNLHMKTHLIIEREVHVCNNCGLLSENNDRMLAHVADEDLGCFGMDVVVEVMRDAYVCEYCSAYFKQKSDLSAHRDSGVHKDGHFWCHPCRKKFSDMKLYRHHLRNYQQLRTDFSHRRLEICLHYMCDYENCNEAYINWNSLYTHKRRTHDAAEKQEPKMKDNEWICQFCQKVCRSKMSLSVHVARSHNNNNMVCSLCKASYKDEEALKKHHAYWHERIECPMCLKVVKNRRNFDTHVKVVHSNNKRYTCSECQKGFYHKSEMEAHHRLHSQSFKCEQCNFTTRNKKSLSVHVLGQHHKRFAFKCKFCEKRFGRRQGLSNHMLRVHGSKYTCRDFFDGGCGKSFGSTARLNVHVRKAHNSSLFLSDDPAKPVDNEEEEEEEEVPAVENAEREGPSTSKKRLIRINANTEIEFIGDAAEANDDNEHPTDSEVFDELQEIKAPAKARKRLRSFGLLKASATKKNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00496807;
90% Identity: iTF_00496807;
80% Identity: -