Dosh003660.1
Basic Information
- Insect
- Drosophila oshimai
- Gene Symbol
- Aef1
- Assembly
- GCA_018150695.1
- Location
- JAECWM010000147.1:1966512-1967483[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0064 56 3.9 0.1 21 46 127 152 123 155 0.88 2 4 1.3e-05 0.11 12.6 0.0 21 52 155 186 153 187 0.89 3 4 0.013 1.2e+02 2.9 0.1 21 48 183 210 180 214 0.86 4 4 3.7e-05 0.33 11.1 0.1 21 47 211 237 207 244 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGCCTGCCCCATGCCCATGCCGCTGCCACAGCGATGAGCAGCAACTGCGACATTGTTATTGTGGCCGCCCAGCCGCAAACCACCATTGCCAGCAATAACAACAATGATACGATGCACCTGAGCGGGATCTCGGCGGAGGCGCATAGTGCCGCCCAAGCAGCGGCCATGGCAGCGGCCCAGGCTGCAGCAGCTCAGGCGGCTGCGGCCGAGCAGCAGCCACCGCCACCACCACCGCATTTGACGCACCTGACCACGCACAGTCCAACGATCCCAAGCGATCACTACCTGGCTAACGGACACAGCGAACATCCAAGCGAAGGGGGTCCTGAGAGCGGGGTAGGAGTCGGAGGAGGAACCCGCGAGCCGGAGAAACCCTTCCACTGCACCGTGTGCGATCGTCGCTTCCGGCAGCTGAGCACACTGACCAACCACGTGAAGATCCACACTGGCGAGAAGCCCTACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACGAACCATTTGAAGATCCACACGGGCGAGAAGCCCTACAACTGCAACTACTGTCCCAAGCATTTCCGTCAGCTGAGCACTCTGGCCAACCACGTGAAGATCCATACAGGTGAAAAGCCTTTTGAGTGCGTCATCTGCAAGAAGCAGTTCCGGCAGAGTAGCACGCTCAACAACCACATAAAGATCCACGTCATGGACAAGGTCTACGTTCCTGTCAAGATCAAAACGGAGGAAGAGGAGGGGTGA
- Protein Sequence
- MMHIKSLPHAHAAATAMSSNCDIVIVAAQPQTTIASNNNNDTMHLSGISAEAHSAAQAAAMAAAQAAAAQAAAAEQQPPPPPPHLTHLTTHSPTIPSDHYLANGHSEHPSEGGPESGVGVGGGTREPEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00541297;
- 90% Identity
- iTF_00486807;
- 80% Identity
- iTF_00565601;