Basic Information

Insect: Drosophila ochracea
Gene Symbol: -
Assembly: GCA_035044125.1
Location: JAWNML010000003.1:9371417-9374961[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.5e-05 0.0022 18.2 5.3 1 23 173 196 173 196 0.97

2 16 0.0019 0.12 12.8 3.9 1 23 248 271 248 271 0.96

3 16 0.00085 0.054 13.9 2.8 1 23 337 360 337 360 0.94

4 16 0.0086 0.54 10.7 0.4 2 23 412 433 411 433 0.96

5 16 3.6 2.3e+02 2.5 3.0 1 20 546 565 546 567 0.85

6 16 0.02 1.3 9.6 0.6 1 23 576 598 576 598 0.94

7 16 0.00029 0.018 15.4 2.1 1 23 605 627 605 628 0.95

8 16 0.00046 0.029 14.7 1.4 2 23 636 657 635 657 0.96

9 16 0.016 1 9.9 0.0 2 20 684 702 683 707 0.89

10 16 0.12 7.4 7.2 0.9 1 23 745 768 745 768 0.95

11 16 1.5 94 3.7 2.2 1 22 775 796 775 796 0.93

12 16 0.00058 0.037 14.4 1.2 1 23 805 828 805 828 0.98

13 16 1.6e-05 0.001 19.3 0.5 1 23 849 872 849 872 0.97

14 16 0.099 6.2 7.4 0.2 1 23 882 904 882 904 0.94

15 16 2.5e-05 0.0016 18.7 3.3 1 23 910 932 910 932 0.99

16 16 5.3e-05 0.0033 17.7 0.9 1 23 938 960 938 960 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.5e-05	0.0022	18.2	5.3	1	23	173	196	173	196	0.97
2	16	0.0019	0.12	12.8	3.9	1	23	248	271	248	271	0.96
3	16	0.00085	0.054	13.9	2.8	1	23	337	360	337	360	0.94
4	16	0.0086	0.54	10.7	0.4	2	23	412	433	411	433	0.96
5	16	3.6	2.3e+02	2.5	3.0	1	20	546	565	546	567	0.85
6	16	0.02	1.3	9.6	0.6	1	23	576	598	576	598	0.94
7	16	0.00029	0.018	15.4	2.1	1	23	605	627	605	628	0.95
8	16	0.00046	0.029	14.7	1.4	2	23	636	657	635	657	0.96
9	16	0.016	1	9.9	0.0	2	20	684	702	683	707	0.89
10	16	0.12	7.4	7.2	0.9	1	23	745	768	745	768	0.95
11	16	1.5	94	3.7	2.2	1	22	775	796	775	796	0.93
12	16	0.00058	0.037	14.4	1.2	1	23	805	828	805	828	0.98
13	16	1.6e-05	0.001	19.3	0.5	1	23	849	872	849	872	0.97
14	16	0.099	6.2	7.4	0.2	1	23	882	904	882	904	0.94
15	16	2.5e-05	0.0016	18.7	3.3	1	23	910	932	910	932	0.99
16	16	5.3e-05	0.0033	17.7	0.9	1	23	938	960	938	960	0.98

Sequence Information

Coding Sequence: ATGACAAGAACGTGTAGAATCTGCGGTGGCGCAGATGGACGCTTCTGGATCGAGACGCCAATTGATAAATACGCGGAGAAAACATTCAATCACCTGCTGCTGGAGCTAACAAAACTCGAGGTCACTGTGGATCAAGCTGATAAGCTACCGCCATGGATCTGCCGCAACTGTGCGCACAAATTAGAAAATGCCTACGACTTTGTGCTGCAGGCGAGGGAAACTCACGAGCTTTGGCTGCACAAGATGACAACAGAATCTCTATCGGAGGACACCGAAACTGGGACATTGGAGTGCCTGCGGGAGACACCCATTCAATTACTGGAGATTGAGGGCGtcacaattaaaatggaaGAGGCAACTGAACCAGCCGTGCCACAAACAGATTCAGTCGGCTCGATTGATCCGCTAATTAAAAAGAGCCGAGAGGATGATGCCAgcaataatgatgatgacgctgatgatgatgatattcCGCTCAAGCAGCGCCGGATTGCAAGAACAAAACTGCCAACGATGCACAAGTGCAATAAGTGCGACAAGGCCTTCAAATATGTAACGAATCTCTTCAGGCACAAACGACGAGATCACTCTCCAGAGCACAGCCATATCAAAGAACAGGCAGCAGTGGAAAGAGAAAAGACTGATGGCATGAAACCGCTCTTAAACGATGTAATCAAGAGCTCTATtgcaacaacacacagcagCGAGGCAGACTTGGAAAGCGAATTGGCGGATAATTACTACAAGTGCGATCAATGCGACAAATCCTACAAGTACATAATGCTGCTGATCAGACACAAGCACAAGACGCACGCTTCCAGCCAGTGTCCAGCAGAGCCCAGACCAATTAGAAGAAGCGGTTCGAGTGCAGAGCAAACTAATACTAAACAAGGTTCACCGCCTCAGCGCTCGAAACCGACCAACACAGATTCGCTTGTGCACAGCATCATCAAAGAGATCAACTTACCCGATGAAGACGATGCAGACAGTTCCAGTGCCGACAATTACTACAAGTGCGACCAGTGTGACAAGTCGTACAAATACATTGTGAGTCTCATCAAGCACAAACACAACGAGCACAAGGAATACAGGGATTCCGATGAGGATGAAGATGGGGCAACGTCCTCCAGATATGCAGCAGATGCCACTGCTATGTCGAAGCCGTCGCGCATTGATCGTCGCGTCAAAGGCTTCGATTTGAATCGCTGCCGCCCAAACGGTTCCAAAGAGATTCAGTGCATGATCTGTCTGCGCAGATTCATCAAGTTGCGCGAGCTGCGTGATCACCTGAAAGCCCATCCTAAAGACTTCACATTCGATGCTCATGGCGAGCCGATTGAGCGCATTGCCGAGGGGTTCTATAAGACAGCCGTGGAATCCACAGTTGCGGGCCTTAAGCGACGGATCTTCAACGATCTGAAGGTTGGCATGCTCGGACGCTACTATTCCATAACAAATGAGGCACGGTACGAGATGAATCTGGACAGCTCGGACACGGACAGCGACGGCGAAGCGGATGTTGTGCAGCGGCATTCGTATGCCTGCGAATTGTGCGACTGCGCCGATGCCGTCTGGCCGCGCAAATATCAATTGCACGAGCATCATCGGCAGCAGCACACCTGGCTGGAAGCGCCGCACGTCTGCCAGCGCTGTGACTTCCGCTTCCTGAGCGCGCAGCTGCTCGAGCATCATACGCACAAGTTGTGCCAGAACACCCTGAAGCGTTTCATGTGCGACAAGTGTCCACAGCGCTTCTTTTGGCGACGCAATCTACGTGCGCATCTTGTCGAGCACAAAAACAAGCAGGAGACGTATCCGTGTGATCAGTGCTCGCGCAGCTTTCAGGACAAGAGCGCCGTGACGAAGCACAAGCTGATGCATCACGATGTACACAACGAGCTGTTGCCCTGTCGCTGGTGCACGCGCACCTTCTACCGGCCGGCGCTGTTGCACAAGCATGTGCAGCGTCACGGCTTTAGTGGGGAGGATCTGCCGCTGGCAGAGACACTGCTGGCGGATGCCGCCAAGCCATCCGGTACCAAGACGATTGTCTGCAAACTTTGCGATATGCAGTTCATTAGCATTGGCGACCTGCGGCGACACAACGCGATGCAGGCGCACAGTGAGCAGGTGTCCAACTATATGATAAGCACCGAGGAGGGATTCGAGCTGCAGCTGGATGAAACGGACGAGAGTGATGAGGAGCCCACAAGTACTGCTGCCAGCCGATCTTATCGATGCGATCTGTGCGAGATGAGTTTCCTGCGAAGGCGCGACATGAGCGAACATCAATATTCGCTGCACACCTTCGACAAGCTGCCACATTCTTGTGAGCATTGCATTTACAAGACAGTCGATAAGACCATGCTAGAGCACCATCTGAGCACACAGTGTCTTAACGAGGAGAAGAAATTCAAGTGCTCTCGTTGCGGCTACAAATTCATGTGGCGCGAAAATCTGGAGCAGCACATGAGCACTCTGCATCCAAAGTCATCATCTAGTCAGACGCCCATTGCGGCGACAAAGCGGAGTAGACGTTTCCGATACCAGTGTCCACACTGCTGGCGCTCGTTTGTAGTGCAGCCCAGCCTGGACAAGCACATTCGGGACATGCATGTGGCGAAAAAGAATCCCGGCAAGAAATATCTATGCTCGTTGTGCGGCCTGGAGTCGCTGACCCCAAATAAGCTCAGCATACACATGCGGCGTCACAACGGTGAGAAGCCATTCAAATGTGATCTCTGCGACATGTCCTTCACCGTGCACTACGAGCTGAAGGTTCATCGCCGCAAGCATACCGGCGAGCGACCCTATCAGTGCACATTCTGTGCCAAGGATTTTGCCCGGCCGGATAAGCTAAGACGGCATGTTTACATGCATAGCGTTAAGCGTTAA
Protein Sequence: MTRTCRICGGADGRFWIETPIDKYAEKTFNHLLLELTKLEVTVDQADKLPPWICRNCAHKLENAYDFVLQARETHELWLHKMTTESLSEDTETGTLECLRETPIQLLEIEGVTIKMEEATEPAVPQTDSVGSIDPLIKKSREDDASNNDDDADDDDIPLKQRRIARTKLPTMHKCNKCDKAFKYVTNLFRHKRRDHSPEHSHIKEQAAVEREKTDGMKPLLNDVIKSSIATTHSSEADLESELADNYYKCDQCDKSYKYIMLLIRHKHKTHASSQCPAEPRPIRRSGSSAEQTNTKQGSPPQRSKPTNTDSLVHSIIKEINLPDEDDADSSSADNYYKCDQCDKSYKYIVSLIKHKHNEHKEYRDSDEDEDGATSSRYAADATAMSKPSRIDRRVKGFDLNRCRPNGSKEIQCMICLRRFIKLRELRDHLKAHPKDFTFDAHGEPIERIAEGFYKTAVESTVAGLKRRIFNDLKVGMLGRYYSITNEARYEMNLDSSDTDSDGEADVVQRHSYACELCDCADAVWPRKYQLHEHHRQQHTWLEAPHVCQRCDFRFLSAQLLEHHTHKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQETYPCDQCSRSFQDKSAVTKHKLMHHDVHNELLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKPSGTKTIVCKLCDMQFISIGDLRRHNAMQAHSEQVSNYMISTEEGFELQLDETDESDEEPTSTAASRSYRCDLCEMSFLRRRDMSEHQYSLHTFDKLPHSCEHCIYKTVDKTMLEHHLSTQCLNEEKKFKCSRCGYKFMWRENLEQHMSTLHPKSSSSQTPIAATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00567692;
90% Identity: iTF_00570569;
80% Identity: -