Doch008361.1
Basic Information
- Insect
- Drosophila ochracea
- Gene Symbol
- retn
- Assembly
- GCA_035044125.1
- Location
- JAWNML010000050.1:5993060-6002897[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-26 5.7e-23 81.0 0.0 2 89 20 105 19 105 0.96 2 2 2.5 4.2e+03 -1.9 0.1 21 41 269 294 241 307 0.51
Sequence Information
- Coding Sequence
- ATGCTCATCTCGGAGGATCAAATACAGGAGCTCTACGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATGATTTGTTTTCGTTTATGCAAAAGCGAGGCACGCCCATCAACCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATCTGGTGATAGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCCTACGAGTGCGAGAAGAAGAACCTCAGCACTCCCGCCGAACTGCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCACTGACCACAATTTCGCGACCACCGATGCCTGGGGGCATGCAACAGATGTCGCCATTGGCGCTGGTCACACACGCGGCGGCTGCGAATAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatcgACGGCTGATGGGCGGACCGGCCTTTGGCCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAGTATCTGCAGCTCATACAGGCcaagaaggagcagcagcagcagcaacagaatgCGCCAGTTCTGGGCGCCACACATccccaccagcaacagcagcagcagcagcaacaatcgctgCATcatcaccaacaacagcaacaacaacagcagcagcagcagcgacagcgctCACCAAGCCCCGAGCTGAGCACACGTGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCTTTGAACCTTTCCGATTCGCCGCCAACTTTGAATTTGAATCACATAAAACGGGAAAGGGAACGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCACTTCAGCCGCCGCCGGCGAAACGTGTGGGCAGTGGCCTAATGCCGCCCGGTTTTCCCGCCAACTTTTACTTGAATCCCCACAATATGGCCGCTGTGGCAGCCGCCGCCGGTTTTCATCACCAGGCCGCcaacaatcatcatcatcatcagcaacagcagcagcagcaacaacaacagtcgcagcagcaggacaCTGTGTCTGAGGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCATAACACCACCGGCAACTCATCGTCGCTGCAAGATGAAAGTGAGCCACAGCAGCTGAATGGACACCACCtgcaccatcatcatcatgatcataACGATCTGCATCATGATCTGCATCAtgagcatcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCAcatcgacaacgacaacaacaacaacatcatcatccacATCCAAATCGCATCGTCACAGCTCGCCGGtgtccacaaaaaaaaagagcaccgtcaactgcaacagcagcagcaacaacagcaacaacaacaacaagacacaGTCCTTGTCGTGTGCGAAGGatgccggcaacaacaacagcagcagcagcagcagcagcagtgctaACGATGCCAAACTGAATCCCCTCGAGACGCTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGTAACGGCACCAATGCGAATGGCGAGCAGCAGTTGATTGTCAATCTCGAACTAAATGGCATTAAGTACTCGGGTGTGCTGGTGGCAGCCaaccaagcagcagcagttgcagcagcagccgcagcagccaaGCCAGAGGCAGGAGCAGGCACTGAGCGGCAGCAGGCAGTGAcgccaattgctgctgctgctgctgctgctgaggagCCAGCAgtgaggagcaacagcagcagcagcagcactgacGATGAGCTCAAGCATGAAAACAGCCAGGAACTTGGCCAGAACGAGGCAGCCGATGAGGAAACAAtgcaggaacagcaacaacaacagcagcaacaacaactcacaGATGAGATTGTGAATGGTGCAGGAATTGGGGGAGTTGGTATTGGGGTCAGCGGTGCAGTGGGTGCAAGTCTGCTTAAGGATGCTGTGGTCAGTTCATAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTTISRPPMPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQNAPVLGATHPHQQQQQQQQQSLHHHQQQQQQQQQQQRQRSPSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEETALQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHHQQQQQQQQQQSQQQDTVSEGEPEDEYGNGEHNTTGNSSSLQDESEPQQLNGHHLHHHHHDHNDLHHDLHHEHHHHHQNHLDKSDDSAIENSPSTSTTTTTTTSSSTSKSHRHSSPVSTKKKSTVNCNSSSNNSNNNNKTQSLSCAKDAGNNNSSSSSSSSANDAKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAANQAAAVAAAAAAAKPEAGAGTERQQAVTPIAAAAAAAEEPAVRSNSSSSSTDDELKHENSQELGQNEAADEETMQEQQQQQQQQQLTDEIVNGAGIGGVGIGVSGAVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570178;
- 90% Identity
- iTF_00516774;
- 80% Identity
- -