Dobs004510.1
Basic Information
- Insect
- Drosophila obscura
- Gene Symbol
- RREB1
- Assembly
- GCA_018151105.1
- Location
- NW:1318477-1328860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.034 2.1 8.7 0.8 1 21 248 268 248 270 0.93 2 12 0.00023 0.014 15.5 0.2 1 23 280 302 280 302 0.98 3 12 7.6e-05 0.0046 17.0 7.3 1 23 308 330 308 330 0.98 4 12 2 1.2e+02 3.1 3.7 2 19 580 597 580 599 0.97 5 12 0.038 2.3 8.5 0.0 1 23 754 776 754 776 0.97 6 12 1.2e-05 0.00071 19.6 0.7 1 23 786 808 786 808 0.99 7 12 0.00078 0.048 13.8 2.0 1 23 814 837 814 837 0.97 8 12 0.0028 0.17 12.1 2.0 1 23 1126 1149 1126 1149 0.95 9 12 8.1e-05 0.005 16.9 0.3 2 23 1563 1584 1562 1584 0.97 10 12 0.14 8.3 6.8 6.3 1 23 1590 1613 1590 1613 0.97 11 12 0.011 0.69 10.2 0.6 3 23 1818 1838 1816 1838 0.95 12 12 0.0013 0.077 13.2 4.8 1 23 1844 1866 1844 1866 0.99
Sequence Information
- Coding Sequence
- ATGTTGgcaacacagcaacagcagcagcagcagccccagccccagccaccacacgccgccgccgccaacgTAGTCACGCAGGCAGCGGTGGAGCGTCAGCGGCGCGAGTCCACCACATCGGAGTCCTCGCTGGAGCATCTCGACCTCGGCCGCACACCAAAGaagctgagcagcagcagcggcccaCAGCCCACATCGACGCCACACGACACGGCCCCAGCGACGGCGGTGATGTCAGCGTCGCGCAAGCGCAAGCTGCGACAGcaccaacagcaccagcagcagcagaatctgcacagcgacgacgaggaggaggaggaggaggagccacgTCCGCTGGAGGAGACGATGGCTGCTGTGCAGCAGCGGCCGCGACACAAGCAGCGACGCAATGCGAACGCCTCGGCGGCGGCCAGCGCCAGCATCGTGATGGACTACAGTGCCGGCGACGCCAGTTCGCTGCGCAAGAAGTTCCGGCTGAACCGCAGCGGCGCCACCGCCAACGGCGACCTCTCGGAGTCCGGTTTCGTGGACGCcagcagctacaacaacaGCCATGCCGCAGCGGCCGCCGTCtctgcagcagcgcagcaaGCGTCGAAtgcctccagcagcagcagcagcaacagcagcggcagtggcagcggcagcggcagtggcagctcgGGAGCCTCCTCGCCGGAGGGCCTGTGCCTGTCGAGCGGCGAGTCGGGCATCGGGGCCGGCGACGAGCACATGAAGTACCTCTGCCCCATCTGCGAGGTGGTCTCGGCCACGCCCCACGAGTTCACCAACCACATCAGGTGCCACAACTACGCCAACGGCGACACCGAGAACTACACCTGCCGCATCTGCTCCAAGGTGCTCTCCTCGGCCTCGTCGCTGGACAGACACGTGCTGGTGCACACGGGCGAGCGTCCGTTCAACTGCCGCTACTGCCACCTGACCTTCACCACCAACGGCAACATGCACCGGCACATGCGCACCCACAAGCAGCACCAGTCGACGACGACGCAGTCGTCTGCGGCGGCGCAGCAGTCGGTCGCGcagagcggcggcagcggctctctgtcgcagcagcagcgacgcctgtcacagcagcagctgcagcagcagcaacagcagcagtcactggcgcagtcgcagcaggttggtggtggtggtggtggtgctgggcaTCCGGGACGTGCGGAGAGCTATGAGAGCGATGCCAGCTGCTCCACGGATGTCTCCAGTGCACACAGTCATGCCAACAGCCAtgggagcaacagcaacaacaacaacaacaacaacaatccaCACAAagcgaacaacaacaacagcagcagcagcagccacaaggagatgcagcagcagcagctgcagatcCAGGAGCGGATCAAGCAGCGTCGCCCCAAGaccatcatcaacaacaacaacaacatcatcctCGACGAGGGCTCCCCGAGGGCAGCGGTGGAGCAGGAACTGGAGGAGCATGAGGAGCAGGACatgaaggaggagcagcccgATCCGGACAGCGACGAGGATGTGGCCATGCCGCTGTCCATCACCAGCACCCCGGATGTGGCCACCCTGCTGGCCGGCGTGAGTGCATCCTCGCGCGCTGAGTCGCGCTCCCGCTCCCCCTCGCCGGGCATGCCCCTGCTGAGCTGCCCCGCGTGTGGCGCGGCCGACTTTGAGACGCTGCCCGGCCTGTGCGCCCACCTGGACGCACGCCACTCGGACATACCCGCCAAGTGCCGCGACTGCGAGGTGATCTTCGCCAGCCACCGCCAGCTGCAGGCGCACTGCTGCCGCGGCCTGGTGGGGGTCGATCTGCCGCCGATGCTGGGTGCCAGCAGCTCGCCGCTGCACCAGGGCGAggcggatgaggatgaggaggatgccgaggacggggacggggacgagGCCCGCACCGAGCGGGAGGCGGAGCAGCGCGATGAGTTTTTCCAGCAGCTGTACCTCAAGGGCaaggcagccgctgccgcagcagcagcagccgccgggGCGTCCATTGGGGCCTCGTCGCCGCCGTCCCCCATCAAGCACGAGCCGGCGGACAGCAAGGATCTGGCCGACATCCAGAGCATCCTGAACatgaccagctccagctgcaccTCCAGCTTCCTGCGCAACTTCGAGCAGTCGGTGAACACGCCCTGCTCCAGCCAGTACAGCCTCGATGGCCGCgaccaggaggaggaggcccaGGACGTCTTCACCTCCGAGTTCCGGCGCATGAAGCTGCGCGGCGAGTTCCCCTGCAAGCTGTGCGCGGCCGTGTTCCCCAATCTGCGCGCCCTCAAGGGCCACAACCGGGTGCATCTGGGCTCCGTCGGCCCCTCGGGCCCCTTCCGCTGCAACATGTGCCCCTACGCCGTCTGCGACAAGGCGGCCCTCGTGCGGCACATGCGCACCCACAACGGGGACCGGCCGTACGAGTGCGCCGTCTGCAACTACGCCTTCACCACGAAGGCCAACTGCGAGCGGCACCTGCGCAACCGGCACGGCAAGACCAGTCGCGAGGACGTGAAGCGGGCCATCGTCTACCATCCGGCGGAGGATGCCAGCTGCGAGGACAGCAAGTCCCGGCTGGGGCTCGGCGACGATCTGGCCGATCTGAGCTTCCGCTCCATctcgccgccaccaccgccgccgccgccacccagTGCCCCGCTCGCCGACGGCGGCTCACAGCTGAAGCACATGCTCCTGGGCGAgccatcgacatcgacatcgccATCGACCTCGCACACTCCCACAGCAgtcgccgctgcagctgccgctggcgctgctgttgccgggcCACCGTCCAAGATCCAGGTGAAGAGCCTCGACCAGCTGGTGGACAAGAAGAAGCCCGCCGCAGGTGGCAGCCCTGCGCTCGACTTTAGCATGGATGTGCTGGATCTCAGCAAGAAGCCAACAGCGGGAGGATCTGCATCTGCCTccgcatcggcatcggcagccGCCACGGTGCCAGAACTGTCAGCCGtcctggagcagcagcagcagcagcagcaacagcagcagcagaacctgCTACTGGCCCAGCAGCATCTCTttggcggagcagcagcagcagccggagcagGCGATGCCGCCTCCCAGTACATGCAGCAGCTGTTCCGCAACCTCATGTTCCAGTCGCAGACGCTTCCCTTCTTCGGATTCAtggcgccgccgccgccgcagggCAATGCCGagaagcagccgcagctgaGTCCGCCCACGCGCATGGGCGgcctgccgctgccgatgccggtgggcgtgggcgtgccCGTGCCGCCCGGCGGCCCCGTCAAGATGGTCATCAAGAACGGAGTGCTGATgcccaagcagaagcagcgccGCTACCGCACCGAGCGGCCTTTCGCCTGCGAGCACTGCTCCGCCCGTTTCACCCTGCGCTCGAACATGGAGCGGCAcgtgaagcagcagcatccccaGTTCTACGCCCAGCGCCAGCGCAGCGGCCACCATGTGATGCGCGGCCGTGGAGCCTCCAATGCCGCGGCAGCTGTggccgcagccgccgccgcagcggcagccatGAGCCAGGGCGGATCCGGAGCGGGGGGCCATGTGCACGGCCATGCCCCCATTTCGGAGCAGGTGAAGTACGCCATCCTGGCGCAGCAGCTGAAGGCGCACAAGAACACggatctgctgcagcaggcgctGGCCCACGGCTCCAGCAGCGTGGCCGGCGGCAATCCCCTGCTGCACTTTGGCTACGGCCCCCCGCcccaggcgcaggcgcaggcccacgcccacgcccactcgcacggccacgcccactcccactcgcaGGCGCACGCCCAGTCGTCCAGTTCTGGCGCCCATCTGCCGCATCTGGTGAACGGGCTGCACAATGGGAACGGAAACAGTGGCAACAGTGGGATCATCGGTGGGATCGGTGGGCAGGCAAGTGCCATCGATGACGACGAGCCCAAGCTGATCATtgacgaggacgaggatggCGAGGGCGATGTGGAGGAGTTTgatgacgatgaggaggaggaggaggaggaggatgagccCGAGGACGAGGAcccggagccagagccaatgGAGGAGTCGGAGCAGCCGGAGGACGAGCAGGAGCTGCCCAAGCCACTGGAGCAGCCgagtgccgctgctgccgctgctgctgctgcatcggcCAATGAGGCGGCCAAGAAGATGGCCGATACCATCCTCGAGCAGGTGATCAAGGCgggcaagggcaagggcaGGGCCCACACGCCCACAGGCACCGTTACGCCGATGAGCACGCGCACGCCGTCACCCTCGCCGAGTGCATCGGAGGAGAGGATGCCGAGCAACGCGATGCCGGAGCCGAGTCCCCCGAATCCCACCATGAAGTCGATGATCGCCCAGGCCGAGTCGGTGGCCAAGTCGCTGAAGGAGGTGGCCAGCTCCCCGTTCAAGGACGAGTCGCAGGATTTGGTGCCGGTGGCCAAGCTGGTGGACAACGCCACCAGCAGCCAGATGAGCTTCAACAGCTACTTCCGGCCGAGCGACGTGGCCAACCACATGGAGCAGAGCGACGAGGAGGGCCTCGTCGCCTCCGGCAGCGCCAGCGAGAGCAACAACTCCGGCACGGAGGAcgtgaccagcagcagctccggcAGCGAGCCGAAGAAGAAGTCCGCCTACAGCCTGGCCCCCAATCGCGTCTCGTGCCCCTACTGCCAGCGCATGTTCCCCTGGAGCAGCTCCCTGCGGCGCCACATCCTCACCCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCCCTGCTCTTCACCACGAAGAGCAACTGCGACCGCCACCTGCTGCGCAAGCACGGCAACGTCGAGTCCGCCATGTCCGTCTACGTGCCCACCGAGGACGTCAGCGAGCCGATACCCGTGCCCAAGTCCGTCGAGGAGAtcgagctggaggagcagcgtCGCCGCCAGGAGGCGGAGCGGGAGCGCGAACGCGAGcgggagctgcagctggagcgggAGCGCGAGCGGGAGCTGGAGCGCGAGCGGGAGCTGGAGCGGGAGCGCGAAAAGGAGCGCCTGCTGCTCATCCAGAAGCTGGCGGCTCAGATGaatgctgccgccgccgctgctgcctctgcctcggcctcggcctcgTCCGATCCTGGCGCTGGCGGAGATCTGCCGTACAAGTGCCACCTGTGCGAGGGCTCGTTCGCCGAGCGGCTGCACTGCCTCGAGCACATCAAGCAGTCGCATGCCCACGACTttgccctgctgctggccaagggAGCCATCGAGCCGGAgtcggcaccggcaccggcctCGGCCCGTGGTGCCGGTGAGTccaaccaccagcaccagcagcagcagagcaccCCGGGCGCCGGGTCCGATGATGAGGCGAGTGGCGGAGGTGGCCGCGGTGGCTCCGGCAAGTATCCGGACTACAGCAACCGCAAGGTGATCTGCGCCTTCTGCCTGCGCCGCTTCTGGTCGACCGAGGATCTGCGCCGACACATGCGCACCCACTCCGGGGAGCGGCCGTTCCAGTGCGAGATCTGCCTGCGCAAGTTCACCCTCAAGCACAGCATGCTGCGCCACATGAAGAAGCACAGCGGACGCGCCCACAACGGCGACAATCCCGGCTCCGACTGCTCCGACGATGAGCAGGTCGCCACACCGCCATCCACCCCAGGTCCCCAGATGCCTTCGGCACCGGCCAcacccaacaccaacaccaccaccaacaacaacaacagctgccagaacaacaacaacaacaataacaccaatgccaatgccaatgccaattcGCACTCGAAGTTGGGTCTGCGTCTGCCGAAGCTGCACGAGCTGCTGGACAAGTCGAGCGAGTGGCGGGCCAGCCGCCTGGGCGAGCACAAGGAGAACATTGGGGAGGCGGCAACGCCGTCGGTGGCCGCGTCGGTGGCCAGCTCCGATCTGATCGGCAATCTGCTGGGCATCAGCGACCAGGGCATACTCAACAAGCTGCTCTCCTCCGCCGACGAGGCGGCCAAGCTGCTGGGCGTGGACAACAAGTAG
- Protein Sequence
- MLATQQQQQQQPQPQPPHAAAANVVTQAAVERQRRESTTSESSLEHLDLGRTPKKLSSSSGPQPTSTPHDTAPATAVMSASRKRKLRQHQQHQQQQNLHSDDEEEEEEEPRPLEETMAAVQQRPRHKQRRNANASAAASASIVMDYSAGDASSLRKKFRLNRSGATANGDLSESGFVDASSYNNSHAAAAAVSAAAQQASNASSSSSSNSSGSGSGSGSGSSGASSPEGLCLSSGESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENYTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQSTTTQSSAAAQQSVAQSGGSGSLSQQQRRLSQQQLQQQQQQQSLAQSQQVGGGGGGAGHPGRAESYESDASCSTDVSSAHSHANSHGSNSNNNNNNNNPHKANNNNSSSSSHKEMQQQQLQIQERIKQRRPKTIINNNNNIILDEGSPRAAVEQELEEHEEQDMKEEQPDPDSDEDVAMPLSITSTPDVATLLAGVSASSRAESRSRSPSPGMPLLSCPACGAADFETLPGLCAHLDARHSDIPAKCRDCEVIFASHRQLQAHCCRGLVGVDLPPMLGASSSPLHQGEADEDEEDAEDGDGDEARTEREAEQRDEFFQQLYLKGKAAAAAAAAAAGASIGASSPPSPIKHEPADSKDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSLDGRDQEEEAQDVFTSEFRRMKLRGEFPCKLCAAVFPNLRALKGHNRVHLGSVGPSGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREDVKRAIVYHPAEDASCEDSKSRLGLGDDLADLSFRSISPPPPPPPPPSAPLADGGSQLKHMLLGEPSTSTSPSTSHTPTAVAAAAAAGAAVAGPPSKIQVKSLDQLVDKKKPAAGGSPALDFSMDVLDLSKKPTAGGSASASASASAAATVPELSAVLEQQQQQQQQQQQNLLLAQQHLFGGAAAAAGAGDAASQYMQQLFRNLMFQSQTLPFFGFMAPPPPQGNAEKQPQLSPPTRMGGLPLPMPVGVGVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASNAAAAVAAAAAAAAAMSQGGSGAGGHVHGHAPISEQVKYAILAQQLKAHKNTDLLQQALAHGSSSVAGGNPLLHFGYGPPPQAQAQAHAHAHSHGHAHSHSQAHAQSSSSGAHLPHLVNGLHNGNGNSGNSGIIGGIGGQASAIDDDEPKLIIDEDEDGEGDVEEFDDDEEEEEEEDEPEDEDPEPEPMEESEQPEDEQELPKPLEQPSAAAAAAAAASANEAAKKMADTILEQVIKAGKGKGRAHTPTGTVTPMSTRTPSPSPSASEERMPSNAMPEPSPPNPTMKSMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSSQMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSGSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQEAERERERERELQLERERERELERERELEREREKERLLLIQKLAAQMNAAAAAAASASASASSDPGAGGDLPYKCHLCEGSFAERLHCLEHIKQSHAHDFALLLAKGAIEPESAPAPASARGAGESNHQHQQQQSTPGAGSDDEASGGGGRGGSGKYPDYSNRKVICAFCLRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRAHNGDNPGSDCSDDEQVATPPSTPGPQMPSAPATPNTNTTTNNNNSCQNNNNNNNTNANANANSHSKLGLRLPKLHELLDKSSEWRASRLGEHKENIGEAATPSVAASVASSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00474019;
- 90% Identity
- -
- 80% Identity
- -