Basic Information

Insect: Drosophila obscura
Gene Symbol: -
Assembly: GCA_018151105.1
Location: NW:11002348-11004345[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 7e-17 1.2e-13 50.2 0.0 2 45 343 386 342 386 0.95

2 3 0.0052 9.4 5.7 0.0 27 37 415 425 411 430 0.90

3 3 1.5e-19 2.7e-16 58.7 0.0 2 44 452 494 451 495 0.95

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	7e-17	1.2e-13	50.2	2	45	343	386	342	386	0.95
2	3	0.0052	9.4	5.7	27	37	415	425	411	430	0.90
3	3	1.5e-19	2.7e-16	58.7	2	44	452	494	451	495	0.95

Sequence Information

Coding Sequence: atgAATCACCTAAAATGGATGGGTCACTCGTCCACAATAATGGACCTACAACGCTCCCTGCGCAACGATATCCACACATGCGAGGTTGTGTTGGCCGCCAAAGACGGCTTCAGTGTACGCGCGCATTCCTTCGTGCTCAGCACATGCAGCGATCTGATGCGGAATCTCCTGGTGGATGTCCCGCCGGGCCATGAGGCCACCATAGTGCTGCCCGATATCCGAGGCGAACTGCTGGAAAGTATGTTGTCGTTCATCTACATGGGCGAAACAGGCCTGCCCTCGGTGCTGCTCACTGAGTTTCTGGAGGCCATCAACCTATTGGGCATCAAATCCGCCATTAGCTTCGAGTGCAATCCCTCCTCCAACGTGGACGTAGGCGCTGGCGCTTTGGCGGTGGAGGCAGCTAAATCAATCAGCGGCCTGCAAATCGCCCAAGCCGAGCTGATtgacgaagaggaggagggaCAGACACAGATGGGTGTGGCAGCCGCAGTCATGGCTGAAGAGCAGCCCCATCAGCCAGCAGCACACACCAGCCGTCCGCTGGAGTTTCTCGATGTGTACAACGAGACGCCAAAGATCACGTACTCCATTGAGCACATGGGTGGTCACTCGAACGGCAATCAGTTTATTCTAACTGAGAATACGGGAGCATTTACAATCACACAATCGGCGTCCAGTTTGTCCAAGCTGGAGACCTCCGAAAATGCGAACAGTGTCGGCGAGGTGGATATGGTGGAGGATGACGCGGAAGCGGATACCACCGAAGAGGAGCCGGAAACACAAATACTCGAGGAGGAATATCCCTCAGATCCATTGATTGAGATAAACGCCAGTGCAGATATGGACGACGATGAGATGCACGAGGATCTGGTGGATGAGGAGATGCTGGAAGTGAAGCCGCGCAAGCTGGCTGTGGCCAAGCCGAGAGGCCGACGCCCCAATCGGTCAAAGACTATGAAGCGACCGCCGcccaggcagcagccacagttTCTCACCCTCAAACAAGAAGGCAAAGATGACATTAACGATGCTCTGGATCTCGCGGCTGACGCTGTAATCCTCGAGGGTCTGAGTCTGCAGAAGGCTGCCGATCGTTATGATATCTCGAAGACTGTTTTGTGGCGTCGTGTGCGCACCAATCCCGCATATATGCGAAGCAACCGCGAGAGGCCATCATTGTCTGAGGCGTACGAAAGACTTAAAACCGGCGACTCGCTCAAGAGCATCAGCCAGGATCTGGGCATACCCATGTCCACCCTACATCGACACAAAGTTCGACTGTCGGCGCAGGGTCGCCTGCCAGACTTTGTCGCCTGCCGCCGCCGTGACACTACCCCCAAGGACGAGCTTCGCGAGAAACTGGCCAAGGCCGTCCATGCCTGCCTCAAAGAGGGTATGTCGCAGAACCATGCGGCCAATCTGTTCGAGATACCCAAGAGCACGCTCTGGCGTCACCTACAGCGTCAAATGGCCCTCTCGGATCGTAAGGTAAAGAAGGAGGAACAGGATGACTATGATGAGGAGATTCTGAACTAG
Protein Sequence: MNHLKWMGHSSTIMDLQRSLRNDIHTCEVVLAAKDGFSVRAHSFVLSTCSDLMRNLLVDVPPGHEATIVLPDIRGELLESMLSFIYMGETGLPSVLLTEFLEAINLLGIKSAISFECNPSSNVDVGAGALAVEAAKSISGLQIAQAELIDEEEEGQTQMGVAAAVMAEEQPHQPAAHTSRPLEFLDVYNETPKITYSIEHMGGHSNGNQFILTENTGAFTITQSASSLSKLETSENANSVGEVDMVEDDAEADTTEEEPETQILEEEYPSDPLIEINASADMDDDEMHEDLVDEEMLEVKPRKLAVAKPRGRRPNRSKTMKRPPPRQQPQFLTLKQEGKDDINDALDLAADAVILEGLSLQKAADRYDISKTVLWRRVRTNPAYMRSNRERPSLSEAYERLKTGDSLKSISQDLGIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELREKLAKAVHACLKEGMSQNHAANLFEIPKSTLWRHLQRQMALSDRKVKKEEQDDYDEEILN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00611273;
90% Identity: iTF_00514999;
80% Identity: iTF_00564034;