Dnov003319.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila novamexicana
Gene Symbol
nfxl1
Assembly
GCA_003285875.3
Location
NW:2323142-2326832[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1 1.3e+04 -8.1 6.4 15 19 145 149 144 149 0.82
2 20 0.064 8.2e+02 -0.3 0.4 4 10 180 186 179 186 0.95
3 20 3.2e-08 0.00041 19.8 15.5 1 18 194 210 194 211 0.98
4 20 0.83 1.1e+04 -3.9 2.8 6 10 237 241 236 241 0.89
5 20 4.8e-08 0.00062 19.3 17.0 1 19 247 266 247 266 0.98
6 20 0.55 7.1e+03 -3.3 0.6 5 10 290 295 290 295 0.92
7 20 5.2e-08 0.00066 19.2 15.1 1 19 301 321 301 328 0.95
8 20 0.44 5.6e+03 -3.0 0.5 1 7 345 350 344 352 0.49
9 20 7.9e-08 0.001 18.6 10.1 1 18 355 372 355 373 0.96
10 20 0.35 4.4e+03 -2.6 0.4 1 5 382 386 382 391 0.73
11 20 0.00018 2.3 7.9 17.2 1 18 407 424 407 425 0.97
12 20 1.7e-08 0.00021 20.7 14.7 1 19 434 452 428 452 0.90
13 20 0.55 7e+03 -3.3 2.0 6 10 480 484 480 484 0.98
14 20 2.6e-05 0.33 10.5 7.1 9 18 497 506 495 507 0.90
15 20 0.0053 68 3.1 5.6 1 11 519 528 519 529 0.95
16 20 0.43 5.5e+03 -2.9 1.4 6 10 584 588 583 588 0.88
17 20 7.5e-07 0.0095 15.5 5.5 1 11 594 604 594 605 0.96
18 20 0.011 1.4e+02 2.2 14.4 3 19 634 650 633 650 0.92
19 20 0.84 1.1e+04 -3.9 1.6 8 13 655 660 654 660 0.74
20 20 1.9e-07 0.0024 17.4 12.2 1 16 702 716 702 722 0.92

Sequence Information

Coding Sequence
atggaaaagtttAACAAAGCGCAGGCCAAAAACTTGGCAGCCGCACAGAAGCTTGTGAACGCGTACGCCTCCAGCTCGGAGGATGAAGGCGAACTAGATGAAAAGCATATACTTGATCTTTTATACAAGCATTACCAGGCCTCAACGGAGGCTCCAAGTAGGGACAATGTGAATCGCACTGCCACATTCCTGGAGAACACGCTGCACTCGGGCGCGGCGACGTGCTTGATATGCATTGGCAGCATTCGGCGCGTGGAGCCCATTTGGTCATGCAGAAGCTGCTATTGCTTCTTCCATTTGAATTGCATTCAGCGTTGGGCCAACGACAGCGTCATGCAGCTGAAGGTCAaggcggagcagcagcagacgggCCACTACAATCATCTGGGCGAGTATGTGCCGCCCAAGCGTCCGAAATCCTTGTACTGGTGCTGTCCACAGTGCCGCCGGGACTATCAGCCTGCCGATCGGCCCACACAGTATGAATGCTTTTGCGGCAAGGAGCTGAATCCGCAGCCACAGCCGTTTCTGGTGCCGCACTCCTGTGGCGAGATCTGCGCCAAACTGCTGCAGCCCAAATGCGGACACGACTGCAAGCTGCTTTGCCATCCCGGTCCGTGCCCGCCGTGTGCCCAGCTCGCGCAGAGCTCCTGCCTGTGCGGCAAGTCACCGAAGCGCAGCGTGCGCTGCATCGACAAGAACTGGCAGTGTCAGCAAAAGTGCCAAGAGCTTTTGTCCTGTGGCAAGCACAAGTGCAACCAGCGCTGCCATCGTCCTGGCCAGTGCCCGCcctgcagcagcaagagctCACAGCCCTGCGAATGCAAGCGCGAAGAAAAGGTCGTCAATTGTGCCGAGCCCAAATGGAAGTGCAACAATATATGTGGTGCTCCTTTTGCGTGTGGCCTGCATACTTGCGACAAGGTGTGCCACGCTGGACCTTGTGGCGGCGGCGAGTGTCCTCTGGGCGTGCGCAGCTGTCCCTGCGGCAAGAGCACCAGAGCTGGTGACTGCAGCGAGTTGGCGGAAACATGCGGCGACACCTGCCAGAAGCTGTTGTCCTGCGGCAAGCATAGCTGCGCCCAGCGCTGCCATCGTGGCGCTTGCAACTTGTGCCTGGTGCGCACCAAGAAGAAGTGTCGCTGCGGTCTGCACGAGAAGGAGCTGCCCTGCTCCAAGGAGTTCAACTGCGAAACCAAATGCAAGCAGATGCGCGACTGTGGCAAGCATGCCTGTAATCGCAAGTGCTGCGGCGACCAGTGCCCGCCCTGCGAGAAGATTTGCGGCAAGCAGCTGAGCTGCAACAAGCACAAGTGCCAGTCGGTGTGCCACAATGGACCCTGTTATCCCTGCAAGCTGGAATCCCAGGTGAACTGCCGCTGCGGTAAGACGCGTCGCAGCGTGCCCTGCGGCCGGGAGAAGAGCGCTTGCATTGTCTGCCAGGAGCTGTGCCGCATCACGTCCAAGTGTCATCATGCCATAAAGCATCGCTGCCACAAGGGCGAGTGCCCGCCCTGCGTGCAGCCATGTAGCCTGCCCAACGATACCAGCGGCTGTGGACACATATGCAAGGCGCGCTGCCACGCAGCACTGCGTGTGCCCAAGCCAGCGGATGCGCCGCGTGCGCAGCAGCACAAGTATGAATACCGTTCGCTGCCGCATCCGCGCTGCGAGGAGGGCGTCCGCGTTGCCTGCATTGGCGGCCACGAGCTGGCCATCTGGCCCTGCTGGAACTCGAAGCCCACGTCCTGCCAGCGCAAATGTGCGCGTCAATTGAAGTGCGGCAATCATCGATGCCAACTGGTCTGTCACGCGGTGCCCCAGCCTGAGGACATGAACCAGCAGGCGGGCTGTGCCAATTGCGAGGAAGGCTGCGCCATACCGCGACCCCCTGGCTGCACGCACGCCTGCACCAAAGGCTGCCATGCGCCGCCCTGTGCTCCGTGCAGCTTTGTCATCAAAAGCAAATGCCACTGCGGCCTCAACCAGGTCATGTACAAGTGCAGCGAGTACTTCGATCAGGACGAGGGCAGTGTGCAGCAGACTCTGGAGCGCCGGAAAAAGTTTGGCAGCTGCGGCAATCGTTGCCTCAAAAATTTCGAATGCGGCCATCGCTGCATAACCGTTTGCCATCCTGGCCCGTGTCCCAATCCGGAGCTGTGCCGGAAGAAGGTGCGCATCTACTGCGCCTGCAAGCGGCTCAAGTTGGAGATAGCCTGCGACAAGCATCGTGCGGGGCAAACTGAACTAAAATGCGATGCCAATTGTCTGGCAGAGCTGTCCAAGGCGAAGGCTacggaacagcagcagctggaacgTAAACTAAAGCAGGAACAGGAAAAGAATCGTCTGGAGCTGGAAAAATACGAGCAAAAGTTCGGCAAGCGCAAGCACAAGGAGCGCAAAGCTTTGGATGTGCAGCCCGCCAGCTATCACATCGATTGGCAACGTTGGGGCATCTATACACTGGCCCTGCTCGCCGTAATGGGCGCATTGGGCGTGGCATACTATGCGGACAGCTAA
Protein Sequence
MEKFNKAQAKNLAAAQKLVNAYASSSEDEGELDEKHILDLLYKHYQASTEAPSRDNVNRTATFLENTLHSGAATCLICIGSIRRVEPIWSCRSCYCFFHLNCIQRWANDSVMQLKVKAEQQQTGHYNHLGEYVPPKRPKSLYWCCPQCRRDYQPADRPTQYECFCGKELNPQPQPFLVPHSCGEICAKLLQPKCGHDCKLLCHPGPCPPCAQLAQSSCLCGKSPKRSVRCIDKNWQCQQKCQELLSCGKHKCNQRCHRPGQCPPCSSKSSQPCECKREEKVVNCAEPKWKCNNICGAPFACGLHTCDKVCHAGPCGGGECPLGVRSCPCGKSTRAGDCSELAETCGDTCQKLLSCGKHSCAQRCHRGACNLCLVRTKKKCRCGLHEKELPCSKEFNCETKCKQMRDCGKHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLESQVNCRCGKTRRSVPCGREKSACIVCQELCRITSKCHHAIKHRCHKGECPPCVQPCSLPNDTSGCGHICKARCHAALRVPKPADAPRAQQHKYEYRSLPHPRCEEGVRVACIGGHELAIWPCWNSKPTSCQRKCARQLKCGNHRCQLVCHAVPQPEDMNQQAGCANCEEGCAIPRPPGCTHACTKGCHAPPCAPCSFVIKSKCHCGLNQVMYKCSEYFDQDEGSVQQTLERRKKFGSCGNRCLKNFECGHRCITVCHPGPCPNPELCRKKVRIYCACKRLKLEIACDKHRAGQTELKCDANCLAELSKAKATEQQQLERKLKQEQEKNRLELEKYEQKFGKRKHKERKALDVQPASYHIDWQRWGIYTLALLAVMGALGVAYYADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00561426;
90% Identity
iTF_00491196;
80% Identity
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