Dnov003200.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila novamexicana
Gene Symbol
bab2
Assembly
GCA_003285875.3
Location
NW:492716-533875[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-17 2.1e-14 52.4 0.0 1 43 696 739 696 741 0.95

Sequence Information

Coding Sequence
ATGGATATGACCAAGGACATCATGGATTTCGAAAGGAAGCTCGAGAGCGAGCAGTACGAGCCCAGCGACTACACAATGGTTAATGCCGAGATGCCAAAGCAGTCGGAAGTGCAACCGGAAACGGAGACGGAAGCAGAAAGGGCCTACGAAACGGTCAACAAAACATTGGACGAAGCTCCAAACGAACAGCTGTCGTCCGcggagcagcaacaggagcaggaACGGGAGCTGCAGGTcaagctggagcaggagccgCTGGAGAAGCCGACGAGCGTGCTCCATGAACAGCCGCTGACGCCgccgccacgcccactcacCTCCAGTGAGGTGGTGGGCCACAGCGAACCGCTCGATCCGGAGCTGCGCGTTCAGCTGAACGCCAAGAAATCCCGCTCGCTGCCCGTCTCCCCACAGCCGCTGGTCGCGCACAATTTGGCGGCAATTGGACTCTTTGAATTTGGACAAACGCGCAGCAAGATGttgcagcaggagcagaagccAAAGCTTGGCCAGAAATTGACCCCAGTTGGAGTCGGAGTGGGTCTGGGCATGGGCAAGAGCTCGCCGGCGGACAATCAACAGTTCTGCCTGAGATGGAATAATTACCAGTCGAACCTGACGAACGTGTTCGACGAGCTGCTGCAGAACGAATCCTTCGTGGATGTGACGCTCGCCTGCGAGGGCCAGTCCATCAAGGCGCACAAAATGGTTCTGTCCGCCTGCTCGCCCTACTTTCAAGCGCTGTTCTACGATAATCCCTGCCAGCATCCGATTATCATAATGCGCGACGTCAACTGGTGCGATCTGAAGGCTCTGGTGGAGTTCATGTACAAGGGCGAGATCAATGTGTGCCAGGATCAGATCAATCCGCTGCTAAAGGTCGCCGAGACGCTCAAGATACGCGGCCTGGCCGAGGTGAGCGCCGGCTCAAGCGCTGCCGCCTCCTCGGGCGGCCTTGGGGGCGCCTCGCTGCTGCCCGAGCAGCGCATGACCGTCtacgacgaggacgaggatgaggatgagCTCGCCGCAGCTGCGGCCATACTGAGAGCCagcgaggaggagcaggaTGAGCATTTGGCGCCCAAACGCGCTCGgctgctggccaagctgcGTGCCGGCGACTCGGCGCTGGATCTCAATCAGCGCCAGCGCAAGCGTTCCCGCGACGGCAGCTATGCCACGCCCAgcccgctgccgctgcgcgcCGAGTCGCCGCAGCGTACGCCCAGCGCAGGCGCCGGCGCCGGCCAAAGCCAGCCGCTTTCCATGACCACATCGACAATTGTGCGCAATCCGTTCGCATCGCCCAATCCGcaggcgctgcagcagcagcccggcTGCGCCTCCAGCGCgtccagcagcggcagcagctcggcCGCCTCCACAGCCGGCAACTCGGCCAcctcctgctccagctccaactccaactcggGCGGCTCCTCGGCTGCTAATGCCTATCGCAGCTGCTCGCCGGccccaccgccgccgccgcccgcgGCGCACAGCAATGGCTCCGTCGCGGCGCTCAGCTCGCCCACCGGCAAGAACCAGGGCTCAGCTGGCGCTGCGCAggcgcagctgccgccgcacATGGCCGCCGCCGTGGCCGCTGCAGCACATCATGCCTCGGCATCGGCCTCGgccccgccgccgccgcccagtGCCTCGTCCATGCACCATCATgcggcagccgccgccgcccaacAGCTGGCCGCCCAGCATCAGCTGGCCCACTCGCACGCGGCCATGGCCAGCGCCCTGGGCGCCTCCcttgccgcagccgcagctggcgGCGCCGCAGCGCCGGCCGTTGGAGGCAACAGCGCCTCCTCGGTGGGCGGGCATCACGATGACATGGAAATCAAGCCGGAAATTGCCGAGATGATACGCGAAGAGGAGCGGGCCAAAATGATTGAGACGAGCGGACACGGCTGGATGGGCGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTATCAGTATCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACAAACCAACAGAATCTGGTGCAACAGCTGCGCTTTCGCGAACGCGGTCCCCTCAAGTCCTGGCGCCCGGAAGCCATGGCCGAGGCTATATTCAGCGTTCTAAAGGAGGGCCTCTCGCTGTCGCAAGCCGCTCGTAAATACGATATACCCTATCCGACGTTTGTGCTCTATGCGAATCGTGTGCACAACATGCTGGGCCCCTCTTTGGACGGCGGCACCGATCCACGGCCGAAGGCACGCGGTCGCCCCCAGCGCATTCTGCTGGGCATGTGGCCCGAGGAGCTCATACGCAGCGTCATCAAGGCCGTGGTCTTTCGGGACTATCGCGAGATCAAGGAGGACATGAGCGCCCATCAGTATGCCAATGGACAGGCGCATGGTGCGCACTTTGGTTCGGGCAATCCGACAGCTGCTGCCAATGGGTATCACAGTGCTGCGGTCAAGATGGCGCCGCCCGACGGCAGCAATCCGCTGAGCACGATGACAGAGACGCTGCGCAGACAGATACtctcccagcagcagcagcaccaacagcagcagcagcagcagcaacagcaacagcagcagtcgccGCATGTGCAGTCGATGAACATGTACAAGTCGCCAGCGTATTTGCAGCGATCCGAGATCGAGGATCAGgtgtcggcggcggcggcggtcgCGGCGGCGGCCAAGCATCAGCAGAGCGAGCGCCGCGGCGCCGAGAATCTGCCCGATCTGAGCGCCTTGGGGCTGATGGGCCTGCCCGGCCTGAATGTGCTGCCCAGcacgcagcagcaggcgggcCATCAGCGCGGCGCAGCCGGCGGCAACGGCggtggcggcagcagcgcagGCTCCGGTGCAATGCATCCCAGCGCGGCGAGCTATGCGCGCGAGTTGTCGCGCGAGCGTGAGATGTCGCGTGATCGCGAGCTGAAGGAGGCAATGCACGCCCGCCAATATGGCAATCAGTCGCGCGGTTCCAACTCGTCGACGGGCAGCAAATCGGCCGCAGGCTCGAGTCGGCCGGGCGCCGCATCGCCGTACTCCGCGCATCACTCGCACGGTCATTATGCCAAGCACGCCAAGGAGCAGCCGGGCTATGCGTACAACAAACGTTTTCTGGAGAGCCTGCCGGCGGGCATAGACTTTGAGGCAATTGCCAACGGTCTGCTGCAGAAGTCGGTCAATAAAAGTCCGCGCTTCGAGGACTTCTTTCCCGGCCAGGACATGAGCGAACTGTTCGCCGATGCTGGCGCAGCTGCCGGCCCCGGCTCCGCAGCggccgcggcagcagcagcagcagcagcggctgcctatgcgccggcggcggcggcaatgcGCGAATCCCCATTGATGAAAATcaagctggagcagcagcaggccgcCGAGCTGCCGCACGAGGATTGA
Protein Sequence
MDMTKDIMDFERKLESEQYEPSDYTMVNAEMPKQSEVQPETETEAERAYETVNKTLDEAPNEQLSSAEQQQEQERELQVKLEQEPLEKPTSVLHEQPLTPPPRPLTSSEVVGHSEPLDPELRVQLNAKKSRSLPVSPQPLVAHNLAAIGLFEFGQTRSKMLQQEQKPKLGQKLTPVGVGVGLGMGKSSPADNQQFCLRWNNYQSNLTNVFDELLQNESFVDVTLACEGQSIKAHKMVLSACSPYFQALFYDNPCQHPIIIMRDVNWCDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEVSAGSSAAASSGGLGGASLLPEQRMTVYDEDEDEDELAAAAAILRASEEEQDEHLAPKRARLLAKLRAGDSALDLNQRQRKRSRDGSYATPSPLPLRAESPQRTPSAGAGAGQSQPLSMTTSTIVRNPFASPNPQALQQQPGCASSASSSGSSSAASTAGNSATSCSSSNSNSGGSSAANAYRSCSPAPPPPPPAAHSNGSVAALSSPTGKNQGSAGAAQAQLPPHMAAAVAAAAHHASASASAPPPPPSASSMHHHAAAAAAQQLAAQHQLAHSHAAMASALGASLAAAAAGGAAAPAVGGNSASSVGGHHDDMEIKPEIAEMIREEERAKMIETSGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMSAHQYANGQAHGAHFGSGNPTAAANGYHSAAVKMAPPDGSNPLSTMTETLRRQILSQQQQHQQQQQQQQQQQQQSPHVQSMNMYKSPAYLQRSEIEDQVSAAAAVAAAAKHQQSERRGAENLPDLSALGLMGLPGLNVLPSTQQQAGHQRGAAGGNGGGGSSAGSGAMHPSAASYARELSREREMSRDRELKEAMHARQYGNQSRGSNSSTGSKSAAGSSRPGAASPYSAHHSHGHYAKHAKEQPGYAYNKRFLESLPAGIDFEAIANGLLQKSVNKSPRFEDFFPGQDMSELFADAGAAAGPGSAAAAAAAAAAAAAYAPAAAAMRESPLMKIKLEQQQAAELPHED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00616826;
90% Identity
iTF_00563240; iTF_00616826; iTF_00616970;
80% Identity
iTF_00563240;