Dnov009596.1
Basic Information
- Insect
- Drosophila novamexicana
- Gene Symbol
- lov_1
- Assembly
- GCA_003285875.3
- Location
- NW:987828-1005962[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.99 2.1e+03 -2.0 0.1 1 11 148 158 148 161 0.88 2 2 6.8e-19 1.5e-15 56.2 0.0 1 44 891 934 891 935 0.96
Sequence Information
- Coding Sequence
- ATGTTAAAGGACGCCGAGGAGCTGATAAAACGCTGCAAACTGACGTCGCTGCCGTTGGCGCTGCATATGAACGAGTTCGGCCGCCAGGTGGCGCCAGCGCCGCTTGCGTTGCCGCTGCTAGCAAAGCCGCCCACAACGCCTCCGGGCATGGGCACGGGCACGGGCACGACCGGAGCGGGCGCggatcatcatcagcatcatacGCATCATCAGATGGCAATGCCGatgccactgccgctgccaatGCCGGCGCCTTCGAcgcacagccacgcccatggATCAATGCACACAACACCGCCCACAACGCCGCCCACGCCGCCAGCGCTGCCGCTGAACATGAGCCAAGCGGCGACCACAACGGCAACCACAACggccacaacagcagccgcagcggcggccgcggcggcggtggcggccaCGACAACGCACAGTCcacctgccacgcccacagcgaTTAGTGCCGCTCTAGCGGCCACACAGGATCATTATAGCCTGCGCTGGAACAACCATCAGAATCACATATTGCGCGCCTTCGACGCCCTGTTGCAGACCAAGACCCTGGTGGATGTGACCCTCGTCTGCGCGGAGACCTCAATACGGGCGCACAAAATGGTTCTGTCCGCCTGCTCGCCGTTCTTCCAGCGCGTCTTCGCCGAGACGCCCTGCAAGCATCCGGTGATCGTGCTGAAGGACTTTCGCGGCTGGGTCGTTCAGGCCATTGTGGACTTCATGTACCGCGGCGAGATCAGCGTGCCCCAGCAGCGCCTCCAGACGCTCATCCAAGCGGGCGAGTCGCTGCAGGTGCGCGGCCTTGTCGAGAGCTCCGTGCCGGAGCACACGCCCACTCCGGCGGCCTCGCCCGACGACTTCAACATGCTGGACGCCTCGTCGCTGCTGTCCTCCAGCTACGAGGACGAGTCGCCCTCGATGGTCAGGCCAGCGTCTGGCAAGCTGATCATGCCCAGCCGGCTCTTTGGCAATCCGGCTAGCGCCATGGCGGCGCTCAGTCTGCGCCGCAAGCGGGAACAAGAGTGCGATCGGGAGCCGGAGAGCGATCAGGAGCTGGGCGGCAGTTCACCCATGCCGCGACGCAAGCAGGCTCGTCCACGGCGACGCTCGGGCGATGTTCCACACGACTTTGGGCTCAACAAGCCGGAGACTTCGGAGACGGCGGCGCTGCAAACTGTGATCAAACATGAGCTGCGGGAGGAGCAGGAGCCGGAACAGGAGCAGAGCGAAAAGCGTTCTACAGTGGACGAGGCCAGCCCCATGGAGCAGGATGAGCAACAGTCCCAGCAAACAAATGAGCCCGAAGATGAAGTCGAGCAGCGAGAGTCGGGCGGGCACAGGGAGCCGCAGCAGGAGCGCGCGTTACCCCTTATCACGCCCGGCAGCAGCAATCAGCAGGCAGAACAGGAGCTCGATGAGGAAGAGGACGAGGATCAGGAGCGGGAGCACGAGCACGAGCACGAGCAGGAGGAGCATGAGCATGAACACGAACACGATCAAGTTCACGAACATGATCAAGATCCAgatgaggacgaggacgaggagcAGGACATTGAAGAGCTTATACATACGACCAACGAGTTGCGGCGACAGGCGGCAGTGGCCGCCGCCAATGCGGCTGCCATGTCGCCCTGTCCCAGCGATGGGCCCGAGGATCTGTGCACCACCAAAAAGGACAAGCAGGATACCAGCCACGCGCACTCCTCGGATGgcgagagcaacaacaacaacaacaacaataacagcagcaagcTGCAGGACAACAACCAACGCATCATGTTGTCCCTGAAGGACATCAGACAGCTGAACGCCAAGCCCAGCGCCACATCGACGCCCAGCCACACGCCGAACAGCAGCTGTGCGCCGGGCAACAATGGGCTCATGTCCTTCCCGCCGCCAGGTATGCGTCCGCCCGGCCTGCCCGACAGCCCGCCCTGCCACATGGAGGCGCTGGAAGCGCAAATGCACGCCgcggccgctgccgccgtAGCCGCAGCAGGCGCCGGCGAGAATCCGTTTCATCACATGGAACACCAAATGGAAATGTCGCTGGCCGCGGCcgccgcagcggcagccatGCACCAGCGTGAGCCACGCGATCTCCGAGAGAGTCGGGAGCAGGCGCTGCAGCGGGAACACAATGCATTCGCCAGTAATCTGCTGGGGCCCATGGGACTGCCGCCCTTCGGAGGACACAACGGAGCGCCGGGTCCGGGCTGTCCGGGTCAGGCCCCGCACGAGCGGCTCGAGGAGAGCATGAATCGGCTGAGCAAGGAGTTTGGCAAAGAGTTCAGCAAGGAGTTTGGCAAGGAGTTTGGCAAAGACTTTGGCAAAGACTTTTGCAAGGAGTTCGCACCCACCTCGCCCATGAGCCTGCCTGGCCACTATAATCCACAGGACGGACAGCCGCATCCGCCGTCGCCACTGCCCTTTCCCGGCATGTCCTCGGCGTTAACGCTAACGCCGCCGCACATGTTTGGCCTGGACTCGCCGCTTGGCCTATTTCCGCCCGGCATTGATCCTGGAAAACTCTACAATCCGCTAATGGAAATGAGCGATCCACGCGATATGCCCGGCGGACCGCCGCCGTTTctcaaaaagaaaaTGCCACGCCCCAAGGGACAGCATTCGGCGCCACGCGGCGGTCCGCCGCGCTCGTGGACCAACACGGAGCTAACGGAGGCACTGCAACACGTGTGGAACAAGAAGATGACCACGTCGCAGGCCTCGCGCATCTTTGGCATACCCTACAACTCGCTCCTCATGTACGTGCGCGGCAAGTATGGCAAAAGTCTgaagctggagcagctgcgcaAGGACTGCATCAGCGGGCCGCCTATCGAGATGCTGCAGATGGGCatcagcggcggcggcggctccaAAAGCGAGAAGAAGGAGCGCAAGGAGAAGGACAAGGACAagaatgccaatgccaattcGGGCTCCAATAATGGCTCCTCCGGtggcaacggcaatggcaatggtggtgctggtggtggcggtggcggtggtggtggtggtccGCCGGCCATGCCACATCCCAGCGATTTAGCTGGACTGGGTCCGCTCGACTTGGAGCTGGGCCTGCCGCTGGGTCCGCCCGCTGGTCCGCGCAGCGGCAGCTCCGAGCCAGATATGCTGGGCGGACCCAATGCACTGTTCAATCCCTTCAATCCGCAAGGCTTCTATCCGGACTTTGCCGGCGGCTTTCCGGGCCTGCCGCTCAGCATGCTGAACCTGCTGCCGCCGGCGGAGCGCCACCATGCGGCCGTGGCCATGCACCATCTGGGCGTCAGCATGGACGAGGACTGCAAATCGGTGGGCTCCAAGCAGTCCTCCTCGCTGGACGATGACTTCGCCGCCGGCCTGCCGCTGGCCCTCGAGCAGCGCCGCCACAGCGAGCTGTCCAGCAATGGGTCGACGCTGGCGCAGGCGAATGGCGGGGCGCAGGATTGA
- Protein Sequence
- MLKDAEELIKRCKLTSLPLALHMNEFGRQVAPAPLALPLLAKPPTTPPGMGTGTGTTGAGADHHQHHTHHQMAMPMPLPLPMPAPSTHSHAHGSMHTTPPTTPPTPPALPLNMSQAATTTATTTATTAAAAAAAAAVAATTTHSPPATPTAISAALAATQDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFNMLDASSLLSSSYEDESPSMVRPASGKLIMPSRLFGNPASAMAALSLRRKREQECDREPESDQELGGSSPMPRRKQARPRRRSGDVPHDFGLNKPETSETAALQTVIKHELREEQEPEQEQSEKRSTVDEASPMEQDEQQSQQTNEPEDEVEQRESGGHREPQQERALPLITPGSSNQQAEQELDEEEDEDQEREHEHEHEQEEHEHEHEHDQVHEHDQDPDEDEDEEQDIEELIHTTNELRRQAAVAAANAAAMSPCPSDGPEDLCTTKKDKQDTSHAHSSDGESNNNNNNNNSSKLQDNNQRIMLSLKDIRQLNAKPSATSTPSHTPNSSCAPGNNGLMSFPPPGMRPPGLPDSPPCHMEALEAQMHAAAAAAVAAAGAGENPFHHMEHQMEMSLAAAAAAAAMHQREPRDLRESREQALQREHNAFASNLLGPMGLPPFGGHNGAPGPGCPGQAPHERLEESMNRLSKEFGKEFSKEFGKEFGKDFGKDFCKEFAPTSPMSLPGHYNPQDGQPHPPSPLPFPGMSSALTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNTELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIEMLQMGISGGGGSKSEKKERKEKDKDKNANANSGSNNGSSGGNGNGNGGAGGGGGGGGGGPPAMPHPSDLAGLGPLDLELGLPLGPPAGPRSGSSEPDMLGGPNALFNPFNPQGFYPDFAGGFPGLPLSMLNLLPPAERHHAAVAMHHLGVSMDEDCKSVGSKQSSSLDDDFAAGLPLALEQRRHSELSSNGSTLAQANGGAQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00534666;
- 90% Identity
- iTF_00563259;
- 80% Identity
- iTF_00563259;