Dnov007057.1
Basic Information
- Insect
- Drosophila novamexicana
- Gene Symbol
- -
- Assembly
- GCA_003285875.3
- Location
- NW:2632954-2634781[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3 6.4e+03 -3.5 0.1 9 18 248 257 248 257 0.89 2 4 7.2e-17 1.5e-13 49.7 0.0 2 45 370 413 369 413 0.95 3 4 0.032 68 2.8 0.0 28 37 443 452 442 458 0.89 4 4 8.5e-21 1.8e-17 62.3 0.0 2 42 479 519 478 521 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGGCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTGCATCAACAAAGCAACAATCAACAATGCGAGGTATTGCTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTTTTCGTACTGAGTACGTGCAGCGATCTGATGCGCAACCTGCTTGTCGATTTACCCGCCGGCCAGGAGGCAACTGTCATCCTGCCAGACATTCGTGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGAGAGACGAGCTTACCCTCCGCCCTGCTCACCGAGTTTCTCGAGGCCATTAATCTATTGGGCATAAAGTCTGCCATTAGTTTCGAAACCAATCCCACAGCCATGACCACCTCAAATGTCATAAGCGGCGCTATGGCGGTCGAGGCAGCCAAGTCAATAAGCGGCTTACACATTGCGAATACAGCTCTtatggaggaggaggaagaggaaGATGCTAGTGCGGTGGTCGGTAAACTGGAGGTAGGCAATGCAGTGCTCGCAAacccccagcagcagcacgaacAAGAAGGCCGAACCTTGGAATTCCTTGATGTGTATGGTGAACAGCCCAAAATAACGTATTCGATTGAGCACATGGGTGGCACAAGCAGCGGCAaccaatatatattaacagaGAACACGGGAACATTTACTATAACACAATCAGCATCGTCTGTGGCTAAATTAGGTGTGGCAGGAAGTTCCGCTGTGGTGGAATCTGTGGCGACTGGTGAGATGGGCGATGATGATGCAGAGGCTGAAAATACGGACGAACAGGACGAATCGGAGTCACAGTTAATTGAGGAGGAGTATGTTGGATCAGGTGATCCTTTAATAGAGATGACCGCAGATGCGGATGTTGATATGCACGAAGATGGAATGCATGAAGGCGAACCTGGAGACGAGGAGGAAGATGATGAATTGCTGGATGTGAAACCCCGAAAAGTTCATCTAGATATGAATATGATAAAAGCAAAGGCACGCCAACGGCCAATGTCGGCAAAGGTTACAAAAAAGACAATGACAAAACAGTATCAACAACACGCCGCActtaaaaaagaaagcaagGATGACATCAATGATGCCCTCGatctggcagcagctgccgtaCTCCACGAAGGGCTCAGCCTGCAAAAGGCTGCCGATCGCTACGACATATCGAAAACCGTGCTGTGGCGACGAGTGCGCTCCAATCCGGCCTACATGAGGATAAAGCGTGAAAAGCCATCGCTTTCGGAAGCATACGAGCGCTTAAAAAACGGCGACTCGTTGAAAAGCATAAGCCAGGATCTGCATATACCCATGTCGACGCTGCACCGACATAAGGTGCGGCTGGCGGAACAGGGACGCCTGCCCGATTTTGTTGCTTGCCGGCGGCGGGATAGCACACCAAAGGATGAACTGCGCGACAAGCTTGCCAAAGCGGTGCATGCCTGCATAAACGGAGGCATGTCGCAAAATCATGCAGCAAATCTCTTCGAAATACCCAAAAGCACGCTCTGGCGGCACTTGCAGCGCCGCGTGACCGAGGCGGAGCGTAAAGTCAAGGAGGAACAGGAAGAGGATGAAGATGAGGATgttcttaattaa
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEDASAVVGKLEVGNAVLANPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGVAGSSAVVESVATGEMGDDDAEAENTDEQDESESQLIEEEYVGSGDPLIEMTADADVDMHEDGMHEGEPGDEEEDDELLDVKPRKVHLDMNMIKAKARQRPMSAKVTKKTMTKQYQQHAALKKESKDDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAEQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDEDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00512829;
- 80% Identity
- iTF_00563278;