Dnik005853.1
Basic Information
- Insect
- Drosophila nikananu
- Gene Symbol
- -
- Assembly
- GCA_008042635.1
- Location
- VNJV01013407.1:6345-16366[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 2.7e-08 33.8 0.0 1 40 669 709 669 712 0.90 2 4 5.6e-14 1.5e-10 41.0 0.1 2 39 724 761 723 764 0.94 3 4 1.3e-17 3.5e-14 52.6 0.0 1 45 778 823 778 823 0.98 4 4 1.3e-19 3.6e-16 59.0 0.0 1 43 830 873 830 874 0.97
Sequence Information
- Coding Sequence
- ATGGTCGGCGGGAAAACAGGAAAAGCCGGCAAATGGGAAAGTGGGGTTgtgggcagcggcagcatccTGGGTTGCCCATTTGCCAACTGGGCTGGCCTCTTGCGCACCGCCGAACAGCTAAAGATCAAGGGCCTCTGCGAAACCGCCGAGAATGCAGACGACTTGAACGACGCGGCCACAGCAACGATCACAGTATCGGAGAACATTCAGCAGGCGGTTGTGGGAAACATTGTGAATGCCACCATAGTTCCTGGAGCTCCTTCGCCCTCCTtggaacagcagcaacagcaacaccaccaGTCTCAGGCCcaggaccagcagcagcaggttcatgcccagcaacagcagcagcagcaaatcaACGCCGGCTTGCTGACACAACAACACGGAGGAGTGCCCAGTGGAAGTAGTGGTGTTCCCCTATCCGGACAGTTGTTGAGCTCCGCGGCGAGCGGCACTAGCGGTAGCGGTAGCTCCGGTTCCGGCGGACAGCAGACTTCACTGACGCCATCCGGCCTACAGGCGACGCCACGCAAATCACGGCTAAAGCGATCCAAGTCACCGGATTTGCCAACAGGTTCCGGAAGCTCGGGTGGCTCAAGCAGCTCACAGTCACAGCAGCAACCGCAGCCGGCGCACCACCATCCCCACCAGACCATTCTCATCCAGGGCCAGAATCCCACCTCGATTGTTAGCCTGCAGCAGACGGCCGACGGCAACTATATACCGGTGGGAGCAGGAACTGGCGACGAGTCGGACACCGAGAACGATCACGAGCACGAGCACGAACACGAGCATATCCACGGACACGggcacggacacggacacccACACGGACACggccacagtcacagtcacgaCCGCGACGATCACGAGCTCGAGAATAAACCGAATAAGATCTGCAAGACGGAACATTCGGTGGCATCGCCGGCGTCCAATTCATCCAGCGCCAACTCAAACAATGCAGCGGGCGTGAGCGGCGGCGTGTCCACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAAGCGCTCGACATTGACAATCATTTGGCCCAGCAAATACATCGGCTCGATCAGTCCCCCATGCACTCGATATCCCATCACCACACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACctggcagctgctgcccaGCAGCATGCTCTCAAtcaggcccagcagcagcagcagcaacagcagcagcatgccCATCACcaagcccagcagcagcaccagcaacagcagcatcagcagcagcagcaacaacagcaacagcagcagcagcatctccaTGCCCAGCAGTTGCAGGcccagttgcagcagcaacagcagcaacaccaccagcagcaacagcaggcggcagcagcagcggcagcagcagcagctgctgcaggtgtGCATGGCCAACATGGGGGACACGTGACGCACGCCGATATTGGCGGGGCCACAGTCATGGAGATCGATCCGAGCCAAATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCAGGACATATGGACATGTACAATTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGTTCGCCACACGATCAGAAGGAGCCGCACTATACGAATTTGGACCAGCAGCACGGTCTGGGCGGCGGCAGCGTTTGTGGCCCGGGGCcaggtggtgctggtggtggtgggggcATGAGTGGTGGggctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGCTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCGTCGACGCTCTACAAGATTGCCCGACGGGAGGGCATCCGCCTTGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGCGCCGAGTTTGGCATACCAACAGgaacactTTATGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCTGTGCGTGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTTTACGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACAGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGTTGCACATGTTGCAGCAACAGTTCCCGTACAGCCCGTCGCCTCATCCGCAAACGCCGCAACATCACAGCACGCCGCAGCACCATAGCTCGGCGCAGGGGCCGCCGACGCCACAGcacatgcagcagcaacagcacgtGGTGCATATGCAACAGCAGTCGCCCCATCCGGGTCACCATCCGCAGCACATGCAGCAGGATGTGGTCACATCGAGTAGCCAAGTGGTGCacagccaacagcagcagcagcagcttcagcagaTCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MVGGKTGKAGKWESGVVGSGSILGCPFANWAGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQHHQSQAQDQQQQVHAQQQQQQQINAGLLTQQHGGVPSGSSGVPLSGQLLSSAASGTSGSGSSGSGGQQTSLTPSGLQATPRKSRLKRSKSPDLPTGSGSSGGSSSSQSQQQPQPAHHHPHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHEHEHEHEHIHGHGHGHGHPHGHGHSHSHDRDDHELENKPNKICKTEHSVASPASNSSSANSNNAAGVSGGVSTTGNQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAAQQHALNQAQQQQQQQQQHAHHQAQQQHQQQQHQQQQQQQQQQQQHLHAQQLQAQLQQQQQQHHQQQQQAAAAAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPQTPQHHSTPQHHSSAQGPPTPQHMQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00594628;
- 80% Identity
- -