Dnik008949.1
Basic Information
- Insect
- Drosophila nikananu
- Gene Symbol
- retn
- Assembly
- GCA_008042635.1
- Location
- VNJV01017673.1:1-12922[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-26 8.6e-23 81.0 0.0 2 89 275 360 274 360 0.96 2 2 2.8 8.4e+03 -2.3 1.0 12 13 524 525 494 564 0.54
Sequence Information
- Coding Sequence
- ATGCTACATTCACATGGTGATCGAACAGACGACGAAATGAGAGACTGCGACTCCGTGGATGGAGAGCATCATCAGCTGAGCGCCAAGGCGGCTATTGCAGCACGTCTAAGTCACACAGTTTCCGGCGGAGGAGGCAACTTTGCCAGTCCCGAGCCACAGACCGAGCTGCCCCTCAGccatcatcatcaactGCCGCCAAACCATCCGCTAAATGCCCTGGGCAGCTTCATGGGCATCGGTGGCCTACACAGCATTCCAAATCTGCAGCACAGCGATGTGCTCGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGACTGATGGAACAGGAttatgcagcagcagcccatGCAGCGGCCTTTGGGGCCAACATGCTGCCCACCACCATCAATTCGGGCTTTCCGCTGCCACACAATTCGgtggctgcagcagcggctgccgcCTCCTTTGGCCACATGACCTCGGCTCCAAGTGGCGGCAATAACTACAACGGTggtggcaccaccaccaccaccaacaccacAGCCAGCTCTAATAGTAATCCCAGCAGCAATGGtggtggagcagcagctgcaggtggaggaggagtggGTGGTACAGCCACAGGAGGCAACAGCGCTGGAGGACACCCCTTTTCATTCGCATCCCCAACAGCAGCGCCCAGCGGCAAAGAAGCCCGCCACTTTGCAGCCAATTCCGCATCCAACTCGTCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATCAACGATGACCCCAAACGCAAAGAATTCCTGGACGATTTGTTCTCATTTATGCAAAAGCGCGGCACCCCCATCAATCGGCTGCCGATCATGGCCAAGTCGGTGCTGGATCTGTACGAACTGTACAATCTGGTGATAGCCCGCGGCGGCCTGGTGGATGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCCGCCTTCACCCTGCGCACCCAATACATGAAGTATCTCTACCCGTACGAGTGCGAGAAGAAGAACCTCAGCACGCCGGCGGAGCTGCAGGCGGCCATCGATGGCAATCGGCGGGAGGGACGTCGCTCCAGCTACGGCCAGTACGAGGCCATGCACAATCAGATGCCACTGACACCCATTTCGCGACCCTCGCTGCCGGGTGGCATGCAACAAATGTCCCCTCTGGCTCTGGTCACCCATGCCGCGGTGGCCAACAATCAGCAGGCTCAggccgcagccgccgccgccgctgcccatCACCGCCTGATGGGAGCCCCGGCCTTTGGCCAGATGCCCAACCTGGTCAAGCAGGAGATCGAAAGCCGCATGATGGAATATTTGCAGTTGATTCAGGCCAAGAAGGAGCAGGCCATGCCGCCGGGCCTGGGGGCCAGCCTGCCccatcagcagcatcaacagcagcaggcgcaacagcagcagcaacaccagcagcagcagtcgcagttgcagcagcagcaacagcatcagcagcagcagcatcacctgcagcagcagcagcagcagcgtcagcGCTCCCAGAGTCCCGAACTGAGCAAGCACGAGGCGCTCAGCGCCCAGGTGGCTCTGTGGCACATGtatcacaacaacaacaacagtccGCCGGGCTCAGCACACACCTCCCCCCAGCAACGCGAAGCTCTGAACCTCTCCGACTCGCCGCCGAACATCACGAACATCAAAAGGGAACGCGAGCGGGAGCCGACGCCCGAGCCCGTGGAGCAGGACGACCTCTCCGCCGGCCCCCAGCCGCCGCCGGCCAAGCGCATGGGCAGCGGCCTCCTGCCACCCGGCTTCCCCGCCAATTTCTACCTGAATCCCCACAACATGGCCGccgtggcagcggcggcgggcttccaccatcagcagcagcagcagcagcaggacgccGCCTCCGAGGGCGAGCCGGAGGACGAGTACGGCCATGGGGGACACAACACAACGGGCAACTCGTCCTCGCTGCACGACGACAGCGAGACAGCGCAACCAATGAATGGACACCACCACAatcaccaccatcatcatcatcaccagaGCCATCAGCTGGACAAATCGGATGATTCGGCCATTGAGAACTCGCCCAGCAcatccaccaccaccgcctcgGTGGGTCATCGCCACAGCTCGCCGGTGTCCACCAAGAAGAAGGGCGGTGGCT
- Protein Sequence
- MLHSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVSGGGGNFASPEPQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTINSGFPLPHNSVAAAAAAASFGHMTSAPSGGNNYNGGGTTTTTNTTASSNSNPSSNGGGAAAAGGGGVGGTATGGNSAGGHPFSFASPTAAPSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQAMPPGLGASLPHQQHQQQQAQQQQQHQQQQSQLQQQQQHQQQQHHLQQQQQQRQRSQSPELSKHEALSAQVALWHMYHNNNNSPPGSAHTSPQQREALNLSDSPPNITNIKREREREPTPEPVEQDDLSAGPQPPPAKRMGSGLLPPGFPANFYLNPHNMAAVAAAAGFHHQQQQQQQDAASEGEPEDEYGHGGHNTTGNSSSLHDDSETAQPMNGHHHNHHHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKGGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00608965;
- 90% Identity
- iTF_00612597;
- 80% Identity
- -