Dnig001188.1
Basic Information
- Insect
- Drosophila nigromelanica
- Gene Symbol
- -
- Assembly
- GCA_004149445.1
- Location
- SCDR01000541.1:30299-37057[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 2.1 9.5 0.4 1 23 1291 1314 1291 1314 0.97 2 13 6.6 7.9e+02 1.4 0.2 1 23 1477 1499 1477 1499 0.91 3 13 0.00015 0.018 16.1 2.7 2 23 1502 1523 1502 1523 0.97 4 13 5.6e-05 0.0068 17.4 0.2 3 23 1531 1551 1529 1551 0.98 5 13 4.7e-07 5.6e-05 23.9 4.1 2 23 1558 1579 1557 1579 0.97 6 13 4.4 5.3e+02 1.9 0.4 5 23 1592 1610 1590 1610 0.96 7 13 1.1 1.3e+02 3.9 5.4 3 23 1617 1638 1615 1638 0.93 8 13 0.12 14 6.9 0.2 2 23 1649 1669 1648 1669 0.96 9 13 4.5e-05 0.0054 17.7 0.4 1 19 1675 1693 1675 1697 0.95 10 13 1.3e-05 0.0015 19.4 0.5 1 23 1705 1727 1705 1727 0.98 11 13 8.4e-05 0.01 16.8 7.6 1 23 1733 1755 1733 1756 0.96 12 13 0.00016 0.02 15.9 5.9 1 23 1761 1783 1761 1783 0.98 13 13 0.023 2.8 9.1 8.2 1 23 1789 1811 1789 1812 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACAGTGTACAGTGCCCCGTGTGCACCCTGTATCTGCATGCGGGCATGAATCTCTCCGATCACTTGGAGACACATCCCAAGGAGCAGGTGATCAAGGCGCTGGTGCAAATGACCATCGTTGGCAGCAATGGAATGGACAGCGCCCTGGCGGCAGCTGTGCTCTCTGGCAGCGCTGCAACATCAGATGcaggtgccgccgccgcatcatcatcatcaccaccaccaccatctaCGCCCGCTACTGTTGATGTGAAGCCAGTTGTGCCAGCAGCACCTCCACCACCACCtccaactacaacaacatccAAATCAGCAGCACCCAAAACTGCGTTGCtgcacagcggcagcagcagcagcagctgcaacaacaaattgagcaATCCACCGAATAAGGCAGTTAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCACCACATCCAATACACCCACCACAAGTAGCGTGGCCGCCGTTTACTCCGACTATCGCTATGAACAgcagccccagcagcagcagcagcatggcTTTGCACGTGGTGCCACCACGCTGGTCATACCACAGACAccacagcagcaccagcaccagttCCTGGCCAGCCAACAGCAGTCTGCCCACTTTGCCCAccatccgcagcagcagccggccaTGAAGTACACTTATGCAACAGCGCTGCctacgccgccgccgccactgcAGCTCTTTGCGCAGCAGGCGACGGCAACGCAGTCGCATCAGAAGCCACCACCCGCCTATGGCGCCGCCATCAGTCAAATTAGATCTCAgcacaaccaaaacaaacatcagcaacaacaacaacaacaacagcagcagcagcaacaacacataAACGTACAACAAAACATTAACCTAGCACCACCGAGtgacaaacacaacaaagtACATACGGAGATTTTTCTAAATCCACCGCCTCCACCACCGCCACAGCTCACGATTCCGTCAACGTCAGCCGCATCAAGACTGCAacatccacaacaacaacaacaacaatcgcttgcagcgggcagcagcaacagcagctatgTGGTAGCCACCTACGCCAGTTCCTGGTCGTCTCTGATGTCATCAAGCTCAGCCGGACGAGCCAGCAGCAGTCGCCAAACGACCAACTCGCCCTTTGGTGCCCTGCTAAATGCTGCGGCGCAAGCTGCCTGCGCCTCGCCCGCCTCCTCCGGCGCTGCGTCTGTGCTGCGATATGCCGAGTCGCCAGTGGCGCACTATCTGGAGCGGGAAAACGGCGACTTTATAGTCCAGGAGACGCCCAAGCACATTGTCGAGTGCGTGGAGAAGGACGACGGGGAGTTCTCTGTGATTGAACGCATCTACCAGTCGCCACCCAGCGTGCTGCATAtacacgacgacgacgaggacgacgaagaggaggaggacgaggaggagCCAGATAAAGGcTGGGCAAACAGCGAGGATGAGAATCACGTTAAGCTGGCACACGAGCATGTCGAGGATGGCGACGATGAGCAAGAGGATAGCCGCAGCAGAGTTGAACCCAAGACCACATCGAAAAAGTCACGGAAGTCAAAACCAAATGGCAGAAAGCACAAACGTGTTGCCAAACATCAGCCGGAGGATGAGGACGACTTTATGAGCATAGGCAGCAGCTGTGCCGAGAGCGATCATCAGCTGGAGGAGCAACAGCCGGCGCAGGCGCATGCGGCACCGGTTGCGTCCGCGTCGCCAGCTCAACTGTGCACTGCGCCTTCGACAAGcagtggagcagctgctgcagccgtgGCTGCTGTCGGTTCAAGCGTTGCCAGTGCGACAACCAGCGGCTCCATCAAGTCCAAGAAGAATCGTGTGACGGTGCTCAGCGATGTGCCACTGAACATGAACGAGTATCTGGATCTGGTGGGCAACATTGTGGCCTCCAGTCGCATTGGTGCGGTTCGTCCGTTTGCCGCCGTGGCGCCTATACCGTTGGTCAAGGTGGAAAAGGAGGAGCCGCTGGACGACTACGACACTGTGCGGAATGCAGAGATGCTGCCAATGGAGCACAAGCCCAGCGTGGAACAtgccagtggcagcagcaatagcagcagcagtggacaCGCCACCACCAGCGTCATTCGCatggccagcaccagcagcagcgcgaacGTGGCCACCGACGATCTCACACAGCCGCCGCCCATGAAGGTGGAGGTGGAGGCAACGGTGCTGATGCCGCAGCGCTTCTCAACGCCGGCGCAGCAGCGGGGCCCCAAGAAATTAGTCATCAAACCAAAGGCCacagcaacggcgacggcaacggcaacgacgaATAagactgacaacaacaacatcagcagcagcagcagcaactgcgcgGAAAGTCCCACCAGCATATCAAAGGTGTCCACGGAGCCGGTGCAGATCAAGAGCGAGAATGTGGAGACGACGACAAcgagtggcagcagcagcagcattctgGAGAAGCATCTGACCACCAGCTATGCGGCACAGCAGGCGCGCAAGCACTCGGCGGTCAACGATGACGATGCGCGCGTGCTGCTGGAGTTTGCTAATTCGAAGCAGCTGCCGTTGGCTGGCAACAGCAATCAGACCACGTTTGTGGTGAATGCGGCCAGTTTTGCGTCGGCGGGCTCTGTgttcgccagcagcagcggcggcgctcAGAAGTCGACTAAGCCGGGCGAAGAGTATATTCTGCCTGATGATAACAATCTGGAGGTGGATGAAATTGTGATATCGTCCTCGTCTTCCTATGCCTCCAactcgcagcagcaacagcactcgcagtcgcagcagcagcagcagccagcgcagCAGGTcttgcagcaggcgcagcagccgTCCGCCTTTACGGACTTTAATTTCCTGTACCATCCCAacgcgacaacagcaacagcagcagcaacaacggcggcagcaacaaccactGCCAATTTTGCTCCATTtggcatacagcagcagcaacaacagcagcagcagcaacagctgcaacatcCCCACCACGGCTCCAGCGAAGCTACCAATGCCGCCACGCTGGCGTCCTCCTCCAGCAACTCATCCGCATTGGACCAGGATTGCTCGATGAACGCCACGTTTCGCGTGGCcaagcaacaaacaacgcTGGGCTCCTGGTACCAggcacatcagcagcagccgcaggcaACCACCTCACACGGATCCGGTGTGGAGCAGTCGAGCAATTTCATCGCCGCACTCGCAGCCGTCGATTGCTGCAGCGTGGCGGGTGTTGACAGCGATGCCAAGTACTTGGATTTGGATGCCTGCAAGCGGGAACAGctcagcaatagcagcagccatttgCCCTCGGCCTGTGCGTCCACGTCCACAACATCCTCATCGTTTGCAGCTGCGCCCACGGAGAGCAGTCTGGTTGGTGGCCTGGGTCTGAACATACGCACCGACGAGAAGATGCCCGCCAAGGGTGAGATCTCCGAGCAGGAGAGCAACTGCGACATCGAGAACTCCTGGAGTCAATCGATGTACGGCGACATATCACAGCGTTACTTTAGAGGCCACTTCACGGATGGCTACAATCAGCAGCTGGCCGATTGGCGGCACGACTATTATCCGGCGCAGGATCTtagtggccagcagcagcatcagcactcACAGCGTGAGCAAAAGCGCTTTGATTTCAATGCGGTCGCCTCGGAATACGCGCAGCCAGGCGATCTGGACACCACCTCTAGCTCAACTAGAAACAATCATTTGCTGGATGCACAGCCCACCACTTCCACATCGTCGTCGGCTTTGCTGGCTGGTCCACCGATAGCCTCGACATCCCGTGCGGCCGCCGAGGCGGAGGCTGTGGCCGCGGCGCTGGCACAACGGAAGCCGCCGCGGCGCAAGATCTACAAGTGTCCGCACTGTGTGGCCATCTTTGAGAAGCTCAAGGAGCGCAACGCGCACATGATCAGCGAGCATAACTATGTGCGCCAGAATCGACGTCTCATCTGCACCCTGGCATCTCATCTGCCGCAGTCGCAGGCTCAACaggagccgcagcagcaacaacagcagcagcagcatctttTGCTGCAGGCGGGGCACAGCAATGATGATGTCTTGCACGAGGACTCAAAGGATGGCATTGTGAAGATCAAGCAGGAGCACTGTCAAGATAAACAGGATTCAACGGAGCAGCTGCTTGGCCACATGGAGTTGCCCGACGTCAAGGATTCGGGCCTGCTCGATGCCAGCGATGAGAACGGTCGCGATGCGGACATGAAGCCACCAACTAGCGTTACCGAGCTGGACGAGAAGCCCGCCATAGCGCCGTTGGCCATGACCACGCCCGCTGCCAAATTGGCCGCCCTCTATCGCATGCTAATTGCCTACAACGAGTCGAAGCTGGGCCAGGAGCGCAACAATCTCAGCGAACTGGAGCAGAAGGCCATGGAGAAATCCATATTCCTTTGCTATGTCTGCCGCACCGATTTCCCCTCCGTGAAACTGTACGATGCACATCTCACTGAGCATCCCGCCGAGTGTTTCACCTGCGGCAAGAAGTTCTACCGCTGGAAGAACTTCTCACTGCACCTGAAACGACATCTGGGCTGGAAGGAGTTCGGCTGCTACGTCTGCGACAAGAAGTTTGTGGTGCGCAGCGCACTCGTGGAGCACATGCGCATGCACACTGGCCAGACTCCGCTCAAATGCAAGATATGCGGCAAGAAGTTCAAGCGTTATTCCAATTTGACGCAGCACCGCAAGCGTCACACCAAGATGATGGTGCGTAAGAAGGAGTACGTGTGCCACTGCGGCGAGGTTCTGCCCTCGAAGGCGCGCTTCCTGTGGCACAAAGAGACGCACGACTTGAAGCCCAAGTGCTGTCCGTATTGCTGCGATCGTTTCGTGCATGCGAACTCGCTGCGCCGGCATATTCGACTGGCCCATTCGGACAAGTTCGACTATGCCGAGCCCATGGAGTGTCCCATGTGCAAGCAGATCTTTGCCAAGACATCGATCAAGGCGCACATGGCCACCCACTCGACGGATCCGCAATACGACTGCGCCATTTGCAACAAGAGCTTCTCCACCAAGTGGAATCTCAAAATACATTCGTGGGTGCACGCGAATCGCACGGCCAAACCGTTCAAGTGCGAGTACTGCCCGAAGGCGTTTGTACGCGAGTTGGACTTTAAGAACCACATGAATGCGCACAAACAAATCAAGCCCTACACCTGCGAGTACTGCGGCTGCAAGTTCATACGCAAGTACAACTATATGCGGCACCGGCGAGAACATCATGGCAACAAGAAGTTTACCTGCGATCAGTGCGACAAGTCCTTCCATCGCCACTACTATCTGATCGAGCACAGGCGCATCCATACCGGCGAACGGCCATTCCACTGCACCATCTGTGGCAAGAGCTCGACCACGAAGACCAATCACAACAAGCATCTGAAGATACATCATTCGCGCGATCCCTTCACTGTGGAGGTTTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGSNGMDSALAAAVLSGSAATSDAGAAAASSSSPPPPSTPATVDVKPVVPAAPPPPPPTTTTSKSAAPKTALLHSGSSSSSCNNKLSNPPNKAVKSAPPTTEAPATTSNTPTTSSVAAVYSDYRYEQQPQQQQQHGFARGATTLVIPQTPQQHQHQFLASQQQSAHFAHHPQQQPAMKYTYATALPTPPPPLQLFAQQATATQSHQKPPPAYGAAISQIRSQHNQNKHQQQQQQQQQQQQQHINVQQNINLAPPSDKHNKVHTEIFLNPPPPPPPQLTIPSTSAASRLQHPQQQQQQSLAAGSSNSSYVVATYASSWSSLMSSSSAGRASSSRQTTNSPFGALLNAAAQAACASPASSGAASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDEDDEEEEDEEEPDKGWANSEDENHVKLAHEHVEDGDDEQEDSRSRVEPKTTSKKSRKSKPNGRKHKRVAKHQPEDEDDFMSIGSSCAESDHQLEEQQPAQAHAAPVASASPAQLCTAPSTSSGAAAAAVAAVGSSVASATTSGSIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAVRPFAAVAPIPLVKVEKEEPLDDYDTVRNAEMLPMEHKPSVEHASGSSNSSSSGHATTSVIRMASTSSSANVATDDLTQPPPMKVEVEATVLMPQRFSTPAQQRGPKKLVIKPKATATATATATTNKTDNNNISSSSSNCAESPTSISKVSTEPVQIKSENVETTTTSGSSSSILEKHLTTSYAAQQARKHSAVNDDDARVLLEFANSKQLPLAGNSNQTTFVVNAASFASAGSVFASSSGGAQKSTKPGEEYILPDDNNLEVDEIVISSSSSYASNSQQQQHSQSQQQQQPAQQVLQQAQQPSAFTDFNFLYHPNATTATAAATTAAATTTANFAPFGIQQQQQQQQQQQLQHPHHGSSEATNAATLASSSSNSSALDQDCSMNATFRVAKQQTTLGSWYQAHQQQPQATTSHGSGVEQSSNFIAALAAVDCCSVAGVDSDAKYLDLDACKREQLSNSSSHLPSACASTSTTSSSFAAAPTESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRGHFTDGYNQQLADWRHDYYPAQDLSGQQQHQHSQREQKRFDFNAVASEYAQPGDLDTTSSSTRNNHLLDAQPTTSTSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMISEHNYVRQNRRLICTLASHLPQSQAQQEPQQQQQQQQHLLLQAGHSNDDVLHEDSKDGIVKIKQEHCQDKQDSTEQLLGHMELPDVKDSGLLDASDENGRDADMKPPTSVTELDEKPAIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516419;
- 90% Identity
- -
- 80% Identity
- -