Basic Information

Insect: Drosophila nigromelanica
Gene Symbol: -
Assembly: GCA_004149445.1
Location: SCDR01000126.1:102858-104468[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.6e-16 1.5e-12 47.5 0.0 2 45 367 410 366 410 0.95

2 3 0.045 1.5e+02 2.8 0.0 28 37 440 449 439 454 0.90

3 3 2.8e-19 9.3e-16 57.8 0.0 2 42 476 516 475 518 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.6e-16	1.5e-12	47.5	2	45	367	410	366	410	0.95
2	3	0.045	1.5e+02	2.8	28	37	440	449	439	454	0.90
3	3	2.8e-19	9.3e-16	57.8	2	42	476	516	475	518	0.96

Sequence Information

Coding Sequence: ATGGGCCACTCGTCCACAATTATGGATATACAGCGCGTTCTGCTGGACCAGCAGAGCAACAATCAGCAATGCGAGGTCTTACTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTCTTCGTGCTGAGCACTTGCAGCGATCTGATGCGCAATTTGCTGGTCGATTTGCCCGCCGGCCAGGAGGCAACTGTTATCCTGCCTGATATCCGGGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGTGAAACCAGCTTACCCTCTGCCCTGCTCACCGAGTTTTTGGAGGCCATCAATCTGTTGGGCATCAAGTCGGCCATTAGCTTCGAAACCAATCCCACAGCCGTGACCACCTCAAATGTTATCAGCGGCGCCATGGCTGTCGAGGCGGCCAAGTCAATAAGCGGCTTACACATCGCGAATACAGCTCTCATggaggaggaagaggaggaAGAAGAACCTGGCGCTGTGGTCGGTAAATTGGAAGTGGGAACTGCTGTGCTCGCCAATGCACAACACCAGCACCACGAGCATGATGGCCGAACGTTAGAATTCCTGGATATGTACGGTGATCAGCCCAAAATCACGTATTCCATTGAGCACATGGGCGGCACAACCAGTGGAAACCAATACATATTAACGGAGAACACGGGAACATATACCATCACCCAGTCTGCATCATCAGTGGCCAAGTTGGGTGTATCGGGGACCTCGGCTGTTGTGGAAGCTGTGGCCACCGGTGAGCTGGGGGACGAGGATGTGGAGGCTGATGTTACTGACGAGCACGACGAGTCCGAGTCTCAGTTGATCGAGGAGGAGTATGTTGCCTCCGCAGATCCTCTAATAGAAATGACCGCAGATGCGGATGGGGATGTTGATATGACCGAAGATGGAATGCACGAAGGCGATGCTGGGGAGGAAGAAGATGATGAGCTCCTCGATGTCAAGCCACACAAAGTTCAGCTAGATATGAAgatgttaaaaacaaagtcTCGCCAGCGTTCGCCTTCATCGAAGGTTACAAAAAGGACAATGACCAAACAACATATACAGCAGGCCGCACTCAAAAAGGAAATGAAGGACGATATCAATGACGCTCTTGATCTGGCCGCTGCGGCAGTGCTCCATGAAGGGATCAGTCTTCAAAAGGCCGCCGATCGTTTCGACATATCGAAAACCGTGCTATGGCGACGGGTACGCTCCAATCCAGCCTACATGCGAATAAAGCGGGAAAAGCCATCGCTATCGGAGGCATACGAGCGTTTGAAGAGCGGCGACTCGCTGAAGAGCATTAGCCAGGATCTGCACATACCCATGTCGACGTTGCACCGGCACAAAGTACGGCTGGCGGCACAAGGTCGTCTGCCCGATTTCGTTTCCTGCCGGCGGCGGGATAGCACCCCGAAAGACGAGCTGCGCGACAAGCTGGCCAAGGCGGTGCACGCTTGCATAAACGATGGCATGTCCCAAAACCATGCGGCAAATCTCTTCGAAATACCCAAGAGCACGCTCTGGCGGCACTTGCAACGCCGTGTTACCGAGGCGGAGCGTAAAGTGAAGGAGGAACAAGAGGAAGAAGAGGATGAAGATGTTCTCAACTAA
Protein Sequence: MGHSSTIMDIQRVLLDQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAVTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEEEPGAVVGKLEVGTAVLANAQHQHHEHDGRTLEFLDMYGDQPKITYSIEHMGGTTSGNQYILTENTGTYTITQSASSVAKLGVSGTSAVVEAVATGELGDEDVEADVTDEHDESESQLIEEEYVASADPLIEMTADADGDVDMTEDGMHEGDAGEEEDDELLDVKPHKVQLDMKMLKTKSRQRSPSSKVTKRTMTKQHIQQAALKKEMKDDINDALDLAAAAVLHEGISLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKSGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACINDGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEEDEDVLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549654;
90% Identity: iTF_00530367;
80% Identity: iTF_00561140;