Dnig004458.1
Basic Information
- Insect
- Drosophila nigricruria
- Gene Symbol
- sox21b
- Assembly
- GCA_037075265.1
- Location
- JBAMCI010000074.1:1507032-1521507[-]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.3 4e+03 -1.6 0.6 39 67 39 67 32 68 0.71 2 3 3.6e-30 3.3e-27 94.8 3.6 1 69 279 347 279 347 0.99 3 3 1.8 1.7e+03 -0.3 1.6 30 66 472 508 467 510 0.89
Sequence Information
- Coding Sequence
- ATGATGGAACGCTTATCCACGCACTTGTCGCTCTCTGGATTATCGCTCGCACATCCACTGCAGAGTCATTTGAGCTCGGTGAGCTCCAGCAGCGGCACGCATCTGGGCCAATTGATacagcatcatcagcaacaacagcagcagcaacagcaacagcagcaacagcaacagcagcaacaacattccAGTGAAcatagccacgcccacagtcaCGCCCACCACCACAGCCAGCAATTGTCGCTGGGTCAGCTGGGCCAGCAGCATCACCACCATCAgtgcaatagcaacagcagcggcggctCGCCCAACGGCAACGGATCCTCGGCTCTCAGTTTGCATCCGCATCTGCATCACtcggcggcagctgcagcggccGCTCATCACCTGAGCTCGCAGCACTCGCAactgcatcagcatcatcaagcagcggcagctacgGCCGCCGCGgcggcacagcagcagcaaccacattCCACAGCCTCGCATCATAGCCAGGCGGCCAGCTCCGGGGCGAGCTCCATACACAGCCAGTCGCAGACGCAATCGCACCAGCCCCACAGCAACGGCCTTGGCCAGCATCTGTCCGCGGGCACGGGTCACAGTCTGGGCAGCTCCAATTCGACTGCTCCGGTACATTACACGTCCACGTCCAGCACATCGAACAGCGTAAtggcagccgccgccgccgcccaccTGCATCACAATTCGCAGGCGTCGCCCATTAGCAACCTGCACCAGAATATGGGCAGTCTCAtgaacagcggcagcagcgccagCGATGTCTTCTTCAGCCTGATGATACAGAACACAACGAAACGCCAGAATGAGGAGCACATAAAACGTCCAATGAATGCTTTTATGGTCTGGTCACGCTTACAGCGTCGCAAAATAGCTCAGGATAATCCCAAAATGCACAATTCGGAGATATCCAAAAGGCTGGGTGCCGAATGGAAGCTGCTTACCGAGGAAGAGAAACGTCCGTTTATCGATGAAGCCAAGCGTTTGCGCGCTATGCACATGAAGGAGCACCCCGATTACAAGTATCGTCCCAGACGCAAGCCCAAAGCTCTGAGACGTGATGGTTATCCGTATCCCATGCCATACCCATCGGTGCCAGTGGAGGCGTTACGTGCAGGCATCTCGCCGGGTTACTTTGCTCCCGGTCCCACAGCGGCCGCCTATCACCTGGGCAGCCATCTCACGCAGACATCGCCGCCAACGACAACGCAGGCCACGCTCTCTGGACAGATGGACAAATTTGCAGCATTGGAACGCAGCTCGTATCTGAGtaatgcagcagctgctgcggcgggCAGTCAGGCGAGTGCTTACAGCGCCTATCTGGATCCCAGTGTGCTGACCAAGGCCTACTTCGACTCGAAAATGTATCAGGATCGTGCCAACTATGCCTTTGACATTTCCAAGATCTATGGCGCTCAACAGCACGCGGCGGCGcaccatcagcaacagcagcagcaacagcaacagcagcaacaacaacagcagcagcaacagcagcaccaactGCTCATGGCCAGCAGTGGTGCAGGCGGTGCaagtggtggtggtgctggcaGTGCTGGCGGCAGttcgcacaacaacaacagcagcagcgggttGGATGAGCGCGATGCCACGCCCCAGCTAGACGCGGGCGGACAAGTGGAAGCCAAGCCGCATCTACACTCGCCCAGCGATGTGGGCTTGGACTATGCCCATCAATATGCTCAGCAATATGGCGGTCAGTTggccagtgccgccgccgggGTAGgagtgggtgtgggtgtgggcgcCGGTGCGGCAgctggtggtggcggcggcgctgGAGGCGCCTCAGATTTTCGTCGACCGCTAACGGTCATCTTCTGA
- Protein Sequence
- MMERLSTHLSLSGLSLAHPLQSHLSSVSSSSGTHLGQLIQHHQQQQQQQQQQQQQQQQQQHSSEHSHAHSHAHHHSQQLSLGQLGQQHHHHQCNSNSSGGSPNGNGSSALSLHPHLHHSAAAAAAAHHLSSQHSQLHQHHQAAAATAAAAAQQQQPHSTASHHSQAASSGASSIHSQSQTQSHQPHSNGLGQHLSAGTGHSLGSSNSTAPVHYTSTSSTSNSVMAAAAAAHLHHNSQASPISNLHQNMGSLMNSGSSASDVFFSLMIQNTTKRQNEEHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKALRRDGYPYPMPYPSVPVEALRAGISPGYFAPGPTAAAYHLGSHLTQTSPPTTTQATLSGQMDKFAALERSSYLSNAAAAAAGSQASAYSAYLDPSVLTKAYFDSKMYQDRANYAFDISKIYGAQQHAAAHHQQQQQQQQQQQQQQQQQQQHQLLMASSGAGGASGGGAGSAGGSSHNNNSSSGLDERDATPQLDAGGQVEAKPHLHSPSDVGLDYAHQYAQQYGGQLASAAAGVGVGVGVGAGAAAGGGGGAGGASDFRRPLTVIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00573281; iTF_00598113; iTF_01321153; iTF_01327128; iTF_01321881; iTF_00562434; iTF_00530915; iTF_00585157; iTF_00472327; iTF_00506823; iTF_00560999; iTF_00522920; iTF_00512681; iTF_00519881; iTF_00554345; iTF_00585929; iTF_00568938; iTF_00476587; iTF_01327851; iTF_00495820; iTF_00582220; iTF_00470829; iTF_00513421; iTF_00542401; iTF_00577026; iTF_00518403; iTF_00564613; iTF_00595909; iTF_00501766; iTF_00582921; iTF_00576306; iTF_00570358; iTF_00607031; iTF_00609847; iTF_00516954; iTF_00485822; iTF_00616160; iTF_00525089; iTF_00558625; iTF_00521315; iTF_00495076; iTF_00511237; iTF_00593064; iTF_00528010; iTF_00496561; iTF_00597324; iTF_00557170; iTF_00498114; iTF_00498835; iTF_00560225; iTF_00566755; iTF_00497349; iTF_00535273; iTF_00552267; iTF_00500271; iTF_00482196; iTF_00522134; iTF_00543705; iTF_00499548; iTF_00574013; iTF_00619805; iTF_00548767; iTF_00532334; iTF_00537473; iTF_00538190; iTF_00545200; iTF_00572560; iTF_01320432; iTF_00519121; iTF_00479443; iTF_00568216; iTF_00509779; iTF_00557875; iTF_00610611; iTF_00493606; iTF_00589510; iTF_00509066; iTF_00520594; iTF_00608404; iTF_01326356; iTF_00490741; iTF_00601749; iTF_00533762; iTF_00546614; iTF_00901462; iTF_00575543; iTF_00583640; iTF_00595210; iTF_01325625; iTF_00541722; iTF_00567498; iTF_00551548; iTF_00516221; iTF_00528765; iTF_00508286; iTF_00473023; iTF_00616863; iTF_00563137; iTF_00526539; iTF_00506072;
- 90% Identity
- iTF_00598113;
- 80% Identity
- -