Dnig013460.2
Basic Information
- Insect
- Drosophila nigricruria
- Gene Symbol
- -
- Assembly
- GCA_037075265.1
- Location
- JBAMCI010000179.1:1964491-1970844[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-09 1.5e-05 24.7 0.0 17 40 621 645 616 648 0.85 2 4 6.6e-14 1.2e-10 41.1 0.1 2 39 660 697 659 700 0.94 3 4 1.5e-17 2.7e-14 52.7 0.0 1 45 714 759 714 759 0.98 4 4 1.6e-19 2.8e-16 59.1 0.0 1 43 766 809 766 810 0.97
Sequence Information
- Coding Sequence
- ATGGGCGTGGCTAGTTTTAGGCGACACTTTGAGGCGCAGTCAAATGTTGTCGGCATTATTCCAGCAATGGGCTTGGGATTGTATGGTCTGTTGCGCACCGCGGAGCAATTGAAAATCAAAGGACTGTGCGAGCCGGCCGAGAATGCGGACGATCTGAATGACGCTGCATCGGCGATAATCACTGTATCGGAGAACATACAGCAGGCGGTCGTTGGCAATATTGTGAATGCGAGTCTGGTGTCTGGTGCTCCGTCGCCCACactcgagcagcagcagcagcatcatcagcagcaacaacagcagcagcaacagcaacagcagcaacaggagcatcagcagcaggtgcaacagcagcagcaattggtGAACAGTGCGCTGCTGGCACAGCATACGCTTGCAACAAGCAGTGGCATACAGTTGGCGGCAGGGCAACAGCTGTTGAGCAATAcaggcggcaacagcagcagcagcagcagcagcttgcaacagttgcagcagcagcagcaacaacagcagcagcaacagttgcagccaACGCCGCGTAAATCGCGACTGCGTAAACGCTCCAAATCGCCAGATTTGCAACTGCAAACACAgtcgcaacagcagcagcaacaacagcagcaacagcaacagcagcaacaacatcatcatcatccacAAACGATACTCATCCAGGGACAGAATCAAACATCGATCGTGAGTCTGCAGCAAACGGCCGACGGCAATTATATACCAGTTGCAACAACTGGCGACGACTCCGATTGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGTGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAatCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATGCCACCGGAGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAGAGCGAGGTAATCGAGGCCAAGCATCTGGCTCATGTGcaggcgcagcagcaacagcagcagcagcagcaacagcaacaacagcagcaacaacaacaacagcaacagcagcagcagcaacaacaacagcaacacgcagcacatcatcatcagcatttgCACGCTCAGCAATTGTTGGCGCAaagtcagcaacagcaacagcagcagcagcaacagcaacaacagcagcaacagcaacaacaacagcaacatcaacagcagcaacagcaggcggCGGTGCATGCAGCACAGCATGCAGCGCATGCCACGCATACGGATATTGGTGGTGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGTGTTTGCGGCCCCGGCGCcggtggtgttggtggtggtggtggtggtggcggcattggtggtggtggtgttaaTGCTGGCGAGAAAGATGCATTAAAGACCCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGACGCTTTACAGAATGCCTTGGAGGCGCTGCGTTCGGGTCAAATATCGGCTAATAAAGCATCCAAAGCGTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACGCCGGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCTGGCAATACGTCTGTACAGAAAGCAAGTGCCGAATTCGGTATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCTATGAACGAGGCATTGAACTCGGTGCGCGTCGGTCAGATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAACACAAGTGGCATCTCCCTTAACAACACATCCGGCAATACAACCGGCAGCATTGAGATTATCGAACATAGTCAGGAGAATTCGTTGCATATGTTGCAGCATCAGTTCCCGTACAGTCCGTCGCCGCATGCGCAGACGCCGCAGCATCATGGAACGCCGCAACATCACGGCACGCCGCTGCATCACAGTACGCCGCATCACAGTTCGCAACAGGGACCGCCGACGCCGCAGGGCATGCAACAGCATGTGGTGCACATGCAACAGTCGCCGCATCAGGcccatcatcagcagcagcacatgCAACAGGATGTTGTCACATCGAGCAGCCAGGTGGTgcacagccaacagcagcagcagcagcaacagcagcagcagcaacaacaacagcagcagcagcagttgcagcagatCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MGVASFRRHFEAQSNVVGIIPAMGLGLYGLLRTAEQLKIKGLCEPAENADDLNDAASAIITVSENIQQAVVGNIVNASLVSGAPSPTLEQQQQHHQQQQQQQQQQQQQQEHQQQVQQQQQLVNSALLAQHTLATSSGIQLAAGQQLLSNTGGNSSSSSSSLQQLQQQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLQTQSQQQQQQQQQQQQQQQHHHHPQTILIQGQNQTSIVSLQQTADGNYIPVATTGDDSDCDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAAHHHQHLHAQQLLAQSQQQQQQQQQQQQQQQQQQQQQHQQQQQQAAVHAAQHAAHATHTDIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGGGGIGGGGVNAGEKDALKTQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISLNNTSGNTTGSIEIIEHSQENSLHMLQHQFPYSPSPHAQTPQHHGTPQHHGTPLHHSTPHHSSQQGPPTPQGMQQHVVHMQQSPHQAHHQQQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00512640;
- 90% Identity
- iTF_00479563;
- 80% Identity
- -