Dnig008155.1
Basic Information
- Insect
- Drosophila nigricruria
- Gene Symbol
- retn
- Assembly
- GCA_037075265.1
- Location
- JBAMCI010000131.1:3546755-3556498[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-26 6e-23 81.2 0.0 2 89 20 105 19 105 0.96 2 3 0.69 1.5e+03 -0.2 0.2 8 47 251 297 240 309 0.63 3 3 5.7 1.2e+04 -3.2 0.1 57 80 370 393 367 396 0.70
Sequence Information
- Coding Sequence
- ATGCTCATCTCCGAGGATCAAATACAGGAgCTCTATGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATGATTTGTTTTCGTTTATGCAAAAGCGCGGCACTCCCATCAATCGGCTGCCCATTATGGCCAAATCTGTGCTGGATCTGTATGAACTGTATAATCTGGTGATAGCACGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATTTGCCATCGAGCATCACCAGTGCCGCCTTCACGCTGCGCACACAATACATGAAGTATTTGTACCCATACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCCGAGCTCCAAGCGGCCATCGATGGCAATCGGCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCGATGCACAATCAGATGCCGCTGACACCCATTTCGCGTCCACCGCTTCCCGGTGGCATGCAACAGATGTCACCTTTGGCTCTGGTCACACACGCCGCGGCGGCCAACAATCAGCAGGcgcaggcagcggcagcagccgccgcagcgcACCGCCGACTGATGGGCGGACCGGCGTTTGGCCAGATGCCCAATCTGGTGACGCAGGAGATCGAGAATCGCATGATGGAGTATCTGCAGCTAATACAGGCCAAGAAGGAGCAGAGCGCTGGCCCTGTGCTGGCTGCCACACACaatcaccagcagcagcagcagcagcaacatcaacagcagcagcaacagtcgctgcatcatcaccagcagcagcagcagcagcagcgacagcgctCTCAGAGCCCAGAGCTGAGCACGCGCGATGCGCTGAGTGCACAGGTGGCGCTGTGGCATATGTATCACAATAGCAGTCCGAACGGTTCGGCGCATACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCCGATTCGCCGCCAACTCTGAATCTGAatcacataaaacgtgaacgCGAACGCGATCCGACGCCGGAGCCAACGGATCAGGATGAGACACCGCACCAGCCGCCGCCAGCGAAACGCGTGGGCAGCGGTCTGATGCCACCCGGTTTTCCCGCTAACTTCTATTTGAACCCACACAACATGGCCgctgtggcagctgccgcCGGCTTCCATCACCACCAggcgaacagcaacagccatcATCATctgcaacagcatcagcagcagcagcaacaggatgCCGCCTCTGATGGCGAGCCAGAGGATGACTATGGCAATGCTGAGCACAATACCACCGGCAATTCCTCGTCCATGCACGACGACAGCGAGCCGCAGCAGCTGAACGGCCATCACGAGCACGACCATCATGATCATCACCAccatcatcttcatcatcatcagaaTCATCTGGATAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCACTTCCACTACGGCGTCCGCATCGGGCGGACATCGTCACAGCTCGCCGGTCTCCACCAAGAAGAAGAGCGCAGCGAGCAAGGCACAGTCCAGTCCCAAGGACACGCAGCACGACAACTGCACAGCCAGCGGCAGCACAGCCATGGGCAGCGGCGGGGGAACTGGCAGTGGCGTCAAGCTGAATCCCCTCGAGACACTCAGCCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGCGCAAATGGCGAGCAGCAGTTGATTGTCAATCTGGAGCTGAATGGCATTAAGTACTCGGGCGTGCTGGTGGCCAATACGGGCGGGCCAGAGCGTCATGACAACCCGGACCCAGACACCGATGCAGTTGCTGCACCCGCTGCCGCCACGGAGGCAGAAGCCGAGGGAGAGTCAGCGCCAGAGGAGGTTAAGGAGGAGAGCAGCCAGGAAGTTAACCAGCATGAGGCAAATGAGGAGgagatgcagcagcaacaacagcagcagccaactgAAGACATTGTCAATGGGGGCGTGGGCGTGGACGTGGGCGTAGGCGTGGCTAtaggtgtgggtgtgggtgtggggtCGCTGTTAAAAGATGCTGTAGCCAGTTCGTAA
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAGPVLAATHNHQQQQQQQHQQQQQQSLHHHQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPNGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDQDETPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHHQANSNSHHHLQQHQQQQQQDAASDGEPEDDYGNAEHNTTGNSSSMHDDSEPQQLNGHHEHDHHDHHHHHLHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKSAASKAQSSPKDTQHDNCTASGSTAMGSGGGTGSGVKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVANTGGPERHDNPDPDTDAVAAPAAATEAEAEGESAPEEVKEESSQEVNQHEANEEEMQQQQQQQPTEDIVNGGVGVDVGVGVAIGVGVGVGSLLKDAVASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00512501;
- 90% Identity
- iTF_00476403;
- 80% Identity
- -