Dneu003964.1
Basic Information
- Insect
- Drosophila neutralis
- Gene Symbol
- -
- Assembly
- GCA_035044385.1
- Location
- JAWNME010000165.1:8251723-8252450[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9 5.7e+03 -2.3 0.4 58 65 13 20 6 25 0.60 2 2 1.1e-12 1.1e-09 38.4 10.2 6 70 143 207 139 207 0.96
Sequence Information
- Coding Sequence
- ATGTCAACAACACAACCAACCGATGTGCAGTATTTGCGTTGCCTCAAATGCCTCAAGATAGTCAAATGCTCGCGCTATGATACCAGTAGTCTAGTGCGTCACGTGCAAAAGGATCATCCGGAGATGCTTGACGATACTAACGATAAGGTGGCCAAGCTACACAAGTTGGCCGCCGACCATGGTTTAAGCCAGGAGCGCGTCTCGGAGATTAGCAAAATGACAGGGTTAACAGAGGAGGAAATGGCCGACAAAGCTGAGCGCTATATGGAGCGCaaacagcgcagcagcagccacaatggCGATGACgaggaaaacaaatttgagaAGTCGAAATCGAAAAAGCCGGAGGAAGCTGACTCGCTAGAGAAAAACCGACGCCAATACTATCGCTGCTCCATTGAACGCTGGGTTCCCATCGAGGGCTGCATTTATTGTCCCAACTGTGGCCGCAAGCGCCGACCACTGATCATGACTAGCTCTGAGTTCTATGCGAGCACCGACTGCTCCTCTTGCTGTGTGTCCAGTTTCTGgccattttgctttttgccttGCTTCAGCACTGGCGACAATCGTGAGTATCTGCACTGCTCCAATTGCAAGACTTTCCTGGCCATTTACGATCGCGAGAGGAATTGCATACGCCCCAACAGCAAATTTGTGGGCAATTAG
- Protein Sequence
- MSTTQPTDVQYLRCLKCLKIVKCSRYDTSSLVRHVQKDHPEMLDDTNDKVAKLHKLAADHGLSQERVSEISKMTGLTEEEMADKAERYMERKQRSSSHNGDDEENKFEKSKSKKPEEADSLEKNRRQYYRCSIERWVPIEGCIYCPNCGRKRRPLIMTSSEFYASTDCSSCCVSSFWPFCFLPCFSTGDNREYLHCSNCKTFLAIYDRERNCIRPNSKFVGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00497057;
- 90% Identity
- iTF_00576740; iTF_00607492; iTF_00577445; iTF_00514567; iTF_00522631; iTF_00499976; iTF_00517384; iTF_00557576; iTF_00616584; iTF_00620264; iTF_00486250; iTF_00549228; iTF_00596332; iTF_00567213; iTF_00610318; iTF_00542831; iTF_00495536; iTF_00498544; iTF_00502195; iTF_00518835; iTF_00574484; iTF_00593525; iTF_00583352; iTF_00599258; iTF_00565053; iTF_00497822; iTF_00525566; iTF_00513855; iTF_00553439; iTF_00570783; iTF_00597831; iTF_00497057; iTF_00521833; iTF_00560715; iTF_00528468;
- 80% Identity
- -