Dneo001927.1
Basic Information
- Insect
- Drosophila neotestacea
- Gene Symbol
- -
- Assembly
- GCA_035044365.1
- Location
- JAWNMD010000052.1:3132253-3146914[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.53 40 5.1 2.6 3 23 282 304 280 304 0.92 2 12 5.1 3.9e+02 2.0 1.7 3 21 460 478 458 482 0.90 3 12 0.0055 0.42 11.3 0.5 2 23 504 526 503 526 0.95 4 12 0.23 17 6.3 3.2 1 23 543 566 543 567 0.95 5 12 0.065 5 8.0 0.2 1 21 571 591 571 595 0.91 6 12 0.011 0.82 10.4 0.3 2 23 649 671 649 671 0.96 7 12 0.44 34 5.3 0.1 1 21 676 696 676 697 0.92 8 12 2.5 1.9e+02 3.0 0.5 2 20 721 739 720 742 0.88 9 12 0.00018 0.014 16.0 2.8 2 23 755 775 754 775 0.97 10 12 4.2e-06 0.00032 21.1 2.3 1 23 781 804 781 804 0.97 11 12 0.00022 0.017 15.8 0.6 1 23 842 864 842 864 0.96 12 12 6.4 4.9e+02 1.7 2.1 1 23 871 895 871 895 0.94
Sequence Information
- Coding Sequence
- ATGCATAACGAATCGGATGACTTGGAGGACACACATCTGTGCATCAAGTGCAATGCAACAATTGTGGGTTTGGAGAAGTACATTGAACATCGTAAAAGAAGTTGCTTAAACATTGCCAACAATCCGACGCAGCAGGAAAAGCAGGTGGTGACCACAACATCAACGGGAGCAACGGATCATAGCTATGATGGCTTTCACTTTACGGAACCAGAGGCACCTAGTAGCTATTTACGAAAGACAACAGCCAGTCATGGAGGAAAGACATCCAAGTCTCTGACGGAGGCCTATGATCCAACCTATGAACTGGGTGCCGATGTGTTTTTCTCCTCGTTGCAACTGCAAAGTGTCTCGACGGGAGGCAAGACAAGTGCACGTCCTGAACGGACCAAGGAGGACTCCAATTGGCATGGCAGTACCAACTGCACTGATCCTTTATTGAAAGCGGTGCGGGAACAGGAAGAATCTGATTTTAAGCCGCTTAAATTTGTGCATTCACCAGAGGCTAgtgaggaggaggaagaggatgATGAACCAGATgattttgatgatgatgatcaggATCATGATGATCATGCTGATGAGGATTACGACCCACGTCGTCACTCGCCACCAGCTGtgcctgccacacacacaggtGGCAAATGGAAACCCGAACATCGTCCACAGTTGCGTCACACGCACCTTGAACGCATCTCTCCCAGCTGGGATGATCCGCCCGAGGAGTCACATGATCATCCGCCAGCAGAGCACACTCATGGCAAATGGGTACCAGGCAGCAAACAGTTGGAATATCGGGAAAACATAGACTTGACCAAGTTGCAACAACCGGGTGCAAGTTATTGGTGCAACATCTGTTGTCGTCGCCTCAAAACGCGTACTAATTACGAGCAACATCTACGCAGTGCTTATCACCAAAAGAGGGCAGATGCAGAGCGTGAATTGGAACAGGGAAACCTCGAAGGAGCTAACTTAACGCTTGCCAAAGATTTTAAGACAGTGGCACAAGCAGAGCACAATGTTCAGCATGAGGAACACAGTGAGCACCGAGAGCACTTGGAACAATTGCAacctcgtcgtcgtcgtcgtcgagCCAATCTTCTTCGATGTGAACTCTGTCGTCACAGCATGGCAAGGCATCTAATTGGAAAGCATCTCATTTCCCACTTTCACTATAGACGCctccaacagcaacaaacgcAACTTCATCGCCAGAATTCTCTTCATGCCATCCTCGAGCACATGGGCAGCATTGTGAGGCAAGCACCTTTTCAGTGTCTTCCCTGTCGGTTCTATGCCAACACCGAGCAGACTTTTCAGGTCCATTGGCGCTCTTCCTCGCATGTTGAGCTTACCGAGCGTTTAGGCGGTGATTTCTGGTGCAGCTATTGTCAGTTCGAATGTGGCAGCAACGAGGAAATGTGGCAACAtctgttgcatgccacacacaagGAAGTGCTCCTGGCACTGAATCGATCCGTGCCCGTTTGTATTGCACAACGCCGTCCCATCCAATGCGAGGTGTGCAACGAGAGTTTCCTCTACAATTTCCAGTTGCGTCGTCACTTTGCCACAGAACATTCAGGATTGGTTGCCACAGGCAGCGCATCGGATGCATATCAATGTCGGTTTCGTTGCAACACTTGTGGCGCCGCACAAAGATCACGTGTGGCATTGCAACGACACGAGAAGCACAAACATCACCTGGCAAGGTATTATTGTGCTCTTTGCAATCTGGAGTTTGAGACGCCTCAAGAGGCACGTCGACATCGGAGCCTCGTGCAACATGCAAGACGACAAACCAAACGGAAGTTTGATCCACAGCCGGAGCAGGACATTGAGCATATGCTGCGTGAGGTGCTGGACGATCAGGAGGAGGTGCGGGAGCAATCGGATCAGCCGGAAAAAGAGACATCTTTAACTGCCAAAAGGCGTTGCTTGGGAAGACAATGCACCAGTTGCAACCTGAACTTTGAGACGCCTCAGGCACTGGTCGAGCATCGCCGGGAATCGCATCCTGTGGACAATCATGCCTGTCTCAGTTGTGGTGGAAGCTTTCAGTCCGCTCAGGCACTTGGAAGACATACACGCAGTTGTCAACCCATCGCCTCTACATCCAACACTATTTCCAATTCCATTTCTGACTTGCACTCCAAATCCTGGCGCTGTGACCTGTGCGACTTTAGCTCTCAATACGAATCGGATTTGTTATATCATGGCTTCTTTCATTCCCGTGATTCCTCGATTGGTAAAAACGAGCTCCTTCAATGTCCACGCTGTCCCAAACAGTTCCGCAAACATTCCCTTCGTGCTCATCTGAGAAATCATACGGATGAACGCATCTTTGAGTGCAAAGAATGTCAGGCCAAGTTTGCCAGGCGGCACAATCTCAAAAATCATATGGCTACtatgcatgcaacaacagcaacaacaaaaacaactgctgcaacaacaactacaggatcaactacaaaaacaactgaGAATTCAACGTCTGAGAAACCAAAGGATAATCCCCGCAAGAAATTTCAATGCGGCATATGCGGTAAAATTCTGACTAAAAAATTCTCCTTGAAACAACATGAACTTCTTCACACTGAGGTGGAACGTCGCTTTCGATGTCATCTTGAGAACTGTCACTATGCAGGACTCACTACGGAAGCTCTCAAGACCCACCTGCTATCCCATGCCGAGGGCAGTTACAAGTGTTCACATGAGAACTGCAGTTATGTGGGCAAAAGTGAGCAACACTTGAAGAGGTGGTGTAAATTCTAA
- Protein Sequence
- MHNESDDLEDTHLCIKCNATIVGLEKYIEHRKRSCLNIANNPTQQEKQVVTTTSTGATDHSYDGFHFTEPEAPSSYLRKTTASHGGKTSKSLTEAYDPTYELGADVFFSSLQLQSVSTGGKTSARPERTKEDSNWHGSTNCTDPLLKAVREQEESDFKPLKFVHSPEASEEEEEDDEPDDFDDDDQDHDDHADEDYDPRRHSPPAVPATHTGGKWKPEHRPQLRHTHLERISPSWDDPPEESHDHPPAEHTHGKWVPGSKQLEYRENIDLTKLQQPGASYWCNICCRRLKTRTNYEQHLRSAYHQKRADAERELEQGNLEGANLTLAKDFKTVAQAEHNVQHEEHSEHREHLEQLQPRRRRRRANLLRCELCRHSMARHLIGKHLISHFHYRRLQQQQTQLHRQNSLHAILEHMGSIVRQAPFQCLPCRFYANTEQTFQVHWRSSSHVELTERLGGDFWCSYCQFECGSNEEMWQHLLHATHKEVLLALNRSVPVCIAQRRPIQCEVCNESFLYNFQLRRHFATEHSGLVATGSASDAYQCRFRCNTCGAAQRSRVALQRHEKHKHHLARYYCALCNLEFETPQEARRHRSLVQHARRQTKRKFDPQPEQDIEHMLREVLDDQEEVREQSDQPEKETSLTAKRRCLGRQCTSCNLNFETPQALVEHRRESHPVDNHACLSCGGSFQSAQALGRHTRSCQPIASTSNTISNSISDLHSKSWRCDLCDFSSQYESDLLYHGFFHSRDSSIGKNELLQCPRCPKQFRKHSLRAHLRNHTDERIFECKECQAKFARRHNLKNHMATMHATTATTKTTAATTTTGSTTKTTENSTSEKPKDNPRKKFQCGICGKILTKKFSLKQHELLHTEVERRFRCHLENCHYAGLTTEALKTHLLSHAEGSYKCSHENCSYVGKSEQHLKRWCKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00510899;
- 90% Identity
- iTF_00608801;
- 80% Identity
- -