Dneo005887.1
Basic Information
- Insect
- Drosophila neotestacea
- Gene Symbol
- -
- Assembly
- GCA_035044365.1
- Location
- JAWNMD010000155.1:953353-955392[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00024 0.55 10.1 0.0 29 48 473 492 447 510 0.82 2 3 0.15 3.5e+02 1.1 0.0 30 46 528 544 522 557 0.83 3 3 8.7e-05 0.2 11.5 0.0 22 57 566 604 554 616 0.77
Sequence Information
- Coding Sequence
- atgtCCTGGCCTGGCAAATTGGCTGTTGCACATCAAAATTTTTGTGGCAGCAAGCCCGGACCAACTACGCCCGCTGCTAGAGGAGTCAGTACCTGCACAAACGCCTGTGagtgcaaatgcaaatgttgccgAGGCTCAGTTCAGAAGTTTGTAAACTTCGATGCAGCAGCATCAAAAACTGGTGGACCAGTGCAGAAAATGGCGCTTCTCAGTACCAGAAACTTGTTCTTGCTACTGAGTACAGCCCAATCCCGAGAAAACTTCTGGAGTAACCAGTATTATAAAGTGGATTTACGTTCGGATTTTGAAGCACTTGCTGCAGCGTTTAGCGTAGAGGAAAAGACAATAAACTATGCACAGTTGGAGCAGATAATGAATACTATAACGTCAGGCTATCGTCGTGCCTTTATCAAATTAAGCATGACTGAAGCACATGGTGCTTTGAGACCCAAGTCAGTTGCTCAGAGCTTTAAAGGATTACGCTGTAGCTGCACAGACTGCACCATGTTGCCCTGGAAAAAACTAGAGCAACTGGAGACGCATCAATGGGTGCACACGCCCAGTGACAACTGGCACTGTTCGTTATGCTATCGACGTTACTTTATACAGCACACGTTGCTCTCACACCTGAGCAGGCGTACAAAAAGGGATGTAGCCGGAGAGTTCCTGGAAAATGTTACCTATAAACAGCTAATGGagacacagcaacaacaggagctGCAGAAAGGGTCTACCCAAGTGGAGCAACTGAATGTGCGACTGTCCAAGCGTCATCACTTGGATTATGTAGCGGAAATTGAATCGAGAGTGCAACCTACTTCTCGTAAACGCTGCTCTCTCAGTAAATGTGTATACTGTGATCACATTTATCGATACAGCTTTAGCCATCAACTGCATATGAGGCAAAGCCATTCTCCGATGCATTACAGTCCTCGCTGGCAATGCTACAGTTGTTCCCGCAGCTTCCGCACACGACGAACCTATGTTCAGCATCTGCAGAGAGTACGTCAAGCATGTCATCAACGTCTTCGTAGATTTAAATGCTCCAGCTGCAAGAGGCGCTTTCAGTTGGAGAGATCGTTAATACAGCATGTAGCCATAGCCCATTCACGCAGTTTTCGTTGCCTTATATGCAATTTACCAAGCCATGGTCGTTGCTGTGATGCACACAGTGCCGAGGAGTGTCGAGCCGCTATTCGAAAGCGTCGCCAAGAGCAAGGTCGTAAACCTCGACCACCACGTAGCTCCTCATCAAAGGTAGTATGTAATTTCTGCCAAAAGAAATATTCCACTCCCTTTCTACTTAATATACACATGAAGAGGGTTCACTTGAAACAGGCAGACTTTATCTGTGATCAGTGTGCCAAGGCTTTCTACAGCAATGCGGGTGTTCAGGAGCATATCAAGAGGGTGCATCTGAAGACGGAGACAGTTTATTGTGAACCCTGTGGCCTGACAATCGCAGAACGTAAAAACTACTTACGCCATTGTGATAGCATTCGTCATGTGGAGCAGCTAAGAAAGTTGGCCAAGATCAAAGGCGAGTTACCACCCGATGCGGTGGTCGAGAAACATGTGCCAAAGGGTCCTATAATCTATTGCGAACCCTGCGATCGTCATATCAAGGATTATGTCAATTTTAGGAGCCATTGCAAAACCCAGAAACATGAAAGAAAGTTGGCGGAACAGCAGATGAGAAAAGACTCGAAAAGTGAACCAGTGCATCTGAAGACGGAGTCAGTATATTGTGAACCCTGTGGCCAGACAATCACAAATCGTAAAAATTACTCGCGCCATTGTGATAGCACTCGTCATGTGGAGCAGCTAACAAAGTTGGCCAAGATCCAAGGCGAGATACCACACGATGCGGTGGTCGAGAAACATGTTCGAAAGGGTCCTCTTATCTATTGCGAGGTCTGCGATTGTCATATTAAGGAATATGTCAATTTTAGAAGCCATTGCGAAAGCAAGAAACATAAAAGGCAGCTGGCGGAATTCGAGAAGAATTTAGACTCGATTATTGAATTAGATATTAATTAG
- Protein Sequence
- MSWPGKLAVAHQNFCGSKPGPTTPAARGVSTCTNACECKCKCCRGSVQKFVNFDAAASKTGGPVQKMALLSTRNLFLLLSTAQSRENFWSNQYYKVDLRSDFEALAAAFSVEEKTINYAQLEQIMNTITSGYRRAFIKLSMTEAHGALRPKSVAQSFKGLRCSCTDCTMLPWKKLEQLETHQWVHTPSDNWHCSLCYRRYFIQHTLLSHLSRRTKRDVAGEFLENVTYKQLMETQQQQELQKGSTQVEQLNVRLSKRHHLDYVAEIESRVQPTSRKRCSLSKCVYCDHIYRYSFSHQLHMRQSHSPMHYSPRWQCYSCSRSFRTRRTYVQHLQRVRQACHQRLRRFKCSSCKRRFQLERSLIQHVAIAHSRSFRCLICNLPSHGRCCDAHSAEECRAAIRKRRQEQGRKPRPPRSSSSKVVCNFCQKKYSTPFLLNIHMKRVHLKQADFICDQCAKAFYSNAGVQEHIKRVHLKTETVYCEPCGLTIAERKNYLRHCDSIRHVEQLRKLAKIKGELPPDAVVEKHVPKGPIIYCEPCDRHIKDYVNFRSHCKTQKHERKLAEQQMRKDSKSEPVHLKTESVYCEPCGQTITNRKNYSRHCDSTRHVEQLTKLAKIQGEIPHDAVVEKHVRKGPLIYCEVCDCHIKEYVNFRSHCESKKHKRQLAEFEKNLDSIIELDIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -