Dneo011919.1
Basic Information
- Insect
- Drosophila neotestacea
- Gene Symbol
- retn
- Assembly
- GCA_035044365.1
- Location
- JAWNMD010000321.1:1521767-1532047[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-26 5.7e-23 81.3 0.0 2 89 20 105 19 105 0.96 2 2 1.1 2.2e+03 -0.7 0.3 7 41 254 294 237 310 0.60
Sequence Information
- Coding Sequence
- ATGCTCATCTCTGAGGATCAAATACAGGAGCTGTATGAAATTAATGATGATCCCAAGCGCAAGGAGTTTCTCGAtgatttgttttcatttatgcAAAAGCGCGGCACGCCCATCAATCGCCTGCCCATAATGGCCAAATCGGTATTGGATCTTTATGAGCTATACAATTTGGTGATAGCACGCGGCGGCCTGGTCGATGTGATCAACAAGAAGCTATGGCAGGAGATCATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCCGCATTCACACTACGCACCCAATACATGAAGTATCTCTACCCATACGAGTGCGAAAAGAAGAACCTCAGCACACCTGCCGAACTGCAGGCGGCCATTGATGGCAATCGTCGTGAAGGACGTCGATCCAGCTATGGCCAATACGAGGCCATGCACAATCAGATGCCACTGACGCCCATTTCACGCCCATCGTTACCgggtggcatgcaacaaatgTCGCCACTGGCGCTGGTCACACACGCCGCGGCAGCTAACAATCAACAGGcacaggcagcagcagccgcggCAGCAGCACACCGTCGACTGATGGGTGGACCGGCTTTTGGCCAGATGCCCAATCTGGTGACACAGGAGATTGAGAATCGGATGATGGAGTATCTGCAGCTAATACAGGCCAAGAAGGAGCAGAGTGTTGGCCCAGTGCTTGGCGCCACACATCCCcatcagcaacaaaagcagcagcaacagtcgctgcatcatcaccaacaacaacagcagcaactgcaacagcagcagcagcaacaacaacagcgacaacgcTCTCAAAGTCCCGAGTTGAGCACGCGCGATGCTTTGAGCGCGCAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCCCACACCTCACCACAGCAACGCGAAGCTTTGAACCTCTCCGACTCACCACCGAATCTGAATCTGAGCCACATTAAACGCGAGCGTGAGCGTGATCCAACACCTGAGCCGACGGATCATGAGGATGCACCGCATCAACCGCCACCAGCCAAACGTGTTGGAAGCGGTCTTATGCCACCTGGTTTTCCTGCAAACTTTTACTTGAGTCCACACAATATGGCCGCTGTGGCAGCCATtacccatcatcatcatcatcagcagcaacaacaggatgCAGCGTCCGAAGGTGAACCGGAGGATGATTATGGAAATGCAGAGCACAATACTACAGGCAATTCGTCGTCTATGAACGATGATAATGAGCCACAGCAGCTGAATGGACATcatcaccaccaccaccatcatcatcatcagaaTCATCTGGACAAATCGGATGATTCGGCTATTGAAAATTCACCCAGCACTTCCACAACGGCATCCGCATCCGGCGGACATCGTCACAGCTCGCCGGTGtccacaaaaaagaagaacgtCAGCAGTAAAGCACAGTCGAGTCCCAAGGATGCACAGGACGAAAGTTGCACTGTCAATGGCGGCGGCAAGTTAAATCCCCTCGAGACACTCAGTCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGTGCAAATGGAGAGCAGCAGTTGATTGTCAACCTGGAGCTGAATGGCATTAAGTACTCGGGTGTCCTGGTTGCAAATGCGGCCAGAACAGACCAGAGAGCCGAGGACTCCGACACGGTAAATGCTGATACCAAGTCCGAGGAGCCAACGTCTGAGGAGGCTAGCAATGCGGTCAAGCACGATAATAGCCAGGAAATCAGCCAGAACGAGGCAATCGACGAGGAAACGGAGCAGCTCACGGATGACATTGTCAATGGAGTGGGCGGTGATGGCAATGGGGGGGCTGTGGGCGTAACCATGCATAAAGATGCTGTGGTCAGTTCGTAA
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQSVGPVLGATHPHQQQKQQQQSLHHHQQQQQQLQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPNLNLSHIKRERERDPTPEPTDHEDAPHQPPPAKRVGSGLMPPGFPANFYLSPHNMAAVAAITHHHHHQQQQQDAASEGEPEDDYGNAEHNTTGNSSSMNDDNEPQQLNGHHHHHHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKNVSSKAQSSPKDAQDESCTVNGGGKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVANAARTDQRAEDSDTVNADTKSEEPTSEEASNAVKHDNSQEISQNEAIDEETEQLTDDIVNGVGGDGNGGAVGVTMHKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00510317;
- 90% Identity
- iTF_00528579; iTF_00585743; iTF_00584958;
- 80% Identity
- -