Dneo004224.1
Basic Information
- Insect
- Drosophila neoperkinsi
- Gene Symbol
- -
- Assembly
- GCA_037043555.1
- Location
- JBAMBG010002730.1:36870-43412[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.048 3.5 8.3 0.2 1 23 1390 1413 1390 1413 0.94 2 13 4.3 3.2e+02 2.1 0.2 1 23 1583 1605 1583 1605 0.91 3 13 0.00017 0.013 16.0 2.7 2 23 1608 1629 1608 1629 0.97 4 13 6.7e-05 0.0049 17.3 0.2 3 23 1637 1657 1635 1657 0.98 5 13 5.6e-07 4.1e-05 23.8 4.1 2 23 1664 1685 1663 1685 0.97 6 13 5.3 3.8e+02 1.9 0.4 5 23 1698 1716 1696 1716 0.96 7 13 1.3 95 3.8 5.4 3 23 1723 1744 1721 1744 0.93 8 13 0.14 10 6.8 0.2 2 23 1755 1775 1754 1775 0.96 9 13 5.3e-05 0.0039 17.6 0.4 1 19 1781 1799 1781 1803 0.95 10 13 1.5e-05 0.0011 19.3 0.5 1 23 1811 1833 1811 1833 0.98 11 13 0.0001 0.0073 16.7 7.6 1 23 1839 1861 1839 1862 0.96 12 13 0.00019 0.014 15.8 5.9 1 23 1867 1889 1867 1889 0.98 13 13 0.028 2 9.0 8.2 1 23 1895 1917 1895 1918 0.95
Sequence Information
- Coding Sequence
- atggtGGACAGTGTGCAGTGCCCCGTGTGCACCTTGTATCTGCATGCGGGCATGAATCTCTCCGATCACTTGGAGACACATCCCAAGGAGCAGGTCATCAAGGCACTGGTGCAAATGACCAttgctggcaacaacaatggtggTCTGGACAGCGCCCTGGCGGCAGCTGTCATCTCCAGCAGCAGTCGCTGCAGCGTTGCCTCAACCGAAAGCGTCGCCTCAACGCCGCCTGCTGTTGATGTCAAACCAGATGTGGCATCAGTaccaacagcgacagcaacacaACCGCCACAGCCACCACAGCCACcccaaccaccaccaccagcagcagcaacaacaacaacagcagcagcatcaacaacaagcacatCGCAAACAACAGCACCCAAAGCTGTCGCATTGCTGgacaacgccagcagcagcagtagcaacaacagcagcagcagcaacaacaataacaacaacaaattgagcaATCCACCGATTAAGGCAGTTAAGAGTGCGCCACCCACGACTGAGGCGCCAGCCACCacatccaacaacaacacacccACCATAAGCAACGTGTCTGCTGTCTATCCGGCAACCCTGGCAACCGACTATCGCtacgaacagcagcaacagcaacagccacagctacagcagcagcaccagcagctgcaTGGCTTTCCACGTGGCACCACCACTACACTGGTGATACCACAAGCGCCGCCGCAACAGCACCACAATTTTCTGGCCAACCAACAGCCGCCTGCGCACTTTGcccatcagcaacagcagccgcagtcgaCCATGAAGTTCACGTATGCAACAGCGGCGTTGCCACCGCCTCCCTTGCAGCTTTTTGCACAGCAGCCGACGGCAACGCAGCCGCATCAGAAGCCTCCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGCATAaccaaaacaagcaacaacaccaacaccaccaacaacagcaacagcaaccacaacacgTAAACGTACAGCAGcataatgcaaatgcagcacCACCGagtggcaaacaacaacacaatagCAAAATCCATGCGGATATCTTTCTGAatccaccgccaccgccacagCTCACAATTCCatcgtcggcgtcggcgtcatcattgtcgttgtcgctgtccCTGTCGTCATCGACCTCCTCAAGACTGCAACATCCCcaacagcaccaccaacaatcCCATGCtgctagcagcagcagcagtagcagtagcagcagtaactATGCAGCAACCAGCTGCGCTCCCAGCTCCTCGGTAGCTCTGATGTCCGGCGCAACGTCGGCACGCGCCAGCAGTCGCCAGTCGAGCAATTCGCCCTTTGGTGCCCTGCTGAATGCGGCTGCACACGCTGCCTGCTCCTCGCCCGCTTCAACTGGGGCGTCTGTGCTGCGGTATGCCGAGTCGCCAGTGGCCCACTATCTGGAGCGGGATAACGGTGATTTCATAGTGCAGGAGACGCCCAAACACATTGTGGAGTGTGTCGAGAAGGACGACGGTGAATTCTCCGTGATTGAGCGCATCTATCAATCGCCACCCAGCGTTCTCCACAtacacgacgacgacgaagaggaagaggaggacGAGGATGATCAGCAGGGtTGGGCAAACAGCGATGAGGAAGATCACATCAAGGTGCCACACGAGCATGTCGAGGATGGCGATGATGAGCACGAGGATAGTCGCAGCCGAGTTGCACCCAAAACGACAACGAAAAAGTCACGCAAGACAAAGTCGAGCGGCAGATTGCACAAGCGCGCCTCCAAGCATCAGCTGGCCACGACGACGGAGGACGAGGACGACTTCATGAGCATAGGCAGCAGTTGTGCCGAAAGCGAGCATCATCCagaggagcagctgcagcaacagcagccgcagcaacagcatccgcAGCAATTAGCATCGGCTGGGGGGGCAGCACAGTTGGCGGCGAGCTCATCCCCAGCTCAACTTTGCACTGCGCCCTCCACGAGCAgtggagctgctgttgctgctgctgctgccgccgccagtAGTGGTAAATTCATGGCCAGCGGCACCATCAAGTCCAAAAAGAATCGGGTAACGGTGCTCAGCGATGTGCCGCTCAACATGAACGAGTATCTGGATCTGGTGGGCAACATTGTCGCCTCGACCCGCATTGGCGCAGCGCGTCCCTTTGCCGCTGTAGCGCCCATACCGCTCGTCAAGGTGGAAAAGGAGGAACCCATGGATGAATATGATGCCGTCGAGGTCGAGATGCAGTTGGAGCAAAAGCCGAGCCTAGAGCATGctagcggcagcagcagtagcagcagcagtagcagcaacagtagcagcagcagcagcagcagcagtggacaTGGCACCACCAGCGTGATACGCATGGCTAGCACCAGTGCGGCGAACGTTGCCGCCGAGGATCTCACACAGCCGCTACCGATGAAGGTGGAGGTGGAGCCAACGGCGCTGCTGCCGCAACGCTTCTCGGCACCGGGGCAGCTGCGTGGACCCAAGAAATTAGTCATCAAACCAAAGGCCacagcgacggcaacggcgacgtcAACGACGAAAAAGACTGAGAACaacgctgctgccgttgctactggcagcaacagtagcaattGCGCCGAATCCCATAGCATATCAGTGAATACGCCCGCCGAGCTTGTGCAGATCAAGAGCGAGAATGTGGAGGCGTCCACAtccagcagtggcagcataTTGGAAAAGCATCTGACTACCAGCTATGCGGCACAGCAGGCGGCACGCAAGCACTCCGCCGTCAACGATGACGATGCACGTGTCCTGCTCGAGTTTGCCAACTCGAAGCAGCTGCCGATGCCGGGCAATAGCAATCATACCACGTTTGTGGTGAACGCGGCCAGTTTTGCGTCGGCGGGTTCCGTATttgccagcggcagcagcagcggcggtgTCAATGTGCAAAAGTCAACCAAGCCGGGCTGTGGCGATGAGTACATTCTGCCCGATGACACCAAACTGGAGGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTATGCCTCCAcctcgcagcagcaacagcagcatctccaacaacaaacacaacagcagcagcagcaacaacaatcttTGCAGCAGGCGCAACCATCCGCTTTCACTGAGTTTAGTTTTCTGTACcaccaaaacacaacaacaacaacagcagcagcagcagcagcagcggcaacaacggcGACATCTACTACTTCCAACTTTGCACCGTTTGGCattcagcaacagcaacaacagttgcagttgcaacatcATCCGCAGCATGGGTCCAGCGAGGCAACCAATGCCGCAACGCTTGCATCCTCGTCGAGCAATTCGTCTGCATTGGACCAGGAGTGCTCGATGAATGCCACGTTTCGCGTGGCAAAGCCACAATCAATGCTGGGCGCCTGGTATCAGCCACATCAGGCGCAGCATCAGGTGACATCTTCGCACAGTCCACAACATGTGGATCAGCCGAGCAATTTTATTGCGGCTCTGTCTGCCGTCGACTGCTGCAGTGCAGCCGTCGATAGCGATATGAGTGAGGCTAAATACTTGGATCTGGATGCCTGCAAGCGGGAACAgctgagcaacagcagcagccatatGCCCTCCGCTTCGACATCGACCACATCGTCATCGTTTGCTGCCGCAGCAACGGAGAGCAGTCTCGTCGGTGGCCTGGGTCTGAATATACGCACCGATGAGAAGATGCCCGCCAAGGGTGAGATTTCCGAGCAGGAAAGCAACTGCGACATAGAAAACTCTTGGAGTCAATCGATGTATGGCGACATATCACAGCGTTACTTTAGGAATCAGTTCACGGATGGCTACAATCAGCAGCTGGCCGATTGGCGTCACGACTACTATCCGGCGCAGGATCTCagtggccagcagcagcagcagcgagagcAAAAACGATTTGACTTCAATGCGGTCGCCTCGGAGTATGCACAGCCGGGGGAGCTGGAAGCTTCCTCGAGCTCAACGAGAAACAATCATTTGTTGGATGCACAGCCCACCACTTCCTCGTCGTCATCGGCTTTGTTGGCTGGTCCACCAATAGCCTCGACATCCCGCGCTGCCGCCGAAGCGGAGGCGGTTGCAGCAGCGCTGGCTCAACGGAAGCCAGCACGTCGCAAGATCTACAAGTGTCCACACTGTGTGGCCATCTTCGAGAAGCTAAAGGAGCGCAATGCGCACATGATTGGCGAGCACAACTATGTGCGCCAGAATCGGCGTCTCATCTGCACGCAGGCGCTGGTCAACGCTGCGATACTGACCCAGCCGCTGGCTCAGCAGCCAGAGCAGCAaatggagctggagcagcagcaacagcatcagttGCTGCATGTGAGCCACAGCACGGGCGGCGCCGAGCACGAGGATTCCAAGGATGGTATTGTGAAGATTAAGCAGGAACACTGTCAGGACAAGCACGATCCAGCAGCGGAGCAATTGCTTGGCCACTTGGAGCTGCCGGATGTGAAGGATGCTGGCCTGCTTGAAGCCAGCGGTGAAAACGGACGCGATGCGGACATGAAGCCACCAACCACTGTTGCCGAGCTGGACGAGAAACCGACCATAGCACCGCTGGCCATGACGACGCCCGCTGCCAAACTGGCTGCTCTTTATCGCATGCTAATTGCCTACAACGAATCGAAGCTGGGCCAGGAGCGCAACAATCTGAGCGAATTGGAGCAAAAGGCCATGGAGAAATCTATATTCTTGTGCTACATTTGCCGCACCGATTTCCCCTCTGTGAAGCTGTACGATGCGCATCTAACCGAGCATCCCGCCGAGTGTTTCACCTGTGGCAAGAAATTCTATCGCTGGAAGAACTTCTCGCTGCACCTGAAACGCCATCTGGGCTGGAAGGAGTTCGGCTGCTATGTCTGCGACAAGAAGTTTGTGGTGCGCAGCGCTCTCGTCGAGCACATGCGGATGCACACTGGCCAGACGCCACTCAAGTGCAAGATATGCGGCAAGAAGTTCAAGCGATACTCGAACTTGACGCAGCATCGCAAGCGCCACACTAAGATGACGGTGCGCAAAAAGGAATATGTGTGCCACTGTGGCGAAGTGCTGCCCTCAAAGGCGCGCTTCCTGTGGCACAAGGAGACGCACGACTTGAAGCCCAAATGCTGTCCGTACTGCTGCGATCGTTTCGTGCATGCGAACTCGCTGCGTCGACACATCCGGCTGGCGCATTCGGACAAGTTCGACTATGCCGAGCCGATGGAGTGTCCCATGTGCAAGCAGATCTTTGCCAAGACATCGATTAAGGCACACATGGCGACGCACTCGACGGATCCGCAATATGATTGCGCCATCTGCAACAAGAGCTTCTCCACTAAATGGAATCTCAAGATACATTCGTGGGTGCATGCGAATCGAACGGCCAAACCGTTCAAGTGCGAGTACTGCCCCAAGGCGTTCGTGCGCGAGTTGGACTTCAAGAATCATATGAATGCGCACAAGCAGATCAAGCCGTACACCTGCGAATATTGCGGTTGCAAGTTCATACGCAAGTACAACTATATGCGGCATAGGCGGGAGCATCATGGCAACAAGAAGTTCACGTGCGATCAATGCGACAAGTCTTTCCATCGCCATTACTATCTGATTGAGCATCGGCGCATTCACACTGGCGAGCGACCCTTCCACTGCACCATCTGTGGCAAGAGCTCCACCACAAAGACCAATCACAACAAGCATCTGAAGATTCATCATTCGCGCGATCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNNNGGLDSALAAAVISSSSRCSVASTESVASTPPAVDVKPDVASVPTATATQPPQPPQPPQPPPPAAATTTTAAASTTSTSQTTAPKAVALLDNASSSSSNNSSSSNNNNNNKLSNPPIKAVKSAPPTTEAPATTSNNNTPTISNVSAVYPATLATDYRYEQQQQQQPQLQQQHQQLHGFPRGTTTTLVIPQAPPQQHHNFLANQQPPAHFAHQQQQPQSTMKFTYATAALPPPPLQLFAQQPTATQPHQKPPPAYGAAISQIRSQHNQNKQQHQHHQQQQQQPQHVNVQQHNANAAPPSGKQQHNSKIHADIFLNPPPPPQLTIPSSASASSLSLSLSLSSSTSSRLQHPQQHHQQSHAASSSSSSSSSSNYAATSCAPSSSVALMSGATSARASSRQSSNSPFGALLNAAAHAACSSPASTGASVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDEEEEEDEDDQQGWANSDEEDHIKVPHEHVEDGDDEHEDSRSRVAPKTTTKKSRKTKSSGRLHKRASKHQLATTTEDEDDFMSIGSSCAESEHHPEEQLQQQQPQQQHPQQLASAGGAAQLAASSSPAQLCTAPSTSSGAAVAAAAAAASSGKFMASGTIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASTRIGAARPFAAVAPIPLVKVEKEEPMDEYDAVEVEMQLEQKPSLEHASGSSSSSSSSSNSSSSSSSSSGHGTTSVIRMASTSAANVAAEDLTQPLPMKVEVEPTALLPQRFSAPGQLRGPKKLVIKPKATATATATSTTKKTENNAAAVATGSNSSNCAESHSISVNTPAELVQIKSENVEASTSSSGSILEKHLTTSYAAQQAARKHSAVNDDDARVLLEFANSKQLPMPGNSNHTTFVVNAASFASAGSVFASGSSSGGVNVQKSTKPGCGDEYILPDDTKLEVDEIVISSSSSYASTSQQQQQHLQQQTQQQQQQQQSLQQAQPSAFTEFSFLYHQNTTTTTAAAAAAAATTATSTTSNFAPFGIQQQQQQLQLQHHPQHGSSEATNAATLASSSSNSSALDQECSMNATFRVAKPQSMLGAWYQPHQAQHQVTSSHSPQHVDQPSNFIAALSAVDCCSAAVDSDMSEAKYLDLDACKREQLSNSSSHMPSASTSTTSSSFAAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFTDGYNQQLADWRHDYYPAQDLSGQQQQQREQKRFDFNAVASEYAQPGELEASSSSTRNNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPARRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQALVNAAILTQPLAQQPEQQMELEQQQQHQLLHVSHSTGGAEHEDSKDGIVKIKQEHCQDKHDPAAEQLLGHLELPDVKDAGLLEASGENGRDADMKPPTTVAELDEKPTIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYICRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00583141;
- 90% Identity
- iTF_00564835;
- 80% Identity
- -