Dneo013373.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila neoperkinsi
Gene Symbol
ttk
Assembly
GCA_037043555.1
Location
JBAMBG010008449.1:35589-39703[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5e-19 1e-15 57.2 0.0 2 45 618 662 617 662 0.97

Sequence Information

Coding Sequence
ATGTCTGTGCAGCAGTTCTGCCTGCGCTGGAACAATCACCAGCCCAACTTCATATCGGTCTGCTCATCCCTGCTGCACAATGGGACGCTAGTCGATGTCACGCTCGCCGCGGAGGGCCGCCAGCTGCAGGCCCACAAAATTGTGCTCTCCGCGTGCAGTTCTTACTTTCAGGCGCTCTTTACAACGAATCCGTGCCAGCATCCGATTGTCATACTGAAGGACGTGCAGTACGATGATCTCAAGACGATGGTGGATTTCATGTACTATGGCGAGGTGAATGTGTCACAGGAACAACTGCCGCACATTCTGAAAACGGCGGAGATGCTCAAGATCAAGGGCCTGGCCGAAATGCCCACTGATCCGGCCAACCTCACCAAGTCCGACAGCAAATCGTCCAGCGAGGCGACCGAGTTGCTCGGTCAGGCTGGCGCCAATGTGGCCGGcactggtgctggtgctgcagcgTCTAGTCTGGGTGcagccagcggcagcagcagtgctggCGATTCGCTTTGGAGCAGCAGTGAGGCGCAGCAATttcagcagcatcatcagcaacagctgcagcaacaactgcaacagcaacagcagcaggcacaacagcagcaacaacagcagcaggcgcaacagcaacaacaacagcagcagcaacaggcgcaacaacaacagcagcagcaacaacaacaacagcagcagcagcaacagcatcatcatcaccatcatcatcaccaagcacaacagcaacaacaacagcagcagcaaggggGCAGCCAAGCGCAGGGTTCGCAGACGCATCACCATCAGCTGAGGCGAACGCCATCGCCGCTAAGTGCTGGCACCTCCCCGGCCACGCGGCGCAAGCGCTTGCGTAAATCCTCGAATAACGGTTCTGGTGATCGCAACAACTCGGAGGAGCAGCACAGCAGCTCACTGGATGCAACTGGCGCcgctggcagcgctgctggGCTGAGTCTGGCACAGATGAGTCAAATGTCGTTTGGCGGTGGAGCGGGTAATAATTCGACTGCAGCACTTGGCAGCCTCGCGGGGCACTCGATGCATGCCTCCAAGCTGCTGAAGGAGTCAGCGAATACTGAGCTAGAGCAACAGCCGCAGGATTCGGATCTGGACGATGCTCACggacacatacatatgcaaattAAGCCGGAGGTGGACATCGGCAGTGTGAATCAAACGATGCCCCTGGACATTTCTGGCACCACAACACCATCGGAACACGACGCGCCCAATTCACAATCGTCACACTCTGGTCTGCAGTGGACAGTTGTTGATTCAAACTATTCGCGCTTTTCGATGCCCGCCTGCCAGTCCAATTTgattggcaatggcaacggcaacggcaatcAAACAAGCGCCGCGAATAGCAATGCCGGCGTCGGTACCGCCGGCACCACCGCCGACcagcgccaacagcagcagcagcacgaagCTCAGCAGCAggcgacgcagcagcagcaacaacagcatctgcagcagctgcactatcagcagcagcagcaacaacaacagcagcagcagggcgcCACAGCTGGTCAGGCGTACTCGTCGCAAATCATAACCGTAAATAATCTGGTCAGCGGGTATGCAACGGCCGCTCAAAATCTATCGCCCACATCGCCCAACGAGTCCAATATGGTGCAGTCCGTCTACAGTCAGGGTCCGACGCCCACACAGTCGCCTGTCCACTCCGGCgtgggcggcggcggcggcagcagtgcGGGTGGAAGTGCGGGCAgtgctggcggcggcggtggtggcaatagcagcagtggcggaggcggcagcagcagtcaagTGACCAAACGCAAGCGATCCGTAAATCCCCAGGGCGATGAGAATTTCATCAGGGCATTGGAAGCGGTGCGCACCGGCGGCATCGGATTCTGCAAGGCTGCTCGCCTCTACGGCGTGAACAATCGCACGCTTTGGCTGGAGTACAAGAAACGCGGCTATCCGGTGTCGAGACCGAGCATAAAGGCGCGCGTCGTCAAACAGGAGCCGAATCTATCGCCCTCGCCCACACCATCCACAAATCCCGGCGACGATACGACCAACGAAACATATGATCATCTAACCGCTGCAGCCGTTGCCGCAGCACAAACGGCTGCGCTCAACATGCAGATACCGCCGCAGACGGAGACGCCGACGCCATCGCTGATGTGCGCGCCGCATCATGCGAGCGCAGGAACGGCCAACTCAGCCGGTGGGGCCAACACGCATCCGACCATCGGCGTGATGAGCCTTTTCGATGCCCGCTACATGGACTCACCGGCCAGCGTGCACACCATGTCCCGGCAGAGGTATATCGATGCGACGGGCGCcggtgcagctgctgcagcgtcGGGAGCGGGCACAATCAATGTTAATCCGGCCGCTGCAATGAATCTACAGAGTATTAACTTCAACTCAATATAG
Protein Sequence
MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSSEATELLGQAGANVAGTGAGAAASSLGAASGSSSAGDSLWSSSEAQQFQQHHQQQLQQQLQQQQQQAQQQQQQQQAQQQQQQQQQQAQQQQQQQQQQQQQQQQHHHHHHHHQAQQQQQQQQQGGSQAQGSQTHHHQLRRTPSPLSAGTSPATRRKRLRKSSNNGSGDRNNSEEQHSSSLDATGAAGSAAGLSLAQMSQMSFGGGAGNNSTAALGSLAGHSMHASKLLKESANTELEQQPQDSDLDDAHGHIHMQIKPEVDIGSVNQTMPLDISGTTTPSEHDAPNSQSSHSGLQWTVVDSNYSRFSMPACQSNLIGNGNGNGNQTSAANSNAGVGTAGTTADQRQQQQQHEAQQQATQQQQQQHLQQLHYQQQQQQQQQQQGATAGQAYSSQIITVNNLVSGYATAAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHSGVGGGGGSSAGGSAGSAGGGGGGNSSSGGGGSSSQVTKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDTTNETYDHLTAAAVAAAQTAALNMQIPPQTETPTPSLMCAPHHASAGTANSAGGANTHPTIGVMSLFDARYMDSPASVHTMSRQRYIDATGAGAAAAASGAGTINVNPAAAMNLQSINFNSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00490703;
90% Identity
iTF_00606986;
80% Identity
iTF_00498220; iTF_00499508; iTF_00557272; iTF_00498073; iTF_00576985;