Dneo002463.1
Basic Information
- Insect
- Drosophila neoperkinsi
- Gene Symbol
- retn
- Assembly
- GCA_037043555.1
- Location
- JBAMBG010001652.1:1-9860[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-26 5.9e-23 81.1 0.0 2 89 10 95 9 95 0.96 2 2 3.1 5.5e+03 -2.2 0.1 21 41 258 283 233 296 0.57
Sequence Information
- Coding Sequence
- CTCTACGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATgatttgttttcgtttatgCAAAAGCGAGGCACGCCCATCAACCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTGTATGAGCTATATAATCTGGTGATAGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCCTACGAGTGCGAGAAGAAGAACCTCAGCACTCCCGCCGAACTGCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCGCTGACCACAATTTCGCGACCACCGTTGCCGGGGGGCATGCAACAGATGTCGCCACTGGCGCTGGTCACACACGCGGCGGCTGCGAACAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatcgCCGGCTGATGGGCGGACCGGCCTTTGGTCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAATATCTGCAGCTCATACAGGCcaagaaggagcagcagcagcagcaacagggtGCACCAGTTCTGGGCGCCACACATccccaccagcagcagcagcagcagcaacaatcgctGCTTcatcaccaacaacaacaacagcagcaacagcagcagcagcgacagcgctCACAAAGCCCCGAGCTGAGCACACGTGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCCGATTCGCCGCCAACTTTGAATTTGAATCACATAAAACGGGAAAGGGAACGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCACTTCAGCCGCCGCCGGCGAAACGTGTGGGCAGCGGCCTAATGCCGCCCGGTTTTCCCGCCAACTTCTACTTGAATCCCCACAATATGGCCGCTGTGGCAGCCGCCGCCGGTTTTCATCACCAGGCCGCcaacaatcatcatcatcatcagcagcagcagcagcagcaacaatcgcagcagcagGATGCAGCGTCTGAGGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCATAACACCACCGGCAACTCATCGTCGCTGCAAGATGACAGTGAGCCGCAGCAGCTGAATGGACACCACCtccaccatcatcatcatgatcataACGATCTGCATCATGATCTGCATCAtgagcatcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCAcatcgacaacgacaacaacaacaacttcatcATCCACATCCAAATCGCATCGTCACAGCTCGCCGGTGTccacaaaaaagaagagcagcgtcaactgcaacagcaacagcggcagcaacaacaacaacaacaataacaagacgCAATCCTTGTCGTGTGCGAAGGatgcaggcaacaacagcagcagcagtgccagcGATGCCAAACTGAATCCCCTCGAGACGCTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCAATGCAAATggcgagcagcagctgattgTCAATCTCGAACTAAATGGCATTAAGTACTCGGGTGTGCTGGTGGCAGCCacccaagcagcagcagttgcagcagcagccaagccAGAGACAGGACAAGCTGAGCGGGAGCAGGCAGAGacgccaactgctgctgctgctgctgctgctgctgaggagCCAGCAGtgaggagcagctgcagcagcactgACGATGAGCTCAAGCATGAAAACAGCCAGGAACTTGGCCAGAACGAGGCAACCGATGAGGAAACAAcgcaggaacaacaacaacaacaacagcagcagcagcagcaacaacaactcacaGATGAGATTGTGAATGGTGCAGGAATTGGGGGGGTTGGTGTCGGGGTCAGCGGTGCAGTGGGTGCAAGCCTGCTTAAGGATGCTGTGGTCAGTTCATAG
- Protein Sequence
- LYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQGAPVLGATHPHQQQQQQQQSLLHHQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEETALQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHHQQQQQQQQSQQQDAASEGEPEDEYGNGEHNTTGNSSSLQDDSEPQQLNGHHLHHHHHDHNDLHHDLHHEHHHHHQNHLDKSDDSAIENSPSTSTTTTTTTSSSTSKSHRHSSPVSTKKKSSVNCNSNSGSNNNNNNNKTQSLSCAKDAGNNSSSSASDAKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAATQAAAVAAAAKPETGQAEREQAETPTAAAAAAAAEEPAVRSSCSSTDDELKHENSQELGQNEATDEETTQEQQQQQQQQQQQQQLTDEIVNGAGIGGVGVGVSGAVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570178;
- 90% Identity
- iTF_00516774;
- 80% Identity
- -