Dneo013419.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- -
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000019.1:995185-1000192[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00019 0.015 15.8 0.8 1 23 147 169 147 169 0.97 2 15 1.1 87 4.0 2.1 1 23 175 198 175 198 0.90 3 15 0.00018 0.015 15.8 2.5 1 23 367 389 367 389 0.98 4 15 2.3 1.9e+02 2.9 2.9 1 23 395 418 395 418 0.91 5 15 1 82 4.1 1.6 1 23 435 458 435 458 0.91 6 15 0.001 0.085 13.5 1.9 3 23 749 769 748 769 0.92 7 15 0.042 3.4 8.4 1.4 1 23 775 798 775 798 0.98 8 15 0.12 9.6 7.0 1.8 2 23 835 856 834 857 0.93 9 15 0.0046 0.38 11.4 1.9 1 23 878 901 878 901 0.97 10 15 0.0017 0.14 12.8 0.2 1 23 1091 1114 1091 1114 0.90 11 15 0.023 1.9 9.2 5.2 1 23 1126 1148 1126 1148 0.98 12 15 2.2e-05 0.0018 18.7 2.8 1 23 1153 1176 1153 1176 0.96 13 15 0.0016 0.13 12.9 4.4 1 23 1186 1211 1186 1211 0.95 14 15 3.8e-05 0.0031 18.0 1.3 1 23 1216 1238 1216 1238 0.97 15 15 9.4e-05 0.0077 16.7 0.2 1 23 1245 1268 1245 1268 0.97
Sequence Information
- Coding Sequence
- ATGGCAATGCCAAGTCAATTTGACAGAAAAAGTAACCCAACGGGAAGGGCGAAAGTCGAGCCCAATATAAATTACAAATACGCTTGTCGGTGCTGTCTCAAATCGGACGCAGAGTTTGTTAATCTGGATACATTGACGGTGGCGCGAAATCTAGATCCGAGTGAAGCATCTGACCAAATACCGTTAATAAAATGCCTGCTCTTTTGCATACGCTCGGAAAATACTCTTGAATTGCCCAGATTAATTTGCATTGATTGTAGCAAGAGCTTGCAAATTGCCTACTATTTCCTTCAAAATGCTTTGCGTGCTAATGAAATCCTTTGCCGGAAACTGTGTCCAGACAAGTTAAAAAATTCACCCTTTGCGCTGTTCAATGGCAATATTAGTCGTGAGAAGGCGCCAACAGAATTTGTTCCACCGGGCAAAACCGGAGTTCGCCATGAATGCAAAATTTGCGGTACAATTGTATACAATCGAATGGAACTAAAACAGCACATACGCCTGCACCGAGATGCTGTTGCTCACAATTGCACATTGTGCAATTTTGTCACAATGAAACAACGCCAATTGATAGAACATTATAGCTTTGTCCATCAATTGACTACCGAACAGGCCGAGGAGCGCATTAACTCCGAGAATACCATTACAGAGGAACGTGACGAAAATCAACAGGAAGATGGTAAAGTATGCACTCTGGAAGATCTTGAATTGCTGATACCGACTGTGCTTAGACCAGAGGATTATGCGAAGCCTAAGGTTGAATACGACGTTAATAATCAATTGATTGCTCCTTCAACGAGCAAGGAATCGAATGGCAGCAATATTAGTATTGGTACGGAATTTCTAGTCTTACCAGATGGATCCCTCCAACAATTAAATGGTGCTGGAGTTCTTATTGAGTATATTGATGATAGCAAGAGCAGTGTCCCACCAGCTGGTAATTTAAATCTACAAACTCTTCTAGGGAGCGATAATGTAGACGTTGCTCCAATGGATATAGATATCAACGAGCTGATTGTAGAAGATGCCCTTCCAAAAATAAAAGCTAAACCAAAGCCGGAAAAAATTACATTATCTGGTTCACCTGCTACATTTAAGCATAAGTGCAAGCTTTGTACGAAAGCCTTTCCCACCTTGGCACGACTTAAATCTCACCAATTAACGCACAGCCATTTACCCAAATTTCACTGTGACCAGTGTAGATTCTACTCGTTGAGGAGCTCTGATCTCGCTAATCACTATAAGACAATCCACAGTATACAGGACAATGAGAAGGTGCAGCCTGTAGATGATTCGCGTATTTTTTCCTGTGATCTTTGTTTGTTCGAGACCAGGAACTCACGCACACTACGTGATCACTACACTGATAAGCACTTGGTACGTCCAACAGAGGTGCAGTTGCGTCCAAGTTGGACCGCTGAGATGGAAGCGATTCCTAGCACGACAGTTAATTCCAACGGAACAGCTCCGACCTGCGAGGTTGTCTCTAATCTTATCTCAGATCATAAACAAGGGACTTTTATTCCATTGGACATTAAATATCCTGATACTGAGATATTGCCCCAAGATACCGTCACAGATATTATTCAACAACCGCAAGCAACAACAACAGCAACAATTACACCAATGGGTGGTATTAGCGTCGTTGTGGATGCCACGCCATTGTTCTTTGGCGCTAACACAGATACTGCTCTCACTTCATCATCGCAAGCTCCAATAATTCCTCTTGCTGTTGATAGCAACACCAACTTTACAGCGTTTCCAGAAATCTCCGCCAGCGACGACATAGTCTCATCATCTGAGTCACCAATGCCAACGATGCCAAATCAGGATCTTCCGGTGATGTCCAATCAAAGTCTACCGACAACATCAACCAATACCAATACAATATTCGGCGATATGCAAGACTTTATAGATAACACGGATGTGGCTGCCATATGCACAATACCAGCAGATGATATGCCCGTTGTGGATGGTGATGATATTGTTATAGATAACAATAATATTAGTTTAGATTTCGATGCGGAAAATCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCAAAACATCTACAGAAACCATATTGCATTTATTGCAACAAAAAGTTTACAAGCCAATATAAGTTTGAGAATCATATGTTTGTTCATCGGGGTCTAGCCCCCTACCGTTGTGAGCTCTGCACGAATCTTTACAATATGAAACGTCTACTAATAAGACATTACAAGACAGTACATAAACGCATGCCATCTCGAGACATGGTTCAGGCAAAGGGGGAGAAGATATCAGTGGCTCGCTCAAATAAGGAGACAATTCAAACCGATGTTAATAAAAATCCAATGCTAATGTGCGCCAAATGTCCATTTGAGTGTGAGTCGCAGGCAGAGATGAGAAAGCATTTAAATGCTCACCATGGCATAAATGATGGTGTTTCCGCTCACGCCAATGAGGTATTCATTATACGCAAATTGCCATTTGAGTGTCCGCGTTGTATACGCTCGTTTGCTGCGAAACATACACTAACACGACATTTGCAACGTAGCCATTTGGTGGACACTATAATCGAGGTAACAAGTTCGGCAGAAACAACTACCAGCAATACAGTCTCGTCGACCAATGCAGAAGATACCGGAAATAAACAGGTTGCCATTCTGATGTCCCCGTCGATGGGACCTGAAGTTGATGGTGGCGAATGCGAAACGCCACGCGACACACTTGATAGAGATGGGGCAGTGAAAGTTGAAGCTGCTGTCGTAGATAATGAAAATGTGATAAACAATTCCACTGCCACTGCTCCAGGAGCAACTACAGCGGCGCCAGCAGCTTCGCCGACAACAACAACAACATCATCATCCTCAACTCTTTTCCCTACACCCACGCCCTTTGATTTTGACTATGATTTTATGGGCGACGCTGTCAACTCCACGCCAAGTACCAGCACTAACAACAATAACAATAATAACAACAACAACAGTACAGCTGATGGTTACACAAAGGAATCGAATGAACTTCCAAGCCATATTCTCAATGGCTGCGATGAACTTTTAACTGCAGCCGCAATGGTTCCGTTACCCACAAAGGATGCACGATCGCGCCTTCCACACACTCCAATTTATGTATGCAAATTGTGCAATAAGACATTCGATGAACTGGGTAAATTAGTAAAGCATGAAGCTGAGGAGCATTCCAGCAGTGAACCGCGACGCGTTGTTTTTCAACACAAGTGTTCGGTTTGCAATTCAACATTTCGAACATTGACGTTGCTCAAGTTCCATATGAAACGACACTTGGCACGTAGGTTTCAATGTAGTCGTTGTTCAAAGTCCTTTAACAGAAGACAAGAATTGCAGCGGCACGTGTTGAGCAAGCATGAAAGGCAGGATGGCAAAGAAAAAGTGTTTAGATGCTCTTTAGACGGCTGTAAAAAAACCTTTAACTACAAACATCATATGGTCCGTCATCAAAATGCGGTGCATCTCAAGATTCGTCATATATGTAATCTTTGTGGCGAGGATTTAAAAACAAGTTTTAACTTAAGGAGTCATATGCGCGTACACAGAGGCAATGGAAAGTCGTACAAATGTCCCAATTGCGAACGGTCATATGTGAGACGCGGACCCCTTCAACAACATGCTCGACAGGCACATCAGATTGAGCTAACTGATAGCGACTGGCCCCAAATGCTATGCAATAATATATGCTCCAACAATTCTCGCAATATTAAAGTCTCTGCGCGTAGTAACAAGTCCTCCACAAAAGAACATGGCGACGATTAA
- Protein Sequence
- MAMPSQFDRKSNPTGRAKVEPNINYKYACRCCLKSDAEFVNLDTLTVARNLDPSEASDQIPLIKCLLFCIRSENTLELPRLICIDCSKSLQIAYYFLQNALRANEILCRKLCPDKLKNSPFALFNGNISREKAPTEFVPPGKTGVRHECKICGTIVYNRMELKQHIRLHRDAVAHNCTLCNFVTMKQRQLIEHYSFVHQLTTEQAEERINSENTITEERDENQQEDGKVCTLEDLELLIPTVLRPEDYAKPKVEYDVNNQLIAPSTSKESNGSNISIGTEFLVLPDGSLQQLNGAGVLIEYIDDSKSSVPPAGNLNLQTLLGSDNVDVAPMDIDINELIVEDALPKIKAKPKPEKITLSGSPATFKHKCKLCTKAFPTLARLKSHQLTHSHLPKFHCDQCRFYSLRSSDLANHYKTIHSIQDNEKVQPVDDSRIFSCDLCLFETRNSRTLRDHYTDKHLVRPTEVQLRPSWTAEMEAIPSTTVNSNGTAPTCEVVSNLISDHKQGTFIPLDIKYPDTEILPQDTVTDIIQQPQATTTATITPMGGISVVVDATPLFFGANTDTALTSSSQAPIIPLAVDSNTNFTAFPEISASDDIVSSSESPMPTMPNQDLPVMSNQSLPTTSTNTNTIFGDMQDFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDAENLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPSRDMVQAKGEKISVARSNKETIQTDVNKNPMLMCAKCPFECESQAEMRKHLNAHHGINDGVSAHANEVFIIRKLPFECPRCIRSFAAKHTLTRHLQRSHLVDTIIEVTSSAETTTSNTVSSTNAEDTGNKQVAILMSPSMGPEVDGGECETPRDTLDRDGAVKVEAAVVDNENVINNSTATAPGATTAAPAASPTTTTTSSSSTLFPTPTPFDFDYDFMGDAVNSTPSTSTNNNNNNNNNNSTADGYTKESNELPSHILNGCDELLTAAAMVPLPTKDARSRLPHTPIYVCKLCNKTFDELGKLVKHEAEEHSSSEPRRVVFQHKCSVCNSTFRTLTLLKFHMKRHLARRFQCSRCSKSFNRRQELQRHVLSKHERQDGKEKVFRCSLDGCKKTFNYKHHMVRHQNAVHLKIRHICNLCGEDLKTSFNLRSHMRVHRGNGKSYKCPNCERSYVRRGPLQQHARQAHQIELTDSDWPQMLCNNICSNNSRNIKVSARSNKSSTKEHGDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00501271;
- 90% Identity
- -
- 80% Identity
- -