Dneo008318.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000003.1:8822568-8827327[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-123 4e-119 397.4 26.8 1 299 64 354 64 355 0.99 2 2 0.05 9.6e+02 -1.1 3.7 210 241 374 404 356 428 0.53
Sequence Information
- Coding Sequence
- ATGGATAGTACAAGCGCTACCGGTCGACGGCGAAACAATACGCGAGTCAATGCCGAGGATAATGCTCTAGATCAAATCACAAAAGAGGTATCACCATGTCTGATTGACGATCATGACGAACCGTCCGTTGACGACAGTGAATCGGAAGATGAAGTTTTAGTGCAATTTTTGGGCGAGGCAAATCGGATTGCCGAAGCGCGTTTGGCAGCTCGTCGGCAAGCTCGAGCCGAGGCTCGTGAAATACGCATGCGGGAGCTTGAGCGTCAGCAAAAGGAGCAAGAACAGAATGCCGACCGGGTTTTTGATATGCAAAACCCCAGTTGCAGCGGAGACACAATTACTGGCCATCCTGCACGTCTTGTTTACGGCGGTGCCCTTTTAAATGTAACCCGTGCCACAGCATCGCGTCGCAGTAGCGAGGATTCATTAGAAGATGAAAGCCGAAGTTTACGCGACATGAAACATGAGCTTAAAGACGTTGAAGAACGGTTCCGAAAAGCAATGATAACGAATGCTCAGCTAGACAATGATCGTGCCTCACAAACATACGAAGTCAAGCTACTCAAGGACAAAAGCGAAACCATGCAGGAGTCGTTGGCTCAGCTTCAACGCGAGTACAAGGAAAAAATGCGCGAATATAATGCATTGAAACGTAACTTGGATCGCACCACTTTGGAGCTAAAACTGGTACAGGGCCAGTTAAATGAGCGCGATTCATTGATAGCGGAACAGGGCCTTGTGATTGTAGCTATTGAGAATTCCGATGGCAGTGATGCCAAGCGGGCTCTAGTCAGTGTTGATAACGCCAATGTCTTAGCCTCTGTGCAGGGTTCGTTAGATGTAAGACTTAAGAAATTTAGCGAAGATAAACAACAGCTTCTTGCGGAGGTAAAGAAGCTTAATGATCAATTGGATGAGTATAAACGTGACGGGAAAATAGGCCATGGCAGTTCATCGTATGGCACGTTCGGCTACGACGATGATTATGAGGCTCAGAGAGAAGCAAATAAAATAATTTCGGATTATAAGTATAAACTGCAAAAGGCTGAACAAGAAATTGCAAGTCTGCAGGCGAGCTTAGCACGTTCAGAAACTCAGGTTATACGATACAAGAGCACAGCGGAAGCAGCTGAGAAAGCGGAGGCCGAATTAAAAGTAGAACGGCGTAAACTGCAACGTGAGAACCGTGAAGTTTTGGAGCGACTGGAAGAAGCGGAAACAGCTAATAATCATTTACTGAAACGGCTTGATAAATTAAAAAATGCAAAGAGCGCAATCCTCAAGGACTTATGA
- Protein Sequence
- MDSTSATGRRRNNTRVNAEDNALDQITKEVSPCLIDDHDEPSVDDSESEDEVLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQNPSCSGDTITGHPARLVYGGALLNVTRATASRRSSEDSLEDESRSLRDMKHELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDKSETMQESLAQLQREYKEKMREYNALKRNLDRTTLELKLVQGQLNERDSLIAEQGLVIVAIENSDGSDAKRALVSVDNANVLASVQGSLDVRLKKFSEDKQQLLAEVKKLNDQLDEYKRDGKIGHGSSSYGTFGYDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRENREVLERLEEAETANNHLLKRLDKLKNAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00600311;
- 90% Identity
- iTF_00600311;
- 80% Identity
- -