Dneb001071.1
Basic Information
- Insect
- Drosophila nebulosa
- Gene Symbol
- Znf574
- Assembly
- GCA_018150735.1
- Location
- JAECWO010000061.1:233527-234833[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.71 6.4e+03 -2.6 0.0 24 35 54 65 34 81 0.60 2 7 0.0032 29 4.9 0.1 27 49 138 160 134 165 0.88 3 7 0.00014 1.3 9.2 0.0 20 48 183 211 176 214 0.90 4 7 0.00019 1.7 8.8 0.0 24 52 216 244 211 246 0.84 5 7 0.0023 21 5.4 0.0 23 48 249 274 246 279 0.90 6 7 0.0013 12 6.1 1.7 26 49 282 305 275 310 0.89 7 7 0.33 3e+03 -1.6 0.1 25 43 310 328 304 331 0.82
Sequence Information
- Coding Sequence
- ATGGTAGCCTGTGTGCTTTGTTTGAGCTACTGCTCTATTGAGACGGCGCTGGGCCTCTCCTCGGTCGAGGGATTGAGGCTAAATGTTCGAGGAAAAATTAGCAAGCATTTCTTGTTCTTTGAGTTACCCCAAACGGAGAACAGCTCTTCCAGCTCATTGGAGGTAATATGCCAGGATTGTTGGCGAAATGTGCGCTCTTTCAATGAATTCTACGATCGGGTGTTTGAATTGCATCAGCATTTCCGCTATGCGGAAATTCCTAAACGTGTGGTAGTCAAACCTAAAAAATATCGCAAACGTCCGAAGCCCGTCGTTCCGCCTGTCCGTCTTAGTCGTGAGGAGATTGAACGACGTAAGGAGCAACAGAATGAATATGACGAAATTATTTTGTCGTTCTTCAAGAAATTCCCCTGTGACATTTGTAATCTACTGGTCCAGAATTTTTCGGATATGCGACGGCATCAGCGCATGTCCCACAATATCGAATCGGGCTATATCAACTGCTGTGGTCGCAAATATCATATACGAAAGGCGCTGCATGTACCGAAATCCGAGTTCAAATTTACCTGTCCCGAGTGCAATAAAAAAATTCCCACAGAGCGAAAATTGAAGGAGCATTTACGTTATATGCATGATCCAGAAACGGCCATTATATGCGATAAATGTGGCAAAACTCTACGCTCGAAAACGAATCTCAAGAAGCATCATGAGCTCGAACATTCCGATGAGCCACGTCCCAAACCGGATCCAGTGCAATGTGAGATCTGTGGAACATGGCTGCGCCATCTGTCTGGACTGAAGCAACACTTGAACACAGTGCATGAGCCACCCGGTGGCGAGCATCGTTGCCATATATGCAATAAGACATCCACCAATTCACGTGCCCTCAAGCGTCACATTTATCACAATCATTTGTGCGAAAGAAAATTCAAGTGCGGCATGTGCGAAAAGGCCTTTAAAAGACCACAGGATTTGAGGGAACACACATCGACGCACACCGGCGAGGTTTTGACATTTACACCCAACAAGATGACGCTGCTGGCACAGCAAATGCAAAAAGACCAGATGGCCAGACGAAGCTAA
- Protein Sequence
- MVACVLCLSYCSIETALGLSSVEGLRLNVRGKISKHFLFFELPQTENSSSSSLEVICQDCWRNVRSFNEFYDRVFELHQHFRYAEIPKRVVVKPKKYRKRPKPVVPPVRLSREEIERRKEQQNEYDEIILSFFKKFPCDICNLLVQNFSDMRRHQRMSHNIESGYINCCGRKYHIRKALHVPKSEFKFTCPECNKKIPTERKLKEHLRYMHDPETAIICDKCGKTLRSKTNLKKHHELEHSDEPRPKPDPVQCEICGTWLRHLSGLKQHLNTVHEPPGGEHRCHICNKTSTNSRALKRHIYHNHLCERKFKCGMCEKAFKRPQDLREHTSTHTGEVLTFTPNKMTLLAQQMQKDQMARRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555367;
- 90% Identity
- iTF_00555367;
- 80% Identity
- iTF_00555367;