Dnav001126.1
Basic Information
- Insect
- Drosophila navojoa
- Gene Symbol
- grau
- Assembly
- GCA_001654015.2
- Location
- NW:484853-487276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.8 2.2e+02 2.1 4.4 2 23 279 301 278 302 0.93 2 10 0.021 1.2 9.2 1.1 6 23 310 327 310 327 0.98 3 10 0.00012 0.0067 16.3 2.8 1 23 333 356 333 356 0.93 4 10 0.00014 0.0079 16.1 2.3 1 23 364 386 364 386 0.97 5 10 0.00018 0.011 15.7 0.5 2 23 392 414 391 414 0.96 6 10 0.12 6.9 6.8 0.0 2 23 420 441 419 441 0.95 7 10 0.46 26 5.0 4.1 2 23 450 471 449 471 0.91 8 10 8.7e-05 0.005 16.7 0.9 2 23 479 501 478 501 0.95 9 10 1.3e-05 0.00075 19.3 0.8 3 23 509 529 508 529 0.99 10 10 0.00013 0.0074 16.2 6.3 1 23 535 558 535 558 0.98
Sequence Information
- Coding Sequence
- ATGATTTGCCGTCTGTGCCTGAATAGCGCCAACGacacaattcaaatatttgaaggCGTCGGCTTGTCCCTGAATGTTGCCACAGTGCTGGCCAAATATTTCTGGTTCGAGCCAAAATGTGATGATCCCATATCGACGGACATCTGCGTGGGCTGCTGGACGCGCGTCAGcgattttaatgagttttacGCAAGTGTGGAGAAGGCGCACCGCCTGCTCACTGAAAGGTTCTCAGTGAAGGTGGGCGAGCAGTcggagagagaggagaaactCAATCCACGGAGCAACAATGGCGACCAGAAGCAGGAAGAGCAAGAGAAGCAAGAGGATTCGAAAGATTTTCTCATGCACAGCGAATGCGCTGCCGATGCCGACGTCGAAGACGATTTGGCAAATGACGAACAAATGCCAGCGGTGGAGGCTTTATATGCGAGTGGAAACGAGAGCGATGCAGCTGCATCGTTTAGCAATGAGCAGTTTCTGAACGATGTGCTGGCCCAGCAGGGAGAACCAGCTGGCGATGGCAATGGCGAAGCCGAGGCTGATGCGGCAGAAGTGCCGAGCACAGAAACAGTGCCGCAAGAACGTCGTGAAACCCGCTCCACACGCTCCAAGAGCAAAGCCCAAGTGACAGaagctgctactgctgcagcagctgctgctgctgcggctactGCAGCGGAGCAGTCGACGCCTGCGAAACGTCGTGGCCGATCGAAAGCCGAAAAAGCGAGCCCCAATGCCGTGGAGGAATCGCCGAAGAACAAACGCTATGTGGATTATAAGAAATCGATGCTGGAAATTGATGAGAAAATCGCCCAACATATGCGCCTCACCTGCAGCATTTGCCACGAGGGCCAGGAGACATTCCTGACGCTCTGCAAGCACATGATGATGGTGCATCATCGCAAGGGCTATGCCGTCTGCTGCAACAAGAAGTTCTACAAACGTTCCTTTCTCACCGATCACATCGATCGCCACTCAAATCCCGAGAAATTCAAATGCGAGCTGTGCGATCGCACCTTTGCGGATAAACAATGTCTGCGCAATCACGAGCTGCTGAAGCACCAGCCGGACGAGCAAAAGAAATTCATGTGCGAGCACTGTCCGAAGCGCTATACGAAGCAGTATTTGCTGGATCAGCATAGGATCATACACAAGGAGCGCAACGTGCCATGCGACATATGCGAGAGGCGTTTCCCCAACATGTCGATGCTGTGCACCCACGTCAAGATGGTTCACGGCAACTATGGCATCATGTGCGACATTTGCGCCCAGGTCATTCGCGGTCGTGCCGCCTTTCAGCGGCATCAGCTGGAGCATGCTGGCATCACGGAGCCGAAGGTGCAGTGCGACATCTGTGGCTCGTGGCACAAGAATAAGTATAGCCTAAAGAAACATGTGCGCCGGCACAACGGCTCCTCGGAGGAATGCACCTGCAACATTTGCGGCAAGGTCTCGCCCAATCGCAGCGCCATGCTCAGCCATCAGCGCTATGTGCACAATGCGGATCGTGTGCATGGCTGCAGCGTGTGCAAGAAGAAATTCAAGAAGGCCATCAATCTCAAGGAGCACATGGCCACGCACACGGGCGAGGTGCTCTACAAGTGTCCGCATTGCCCCAAGACCTTCAATTCGAATGCGAACAAGCATTCGCATCGCAAGAAGAGCCATCCCAAGGAGTTTGAGGAGGCGCGCAAAGCGCGCATACAAAATCGCATGGGCGACACGGCAAAGAGTCAGACGACGAGCATGATAACCATAACGACGGACGCCAGCGATGGCCAGCTGGAGACGCACAATATACTGGTGACAACCACCTCGTCACAGCCAgcggacgaggacgaggactaCAAGGGCGAGGACATTGAGTACATGCTCACCCTGAGTCCACAGCCAGCGGAGTAA
- Protein Sequence
- MICRLCLNSANDTIQIFEGVGLSLNVATVLAKYFWFEPKCDDPISTDICVGCWTRVSDFNEFYASVEKAHRLLTERFSVKVGEQSEREEKLNPRSNNGDQKQEEQEKQEDSKDFLMHSECAADADVEDDLANDEQMPAVEALYASGNESDAAASFSNEQFLNDVLAQQGEPAGDGNGEAEADAAEVPSTETVPQERRETRSTRSKSKAQVTEAATAAAAAAAAATAAEQSTPAKRRGRSKAEKASPNAVEESPKNKRYVDYKKSMLEIDEKIAQHMRLTCSICHEGQETFLTLCKHMMMVHHRKGYAVCCNKKFYKRSFLTDHIDRHSNPEKFKCELCDRTFADKQCLRNHELLKHQPDEQKKFMCEHCPKRYTKQYLLDQHRIIHKERNVPCDICERRFPNMSMLCTHVKMVHGNYGIMCDICAQVIRGRAAFQRHQLEHAGITEPKVQCDICGSWHKNKYSLKKHVRRHNGSSEECTCNICGKVSPNRSAMLSHQRYVHNADRVHGCSVCKKKFKKAINLKEHMATHTGEVLYKCPHCPKTFNSNANKHSHRKKSHPKEFEEARKARIQNRMGDTAKSQTTSMITITTDASDGQLETHNILVTTTSSQPADEDEDYKGEDIEYMLTLSPQPAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00599815;
- 90% Identity
- iTF_00479711;
- 80% Identity
- -