Basic Information

Insect: Drosophila navojoa
Gene Symbol: br
Assembly: GCA_001654015.2
Location: NW:420298-479011[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.4e-11 4.9e-08 32.0 0.0 1 40 700 740 700 743 0.90

2 4 4e-14 8.2e-11 40.9 0.1 2 39 755 792 754 795 0.94

3 4 9.3e-18 1.9e-14 52.5 0.0 1 45 809 854 809 854 0.98

4 4 9.5e-20 1.9e-16 58.9 0.0 1 43 861 904 861 905 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.4e-11	4.9e-08	32.0	0.0	1	40	700	740	700	743	0.90
2	4	4e-14	8.2e-11	40.9	0.1	2	39	755	792	754	795	0.94
3	4	9.3e-18	1.9e-14	52.5	0.0	1	45	809	854	809	854	0.98
4	4	9.5e-20	1.9e-16	58.9	0.0	1	43	861	904	861	905	0.97

Sequence Information

Coding Sequence: atggCCGCCGTGCGGGGACATCAATACTTTAGTCTGCGCTGGAATAACTATCAGAACACGATGACGTCAGTGTTTCAGCAGCTGCGCGAGGATCTCTCCTTTGTCGATGTGACCTTGTCCTGTGAGCATGGCTCGCTTAAGGCCCACAAGGTCGTCTTATCCGCCTGCTCAACGTATTTCCAAAAGCTGCTGCTCGAGAATCCGTGCAAGCATCCAACGATTATATTACCCGCCGACATCATATTCACAGACCTAAAGACAATTATCGATTTTGTTTATCGCGGCGAAATCGATGTTACCGAATCGGACTTACAGGGTCTGTTGCGCACCGCGgagcaattgaaaatcaaaggACTGTGCGAGCCGGCCGAGAATGCGGACGATTTGAATGACGCTGCATCGGCGATAATCACTGTATCGGAGAACATACAGCAGGCGGTCGTTGGCAATATTGTGAATGCGAGTCTAGTGTCTGGTGCTCCGTCGCCCacactcgagcagcagcagcagcagcaacatcatcagcaacagcagcagcagcagcaacagcagcaacagcaggagcaccagcagcagcagcaattggtGAATAGTGCGCTGCTGGCCCAGCATACGCTTGCAACCAGCAGTGGCATACAGTTGGCGGCAGGGCAACAGCTGTTGAGCAATACAGCTGGTGGcggtaacagcagcagcagcagcagcactagcctgcaacagttgcagcagcagcaacagcaacagcaacagttgcagccaACGCCGCGTAAATCGCGACTGCGTAAACGCTCCAAATCGCCAGATTTACAATTGCAAACACaatcgcaacagcagcagcagcagcaacaacagcagcaacaacagcagcagcagcagcagcaacatcatcatcatccacaAACGATACTCATCCAGGGACAGAATCAAACATCGATCGTGAGTCTGCAGCAAACGGCCGACGGCAATTATATACCAGTTGCAACAACTGGCGACGACTCCGATTGCGATAATAAGCCGCAAAAGATCTGCAAGACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGACACACGCGATCTATCAAaTCCCACCGAACAGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCACCATCATGCCACCGGGGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAGAGCGAGGTAATCGAGGCCAAGCATCTGGCTCATgtgcaggcgcagcagcagcagcagcaacagcagcagcaacagcaacagcaacagcagcagcagcagcaacaacagcagcagcaacagcagcagcagcaacatgcagcacatcatcatcagcatttgCACGCTCAGCAATTGTTGGCGcaaagtcagcagcagcagcagcagcaacagcagcaacagcagcagcaacagcaacaccaacagcagcagcagcaggcggcggtGCATGCAGCACAGCATGCAGCGCATGCCACGCATGCGGATATTGGTGGTGCCACAGTCATGGAGATTGATCCGAGCCAGATCAAGCACGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGacatgTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCGCCGGTGGTgttggcggtggtggtggtggtggtggtggcggcattggtggtggtggtgttaaTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGACCCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGTGGCACCAAATCGTGGAACGAGGACGCCCTACAGAATGCCTTGGAGGCATTGCGTTCGGGTCAAATATCGGCTAATAAAGCATCGAAAGCGTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGTGAGGGCATTCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACATGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCTGTACAGAAAGCAAGTGCCGAATTCGGTATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCTATGAACGAGGCATTGAACTCGGTGCGCGTCGGTCAGATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACGAGTGGCATCTCGATTAACAACACGTCCGGCAATACGACCGGCAGCATTGAGATTATCGAACATAGTCAGGAGAATTCGTTGCATATGTTGCAGCATCAGTTCCCGTACAGTCCGTCGCCGCATGCGCAGACGCCGCAGCATCATGGAACGCCGCAGCATCATGGCACGCCGCTGCATCACAGTACGCCGCATCACAGTTCGCAGCAGGGACCGCCGACGCCGCAGGGCATGCAACAGCATGTGGTGCATATGCAACAGTCGCCGCATCAGgcgcatcatcagcaacagcagcagcagcacatgcAACAGGATGTCGTCACATCGAGCAGCCAGGTGGTgcacagccaacagcagcaacagcagcagcagcagcaacaacaacagcagcagcagcagcagttgcagcagatCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
Protein Sequence: MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESDLQGLLRTAEQLKIKGLCEPAENADDLNDAASAIITVSENIQQAVVGNIVNASLVSGAPSPTLEQQQQQQHHQQQQQQQQQQQQQEHQQQQQLVNSALLAQHTLATSSGIQLAAGQQLLSNTAGGGNSSSSSSTSLQQLQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLQTQSQQQQQQQQQQQQQQQQQQQHHHHPQTILIQGQNQTSIVSLQQTADGNYIPVATTGDDSDCDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEQLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAAHHHQHLHAQQLLAQSQQQQQQQQQQQQQQQQHQQQQQQAAVHAAQHAAHATHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGGGGGGIGGGGVNAGEKGQFNGPKAWTQDDMNSALDALKTQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISINNTSGNTTGSIEIIEHSQENSLHMLQHQFPYSPSPHAQTPQHHGTPQHHGTPLHHSTPHHSSQQGPPTPQGMQQHVVHMQQSPHQAHHQQQQQQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00512640;
90% Identity: iTF_00479563;
80% Identity: iTF_00554466;