Dnas011931.1
Basic Information
- Insect
- Drosophila nasuta
- Gene Symbol
- PZF1
- Assembly
- GCA_017165715.1
- Location
- Scf:1-9894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.049 3.1 8.1 0.3 3 23 294 315 293 315 0.91 2 10 0.00019 0.012 15.6 0.3 6 23 324 341 324 341 0.99 3 10 7.5e-06 0.00047 20.1 0.3 1 23 347 370 347 370 0.98 4 10 0.00031 0.02 15.0 1.0 1 23 382 404 382 404 0.98 5 10 2.1e-05 0.0013 18.7 3.0 1 23 411 434 411 434 0.96 6 10 1e-05 0.00066 19.6 1.8 1 23 440 462 440 462 0.96 7 10 0.045 2.9 8.2 0.5 2 23 471 492 470 492 0.96 8 10 8.9e-05 0.0056 16.7 2.1 2 23 498 520 497 520 0.95 9 10 1.6e-07 1e-05 25.3 0.7 2 23 527 548 526 548 0.97 10 10 0.00016 0.01 15.9 4.4 1 23 554 577 554 577 0.96
Sequence Information
- Coding Sequence
- ATGATCTGTCGCTTGTGTTTAAAAAACATAAACGCAAACAATGCCGTCTATTTGTTCGAAACGGACGACACGCTGGCCGAATCATCGCTGCTGAAAATGATTGCCAAGTTTCTGCAGCTCGAAATAATGCCGGATGACAACATATCAACGAATATATGTCACGACTGTTGCGAGCATCTGGAGGATTTCAACAATTTCTGGCAGCTCGTCGAACAAAAACAGGCAACACTCAAAAAGGAATTCCTTAATGTGGACGTGGATTGTGTGGCCATGAAATGGACTGGCGGCATCGATGTGGATGTTAGCATCGATGAGCTGCCGTTGGTCGCCGCCGATGAGATGGACGAGAAGCCATTGGACATCCACAATCTCAGTCTATTAGGTAGTGTGCTCGATGTGAATGTAGACAGCGTTGAGGTACCCCAAATCTCGACGAGAAGTGCCAAGCAGCAGCAGACGCTGGATTACGATGAGAAGCCGTCGCTACTGCTGGCTGATGACGGCAGCGCTTCCTCCTCCCCCTCTTCCTCTTCCTCATCCGCTGCGTCTGATGAAGATGATGAAGTACCGCTCGTGAAGCTGCAGCATAAACTAAAGCCCAAGCGTAAAGTGCGCGTCACACGTCGCCGCAAGTCACGCAATCTCACCTTAGCCCAGGAACTCGATCAGCTGCTCGAACAGAGCAACAACAACAATGAAGTCGGTGCGCCAAACAAAGTGAGACGCAGCAAGAAAGTGTTGCCGAGCAGCGCTGACACGCCGACGGATACGCAAAAGCATGAGCTGGAAGCGGTACTGGAGCGTCGTCCCAAGGGCTGTTCACGTGCCCAGCTATCGAAGCGCTACGAGGAGGCGATCGCCAGTTATATGAGCGCCGACTGTGATCTGTGCGATTTCAGTGCCAAGTATCTGTCGCAGCTGAAGACGCATTTTCTCGAGGTGCATCAGCAGGATGCGTATCTCAAGTGCTGCAACAAGATCTTCAATCGACCGTCCAAGCTTATGGATCACATTCGCAAACATATTAATCCCAAGCTCTTCACCTGCTCGATTTGCAACAAGTCGCTGAACTCGCAGGATTATCTTGCCACACACATCGAGACGGTGCACAACAAAGTGGCCCAAATTGGCAAGGTTCTCAAGTTTCCGTGCGCCAAATGCGAGCGTACATTTAGCAGCGAACGTCGGCTATCCAATCATCTGCTCAAGCACGACACTGATCAGCTGGAGCACAGTTGCCAGATCTGCGACAAGAGCTTTGCCAATGTGCATCGCTTGCGTCGACACATTCAGTCCATACACGAGGATCTGCATCCGCATGTCTGCGACATTTGTGGCAAAAAGTTTAAATTCAAACCCTCCTTCGAACGCCATCTGCTCGAGCATCAAGGCGTCGTTGCCCCCGCCATGGAGTGCCCAATTTGCGGGGTCTGGCTGAAGAACGAGCACAGCCTGCGATTGCATCGCTTCACACACGACAGCACGGATACCGTGTGTCCGCATTGCGCCAAGACGTGCAGCAGTCGCACAGCGTTGCGAGCACACATCAAGTACGCGCATAAGCTGACCACGAATCTGCAGTGCACGTATTGCGAGAAGAGCTTCAAGCAGCAGCGCAATCTGGAGGAGCATATGGCCATACATACGGGTCTCCAGCTCTACAATTGTCCGCACTGCCCAAAGGAGTGTCGCTCGAGGAGCAACATGTATGTGCACATCAAGCAGCGGCATGCGGATGAATGGCTGAAAGCGAAGATGGCGCGTTCGCATAATCCGCAGTACAAGCCGCATGATTAA
- Protein Sequence
- MICRLCLKNINANNAVYLFETDDTLAESSLLKMIAKFLQLEIMPDDNISTNICHDCCEHLEDFNNFWQLVEQKQATLKKEFLNVDVDCVAMKWTGGIDVDVSIDELPLVAADEMDEKPLDIHNLSLLGSVLDVNVDSVEVPQISTRSAKQQQTLDYDEKPSLLLADDGSASSSPSSSSSSAASDEDDEVPLVKLQHKLKPKRKVRVTRRRKSRNLTLAQELDQLLEQSNNNNEVGAPNKVRRSKKVLPSSADTPTDTQKHELEAVLERRPKGCSRAQLSKRYEEAIASYMSADCDLCDFSAKYLSQLKTHFLEVHQQDAYLKCCNKIFNRPSKLMDHIRKHINPKLFTCSICNKSLNSQDYLATHIETVHNKVAQIGKVLKFPCAKCERTFSSERRLSNHLLKHDTDQLEHSCQICDKSFANVHRLRRHIQSIHEDLHPHVCDICGKKFKFKPSFERHLLEHQGVVAPAMECPICGVWLKNEHSLRLHRFTHDSTDTVCPHCAKTCSSRTALRAHIKYAHKLTTNLQCTYCEKSFKQQRNLEEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQRHADEWLKAKMARSHNPQYKPHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00601987;
- 90% Identity
- iTF_00589686;
- 80% Identity
- iTF_00556659; iTF_00472504;