Basic Information

Gene Symbol
stc
Assembly
GCA_037043605.1
Location
JBAMBF010000296.1:1277650-1281766[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.4 1.2e+04 -3.6 0.5 15 18 356 359 355 360 0.79
2 14 2 1.7e+04 -4.1 1.6 15 19 383 387 382 387 0.81
3 14 0.015 1.3e+02 2.7 2.5 4 11 416 423 415 424 0.91
4 14 5.8e-07 0.0049 16.8 15.1 1 19 428 445 428 445 0.93
5 14 2.4e-07 0.0021 18.0 10.0 1 18 481 498 481 499 0.96
6 14 2 1.7e+04 -6.3 3.9 7 13 503 509 503 510 0.74
7 14 5.8e-09 5e-05 23.2 12.5 1 19 539 557 539 557 0.98
8 14 3.4e-05 0.29 11.1 16.3 4 19 605 620 598 620 0.87
9 14 0.065 5.5e+02 0.6 11.7 1 11 660 670 660 682 0.79
10 14 4.7e-10 4e-06 26.7 15.5 1 18 687 704 687 705 0.97
11 14 1.4 1.2e+04 -3.6 1.5 6 10 734 738 733 739 0.61
12 14 2 1.7e+04 -6.5 8.7 10 18 752 761 741 762 0.76
13 14 2.7e-08 0.00023 21.0 12.6 1 16 798 813 798 821 0.95
14 14 8.2e-08 0.00069 19.5 13.0 1 19 831 850 831 850 0.96

Sequence Information

Coding Sequence
ATGGCCGAAtattggcaacagcagcaacaacaacagccgccgccaacgcagcaacagcagctaacAAATGGAGTAGCACCTCATAATGACTcagtcgctgctgcttctaTCGCAGCCGGTACCTCCGCCGCTGCTTCTATCGCAGCCGGTACCTCCGCCGCTGCCTGCAACGGGCagagcaccaacaacaacaactatgtTAACTTCAATCAGTTCATCTCGCAGCATAATTTACACAGCTCCAATCTCGGGTatagcagcggcggcggcggtgccTTCGGTTTGACGCCGGccagctgcagcggcagcgcTGCCAACAACTCCTCAAGCTTCGGCGTCAGCCAATATGCGGCACCTAATTTTGGCTATCAAAATGGCGATGGGGTTGGCCAACATAATTCCAATTTGTCCTCCACCTTTGGCAGTAACCCATTTGCTGCGCCTGCTGCCGGCGGAGCCGCTTTCGATTTTAGCACTTCCAAGCTGCAGGCAACGGCACCCGAATTTGTGCCCAGCTTCGCCAAGCTCAGCCTGTCGACGAGcaaagccaacagcagcagcaacaatagcaataataacaataatagcaacaacagcaacactgcCACAACCCAGCACACGCCACATgaggcagccagcagcaatgCTCAACGAGGCTTGACAAAGCCGCTCGCTGGCAGCAACAATACTCGCCAGCAACAACGGCGCCAGGACTATCGCGAGGATCGCCATGATGATCGGTATGAGCGTGGCAAAAAGccgcagaagcagcagcgctACGACAATCATCGCAGCAACAAAAGACGCGACGACTGGAATCGCAATCGTGATCGCATCAACGGCTATCCGCGCGCCGCCGACGAACtggacaacagcaacgacagcgCCCAGCCCTCGCCTGAGAAGCAGCCCGATAAACAGCTGCAACACCAAGTCTCCCCTCGCCGTGCGCCCGACAATGAAAAGCTGTCGCAGCGGGAGAAGCTAATGCGCGACATTGAGCAGCGGAGACTTGAGTGCTTGGTGTGCGTGGAGCAGATTAAGGCCCATCATGGCACGTGGTCGTGCCAGAACTGCTATCATGTGCTGCATCTCAAGTGCACCGTCACCTGGGCGAGCAGTTCCAAGTCGGCGGAGGGCTGGCGTTGTCCAGCCTGCCAGAATGTGCTGCAAGAGTTGCCGCGCGAGTATCTCTGCTTCTGTGGCAAGCTAAGGAATCCGCCACTCACACGCAACGAGCTGGCGCACACTTGCGGAGAACTCTGCTGCCGCGTCGAGGGCTGCAGTCATGCGTGCACCCTGCTCTGTCATCCGGGTCCGTGTCCGCCGTGCCAGGCGAATGTGTTGCGCAGCTGTGGCTGCGGACGCACCTCCAAGCTGATGCAGTGCGCCATgaagcagcagttgcagtgcGAGGCCGCTTGCGACAAGCCACTCAACTGCGCCGAGCATCGTTGCGTGCAGCTGTGCCATGCGGGCAAATGTGAGCCGTGTGTGGATCAGGTGGAGCAACACTGCCACTGTGGTAAGCAGCAGCGCGAGGTGCTCTGCACCAAGGAGAGTCAGGACAAGCGCAGCTACTCGTGCAAGGAGTGCTGTGGCAGGCCGTTGCCCTGCGGCAATCACAAGTGCAGGGATTCGTGTCACGCCGGCGCATGTCGTCCCTGCAAGCTGAGTCCGCAGCAGATCACTAGTTGCCCTTGTGGCAAGTTGGCTGTGCCTCCGACGCAGCGTAGTAGCTGCTTGGATCCGGTGCCCACGTGCGAGGGCGCGTGTAGCAAGACGCTGCGCTGTGGCAAGCCGGCGCATCCTCATCAGTGTGCCAGCAAATGCCATTTGGGGCAGTGTCCGCCATGCCAAAAGCAGACGGCCGTCAAATGCCGTTGCGGCCACATGGATCAGCTGATCAAGTGCCGCCAGCTATCTACCCGGGCGGACGATGCGCGCTGCAAACGTCGTTGCACAAAGAAACGCAGCTGTGGCAAGCACAAATGCAATGCTGAATGTTGCATCGACATCGACCACGCCTGCCCACTGCCCTGCAACCGAACGCTGAGCTGCGGCAAGCATAAGTGCGATCAGCCCTGCCATCGCGGTAATTGTCCACCCTGCTATCGCAGTAGCTTCGAGGAGCTCTACTGCGAATGCGGCGCCGAAGTGATCTACCCACCGGTGCCTTGTGGCACAAAGCGGCCGCCCTGCAAGCGGCCCTGTTCGCGCACCCACGGCTGCGAGCATGTGCCGCAGCACAATTGCCATGCGGCGGCCACCTGTCCGCCCTGCATGATGTTCACCACGAAGTGGTGCCACGGTAATCACGAGCAGCGCAAGACAATACCCTGCTCGCAGGCTAGCTTTAGCTGTGGCTTTCCATGCGCGAAGCAGCTCGCTTGTGGCCGCCATAAGTGCATCCGGCCTTGCCACGAGGGCGAGTGTCCACAGCAGCCGGGCGAGCTGTGCCGCCAAAGCTGCACCAAGCCGCGTCTGCTGTGCGGCCACAAGTGTTCCGCTGTCTGCCACGATGGCGCCTGCCCCGAGACGCCCTGCAAGGAGCTCGTCGAGGTGCAGTGCGAGTGCGGCAATCGCAAGCAGAACCGCAGCTGCCAGGAACTTGCCCGGGAGCACAGTCGCATTGCCACTGCCCAGCTGGCCTCCTCCATGGCGGAAATGTCGCGCGGCAACTACATGGAGCTCAGCGAAATACTCGCAcccaccaaaaacaacaaatccaATAAAACCTTGGACTGCAATGAGGAGTGTCGTCTGCTGGAGCGCAATCGCCGCTTGGCCATTGGACTGCAGTCTCGGAATCCGGAGTCGCAGCTCAAGACGCTGACGAAGTACTCGGAATTCATGCGCGGTTTTGCCAAACGCAATCCGGTGCTAACTAAGAGCGTCTACGAAACGCTCAGTGATCTGGTCAAGCTGGCTAAGGAGAGCAAGCAAAAGTCACGCAGTCACTCGTTCCCCACGATGAATCGCGAGAAGCGTCAAATGGTGCACGAACTGTGCGAAGTGTTTGGCCTGGAGTCTGTCTCCTATGACAAGGAGCCCAATCGCAACGTGGTCGCCACCGCGCACAAGGAACGCtgCTGGTTGCCCGCCACTAGCGTCATGGAGGTTCTGGCCCGCGAGTCCGGTCAGCGTCGCGTCCCGGTGCCCAGCAACAATGCCTGGGGCCTCAAGAAGTAG
Protein Sequence
MAEYWQQQQQQQPPPTQQQQLTNGVAPHNDSVAAASIAAGTSAAASIAAGTSAAACNGQSTNNNNYVNFNQFISQHNLHSSNLGYSSGGGGAFGLTPASCSGSAANNSSSFGVSQYAAPNFGYQNGDGVGQHNSNLSSTFGSNPFAAPAAGGAAFDFSTSKLQATAPEFVPSFAKLSLSTSKANSSSNNSNNNNNSNNSNTATTQHTPHEAASSNAQRGLTKPLAGSNNTRQQQRRQDYREDRHDDRYERGKKPQKQQRYDNHRSNKRRDDWNRNRDRINGYPRAADELDNSNDSAQPSPEKQPDKQLQHQVSPRRAPDNEKLSQREKLMRDIEQRRLECLVCVEQIKAHHGTWSCQNCYHVLHLKCTVTWASSSKSAEGWRCPACQNVLQELPREYLCFCGKLRNPPLTRNELAHTCGELCCRVEGCSHACTLLCHPGPCPPCQANVLRSCGCGRTSKLMQCAMKQQLQCEAACDKPLNCAEHRCVQLCHAGKCEPCVDQVEQHCHCGKQQREVLCTKESQDKRSYSCKECCGRPLPCGNHKCRDSCHAGACRPCKLSPQQITSCPCGKLAVPPTQRSSCLDPVPTCEGACSKTLRCGKPAHPHQCASKCHLGQCPPCQKQTAVKCRCGHMDQLIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCKRPCSRTHGCEHVPQHNCHAAATCPPCMMFTTKWCHGNHEQRKTIPCSQASFSCGFPCAKQLACGRHKCIRPCHEGECPQQPGELCRQSCTKPRLLCGHKCSAVCHDGACPETPCKELVEVQCECGNRKQNRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPTKNNKSNKTLDCNEECRLLERNRRLAIGLQSRNPESQLKTLTKYSEFMRGFAKRNPVLTKSVYETLSDLVKLAKESKQKSRSHSFPTMNREKRQMVHELCEVFGLESVSYDKEPNRNVVATAHKERCWLPATSVMEVLARESGQRRVPVPSNNAWGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00496269;
90% Identity
iTF_00607498;
80% Identity
-