Basic Information

Gene Symbol
ct
Assembly
GCA_037043605.1
Location
JBAMBF010000116.1:671823-706180[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.6e-26 9.1e-23 80.0 0.0 3 71 1170 1239 1168 1245 0.94
2 3 1.1e-31 6.1e-28 96.6 0.0 3 77 1656 1731 1654 1733 0.96
3 3 6.5e-31 3.7e-27 94.1 0.0 3 76 1952 2026 1950 2029 0.96

Sequence Information

Coding Sequence
ATGCGCCTGACAAAGGGGTGTGCGGGGcgcgCTACACTCGCTGAGAAGGAAGTGAACACACTCAAGGAACAACTATCcacaggcagcaacagcgataacagcaacagcgacaacaacagcaatacagcagcagcagcagcaacagcagcagcagcagcagcagcagcggcagcggcattggcattggccagCGGCGAAGAGGCGGAGGCCACCGGGAATTGTGAAAGTGAGAGCGACAAGCTGCTGAATAGCTCGATTGTTGCAGCGGCCATAACGCTGCAACAGAACGGCGGCAATCTGCTAGCCAACACAAATACACCGTCGCCATCGCCGCCGTTGCTGAGcgccgagcagcagcaacagttgcagagCAGCCTGCAGAACGGCGTCGGCGGCGCCTGTTTAAATCCGAAGCTCTTCTTTAATCACGCACAGCAAATGATGATGgaagcggcagcggcggcggcggcagcggcagcagctgcagcggcagcacaacagcaacagcaacagtcgccAATGCATTCGCccattgccactgccacaaacAATacgcaagcagcagcagcagcagcagcagcagcaactgcaacaacaacagcaggcgtAACACAGCAGCAATCAGCACGCGATCTTgctgaggcagcagcagcagcaacagcagcagcaagtagcAATTGCAACGACGATGACAATGAGGACGATGACGAGGAGGATGCATCGATGCAATCAAATGTGGCGCATGCCGATGGTGAtctggatgatgatgatatggAGTTGGAGGCGGAGCATGTTGCTGATGGGGGCAGTGTTGCTGCCGCTAAGTCATTGGCAAGAACTGATAGCATTGGCGATGTCGATGCGAATGCAACACATAATCTTGATGATGCACATCATCgtaatgatgatgttgatgatgatgatgatgatgatgatgatgttgccgAAGTGGCTACCGATGAGCACGAGGATGATGAGGAGGCTAGTATAAATATTAGCaataatcacaacaacaacaacaacaacaacagcaacaatactGATAGAAACAATAGCTGTAGTcgaaagagcaacaacagtgaagcgcaacatgttgcactgcgtgataataataatgtaaatgaGCAACATGTGGCACATAGCGCTGAGGATGATGAttgcgccaacaacaacactaacaacaccaacaacaataacaacaacaacaacaacaacaacaacagcagcagcaacgagaaGCGCAAAAAGCGCAatgcaagcaacaacaacaacaataacaacaacaacaacaatcagcccGCTGTTCTATTAGCTGCCAAAGACAAAGAGGTAAGCAATCCATATGCATCGCTCGCAAGCattaAAGCACTTTTGGATGAGTTGCAACGGCTGCGTGGCCTGGAACAAACTCATCTTGTACAAATCCAGAGGCTCGAAGAGCATTTGGAGGTAAAAAGACAGCACATAATGCGATTGGAGGCACGTTTGGATAAGCAGCAGATAAATGAGGCACTTGCCGAGGCAACTGCATTGGCTGCCGCACTCAATGCGGCTGCGACCAACaataacaccaacaataataacaacaacagcagcagcaacaacaacaatcacagcaACCAGAGCAGCGAAAACAACAATGACGAGTTGACAACAGATCTAACATCATCCACCCATCAGCACATgaacgatgatgacgacgacgacgatgatgatgatgatgataatgataatcaCGCTGAGCTGCTGCGGGAtggcaatgatgatgatgaggaggacACGGATATGGCTaacgaacagcagcagcagcagcagcaacatgctgCCATTGCCAACAATCGGCACAACGATCATAACGAAAAGGACGATGAGGACGAGGAGCAGGATGCCGATCTATCcaatgccacagccacagcggACGGCAATGAGCTGCAAATCAAAAAGGAACAGCACAGTCCACTGGATCTGAATGTGCTCAGTCCACATTCAGCTATTGCCACTGCCGCCGCGgccgcagcagccgctgccTGCGCCAACGATCCGAACAAATTCCAAGCTCTGCTCCTGGAACGCACCAAAGCTTTGGCCGCTGAGGCGCTCAAGAATGGCGCCAGCGATGCGGCGAATGCCAGCTGTGATGAAATgccgcaacaacaagcagcagacgcagcaaCTACCGCTAATCAAGTAACAGTAACACCAGCTGATGAAGatgaaaatgaagaagaagaagatgaagaagaagaagcagcagcagcagccacatccAAGCcagaaacaataataaacgcAATGGAAAAGCCCGAAAATGATCCAATGACCGAGGCCAACTTGCAGCCCAAAATTGAGATCATTGACACAGAAACTGATGCTGATCCTGATGCTGATCCTGATGCAGATGAGGTCGGCACTGAGATTGCCTCTGGTCAAACACTGGAAGAGCAGCTGGTCAATAGCTATTGGAGGCGCGGCTTTGAAacctcaacaacagcagcagcaacgacaacagcagcagcagcagcaacaaccactgGAAGCAAAACGCcaacaatttatcaaaatgcCAATGTggtgcagcaacaactgttgccgccaccgccgccgccgccgccgctgccgccgtcacaacagcagcagcagcagcacttttctgcacagcaacaacaacaatatcaccaacagcaacaacaacaacaacaacaacaacagcagcagcaacatggaCCCTCGTCCACAGTGCTACTCAGTCAATTGGTTAACTCAACTTTCTTACATGCCAATCATTCCTCTTGTTCCAATTCCAAATCCACACGCCTAGATGCCGCAtcccaccaccaacaccagcagcatcagacacagcagcagcagcagcagcagctgctccagcagcagcagcagcagcatcatcaccacaacagcagcaatagcagcaacagcagttcaGCGGGCGGCAGCGATCCACTGaatccacatcatcatcatgcgCACCACCATGGCCATCCACATGGACAgctgttgcatgcagcacATCATCTGCATCATGGCGCCGACTCGAACTCATCCAGCGCCAATAGCACACCCAACAGCACCGCCCATCTGGCGGCCACAATTGCCAGCACGCTGAATGGCAACAAGTCGCTGTTGCAGGCAGCGGCCGCTGCCAATGTGGCAGCCGTTGCGGAGGATAATAACAACAGTTTGACGCCAAATGCGAATGCGGCTGTGGCCGCTGCAGCAATGGCTGCCCATGCCCAGCATGCGGCCGCTTTGGGTGCACCCGGTTTTCTGCCAAATTTACCCAGCCTGCCGGCGTTTCAATTTGCAGCGGCCGCTGCGGCTGGCCAGGATCCGCGAGCGCAACATTTTCGGTTTGCGGATGCCGAACTGCAGATGCAGCCGGGCGTTTCGATGGCCGGCCGATTGGGTGAATCGCTAATACCCAAAGGTGATCCCATGGAGGCCAAATTGCAGGAGATGTTGCGCTACAACATGGACAAGTATGCCAACCAAGCACTCGACACGCTACACATCTCCCGACGCGTCCGCGAATTGCTCTCCGTGCACAATATTGGCCAGCGGCTGTTTGCCAAGTATATTTTGGGCCTGTCGCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCAAAGCCCTGGGATAAGCTAACCGAGAAGGGTCGCGACAGTTACCGCAAGATGCACGCCTGGGCCTGTGATGATAGTGCCGTCATGCTCCTCAAGTCCCTCATCCCCAAGAAAGATTCGGGATTGCCACAGTATGCTGGTCGCGGCGCTGGTGGCGATGATTCCATGTCTGAGGATCGCCTCGCGCACATACTGAGCGAGGCCTCGTCCCTGATGAAGAGCagcgccgtcgccgtcgccgcccagcagcaggagcatcAGCGTCGCCATGTCGTCGATGATACGCACAGCAATGAGGATAGCAAATCGCCGCCGCAGAGCTGCAGCTCGCCGTTCTACAAGGAGCAGCAGATAAAGCAtttgcagccgcagcagcagcagcagctgcagcatgcCACAGAGCATGCACAGCGCGAACAGCGGGAAGCGGCCGCCGCCGTTGTTGCCGTgcaccagcatcagcagcagcagcagcagcgggagcagcGGGAGCAGCGAGAGGCCGCTCAgcgggagcaacagcagcgcattCGCCACGATGAACTGGGGCCGGACAAGATGGCGCGTCTCTATCAGGAGCTAATGACGCGCACTCCACGCGAAGCAGCCTTCCCAGGCTTTTTGTTGACACCGTTCTTTGGCGGAGCCGCCGGCATGCCTGGAGCACCCGCCAATCCGTTTCCCACAGCGATGGCCGCCGACGAGAATATGCGACATGTGCTGGAACGGGAGATCGccaagctgcaacagcagcaggcacagcaGGCGCAGCAGGCAGCCAGCTTCCCCAACTTCTCCAGTTTGAtggcactgcagcagcaggtgctGAACGGTGCACAGGATCTGTCGCTGGCCAGCAAGGAGATCAAGTTGAATGGACAGCGCTCCTCGCTGGAGCAGCACagtggcggcagcagcagctgctccaagGATGGCGAACGTGGCGATGACAACGACAGAAGCTATCCAGCCCTGTCGCATGCTGCACGCAAATCGGAGGGCGGCAACACACCCGCACCACCCGCACCAACACTAACACAAACGTCGGcgggcagcggcagcaattcGAATGCGGCCAACTCAACAGTTGCCAGCGGACATGGCAGCAACTCGGCGGCACCCAGTCCGCTGAGCAACTCAATATTGCCGCCGGCGCTGAGCAATCAGGGTGAGGAGTTTGCGGCGACGGCGAGTCCATTGCAGCGCATGGCATCGATAACCAACTCGCTGATCACACAGCCGCCAGTGACGCCGCATCATTCGCAGCCGCAGCGACCCACCAAGGCGGTGCTGCCACCGATCACCCAGCAACAGTTCGACATGTTCAACAATCTCAACACGGAGGACATTGTGAGGCGGGTGAAGGAGGCGCTCTCCCAGTACAGCATCTCGCAGCGTTTGTTTGGTGAGTCTGTGCTGGGGCTGTCGCAGGGTTCCGTTTCCGATTTGTTGGCTCGCCCCAAGCCGTGGCACATGCTCACCCAGAAGGGTCGCGAGCCGTTCATACGCATGAAGATGTTCCTCGAGGATGACAATGCGGTGCACAAGCTGGTGGCCAGCCAGTATAAGATTGCGCCGGAGAAACTGATGCGCACGGGCAGCTACAGCGGCAGTCCACAGATGCCACAGGGATTGGCCAGCAAAATGCAGGCAACGCTGCCCATGCAGAAGATGATGAACGAGCTGAAGCTGCAGGAGCCGGGGCAGGCGCAGCACATCATGCAACAGATGCAGGCAGCCGCCGCCATGTCGGCAgccatgcaacagcagcagcaggccgCTGCCGCCCAAGCTGCCGCCGTGCAGCAGGCGCAGGCGCAGGCACAGGCCCAGGCTCAGGCTCAGGCGAGCCAGCATCAGCAGgcgcagcatcagcagcaacagcatcagcaggtgcatcagcatcagcaggcgcagcagcaggcgcaggcacaggcacaggcccAGGCACAGGCGCAGTTGTTGCATCATCAGAATATGCTGCTGACGTCGCCGGGTCTGCCGCCGCAGCATGCAATCAGTCTGCCGGCAGCGGTCACGCCTAGTGGCATCCAATCGGCTGGTGGTAATCCAACAGCAGCGGGCAGCACGCCGGGCAGCAACGAGAAGAAGCCGATGATGATGCCGGTGCTGGGCGGTGCACATGCTCCAAATGCAATGCGCAGCCTGCATCAGCATATGTCGCCGACCGTCTACGAGATGGCCGCACTCACCCAGGATCTGGACACGCACGATATCACAACGAAAATCAAGGAGGCgctgctggccaacaacatTGGCCAGAAGATCTTTGGCGAGGCGGTGCTCGGCCTGTCGCAGGGCTCCGTCTCGGAGCTGCTCAGCAAACCGAAGCCGTGGCACATGCTCTCGATCAAGGGCCGTGAGCCGTTCATCCGGATGCAGCTGTGGCTGAGCGATGCCAACAATGTGGAgcgactgcagctgctgaagaACGAGCGGCGGGAGGCGAGCAAGCGGCGACGCAGCACTGGTCCCAACCAGCaggacaacagcagcgacacgTCCAGCAATGATACGAATGATTTCTATACGAGCAGCCCGGGACCGGGTTCGGTGGGTTCGTCGGTGGGCGGTGCTCCGCCCAGCAAGAAGCAGCGCGTCCTCTTCTCCGAGGAGCAAAAGGAGGCGCTGCGTTTGGCCTTTGCCCTCGATCCGTATCCGAATGTTGGCACCATTGAGTTTCTGGCCAACGAGCTCAGCCTGGCGACGCGCACCATCACCAACTGGTTCCACAATCATCGCATGCGGCTCAAGCAGCAGGTGCCACATGGCCAGCCCGGCCAGGACAATCCCATACCCAGTCGTGAGAACACAAATGCCACGCCCTTCGATCCCGTCCAGTTTCGCATACTGCTCCAGCAGCGTCTCGTCGAGCTGCACAAGGAACGCATGGGCTTGAGTGGTGCGCCCATTCCCTACCCACCGTActttgcggctgctgcactGCTCGGACGCAGCCTGGCCGGCATACCGggtgcggcggctgctgccggagcagcggcagcggcggctgctgctgtcggcGCCGCCGGCGGCGATGAGCTGCAGGCACTGAACCAAGCATTCAAGGAGCAGATGAGCGGCCTGGATCTGTCGATGCCGACGCTGAAGCGCGAGCGCAGCGACGACTATCAGGATGAGCTCGAGCTGGACGCCAGCGGACACAACATGAGCGACAACGAGTCCATCGAGGGCGGCAGCCACGAGCCGGAGCACACGCCCATCACCGAGTACGAGAAGGCGCTGCAGAAATCCGCTCTCGCCTCCGCAGCGGCCGCTGCTGCATATCTGAGCAATGCGGCGCGCAGTAGCCGTCGCAAGCCGGCGGCACCACAGTGGGTCAATCCGGCTGGTGCCAGCACACCGACGGCGGCTGGTGTTGCACCCAATAGCGCTGACACGGAGCGCATCATCAACGGCGTCTGCGTCATGCAAGGCTCCGATTTCAATCGCGATGAGAGTGACAGCATCAAAGGCGGCGTTGGCGGCGACTCCAATGCAGCCGATGCCGAGCACGATGAGCACGCTCAACTGGAGATTGAGCAGCGCTTCATGGAGCCCGAGGTGCGCATCAAGCAGGAGGAGGATGACGAGGACGAACaaatccagcagcagcagcagcaaaagcagctgctgGAAGATGCGGCAGCGCCCCTCGACAGCGATGCGGAGAAGCAGCTCAACGTGATCAGCGAGGACAAATTGCGTTTGGTGCGCGTGCGGCGCCTCAGCAGCAATGGCGATGCCGAGGAGCACTCCACAACGGCTGCCCAGCTGGCGGCGACAGTCGGTGCGCCAGTggcgccggcagcagcagcagcatcatggAACTACTAA
Protein Sequence
MRLTKGCAGRATLAEKEVNTLKEQLSTGSNSDNSNSDNNSNTAAAAATAAAAAAAAAAALALASGEEAEATGNCESESDKLLNSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSSLQNGVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAAAQQQQQQSPMHSPIATATNNTQAAAAAAAAATATTTAGVTQQQSARDLAEAAAAATAAASSNCNDDDNEDDDEEDASMQSNVAHADGDLDDDDMELEAEHVADGGSVAAAKSLARTDSIGDVDANATHNLDDAHHRNDDVDDDDDDDDDVAEVATDEHEDDEEASINISNNHNNNNNNNSNNTDRNNSCSRKSNNSEAQHVALRDNNNVNEQHVAHSAEDDDCANNNTNNTNNNNNNNNNNNNSSSNEKRKKRNASNNNNNNNNNNNQPAVLLAAKDKEVSNPYASLASIKALLDELQRLRGLEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAALNAAATNNNTNNNNNNSSSNNNNHSNQSSENNNDELTTDLTSSTHQHMNDDDDDDDDDDDDNDNHAELLRDGNDDDEEDTDMANEQQQQQQQHAAIANNRHNDHNEKDDEDEEQDADLSNATATADGNELQIKKEQHSPLDLNVLSPHSAIATAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGASDAANASCDEMPQQQAADAATTANQVTVTPADEDENEEEEDEEEEAAAAATSKPETIINAMEKPENDPMTEANLQPKIEIIDTETDADPDADPDADEVGTEIASGQTLEEQLVNSYWRRGFETSTTAAATTTAAAAATTTGSKTPTIYQNANVVQQQLLPPPPPPPPLPPSQQQQQQHFSAQQQQQYHQQQQQQQQQQQQQQHGPSSTVLLSQLVNSTFLHANHSSCSNSKSTRLDAASHHQHQQHQTQQQQQQQLLQQQQQQHHHHNSSNSSNSSSAGGSDPLNPHHHHAHHHGHPHGQLLHAAHHLHHGADSNSSSANSTPNSTAHLAATIASTLNGNKSLLQAAAAANVAAVAEDNNNSLTPNANAAVAAAAMAAHAQHAAALGAPGFLPNLPSLPAFQFAAAAAAGQDPRAQHFRFADAELQMQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDSAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSEDRLAHILSEASSLMKSSAVAVAAQQQEHQRRHVVDDTHSNEDSKSPPQSCSSPFYKEQQIKHLQPQQQQQLQHATEHAQREQREAAAAVVAVHQHQQQQQQREQREQREAAQREQQQRIRHDELGPDKMARLYQELMTRTPREAAFPGFLLTPFFGGAAGMPGAPANPFPTAMAADENMRHVLEREIAKLQQQQAQQAQQAASFPNFSSLMALQQQVLNGAQDLSLASKEIKLNGQRSSLEQHSGGSSSCSKDGERGDDNDRSYPALSHAARKSEGGNTPAPPAPTLTQTSAGSGSNSNAANSTVASGHGSNSAAPSPLSNSILPPALSNQGEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLASKMQATLPMQKMMNELKLQEPGQAQHIMQQMQAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAQAQAQAQASQHQQAQHQQQQHQQVHQHQQAQQQAQAQAQAQAQAQLLHHQNMLLTSPGLPPQHAISLPAAVTPSGIQSAGGNPTAAGSTPGSNEKKPMMMPVLGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELDASGHNMSDNESIEGGSHEPEHTPITEYEKALQKSALASAAAAAAYLSNAARSSRRKPAAPQWVNPAGASTPTAAGVAPNSADTERIINGVCVMQGSDFNRDESDSIKGGVGGDSNAADAEHDEHAQLEIEQRFMEPEVRIKQEEDDEDEQIQQQQQQKQLLEDAAAPLDSDAEKQLNVISEDKLRLVRVRRLSSNGDAEEHSTTAAQLAATVGAPVAPAAAAASWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00495757;
80% Identity
iTF_00552205;