Basic Information

Insect: Drosophila monieri
Gene Symbol: Trerf1
Assembly: GCA_035047585.1
Location: JAWNPJ010000115.1:814897-827522[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.012 0.92 10.2 1.1 2 23 337 358 336 358 0.97

2 6 3.9e-06 0.00031 21.1 1.3 1 23 364 386 364 386 0.98

3 6 0.00039 0.031 14.8 2.5 1 23 392 416 392 417 0.94

4 6 0.00065 0.052 14.1 0.8 2 23 696 717 695 717 0.97

5 6 0.0018 0.14 12.8 0.1 1 23 1834 1858 1834 1858 0.97

6 6 8.8e-05 0.007 16.9 0.8 1 23 1989 2011 1989 2011 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.012	0.92	10.2	1.1	2	23	337	358	336	358	0.97
2	6	3.9e-06	0.00031	21.1	1.3	1	23	364	386	364	386	0.98
3	6	0.00039	0.031	14.8	2.5	1	23	392	416	392	417	0.94
4	6	0.00065	0.052	14.1	0.8	2	23	696	717	695	717	0.97
5	6	0.0018	0.14	12.8	0.1	1	23	1834	1858	1834	1858	0.97
6	6	8.8e-05	0.007	16.9	0.8	1	23	1989	2011	1989	2011	0.98

Sequence Information

Coding Sequence: ATGGCTGCCATAAATACGGTACCCAAGAGCATACACCTGCCATTGACAAGTCTCAGCAGCGCGCCGCGCGTGTTGATgtgcagcgcctccgtgggCACCGAGGGATCCGTAACTCTGCAACTAAGAGATGCGAACGCAGcaacagccgcagcagcagcaccagccccagcatcagcagcaacatcaatcGCCACATCAACGTCAGCGTCAGCAACAAATGGCGTTGCAGCGCTTGCCACCTCTGCGGCAACTGCGTCAGCGTCGACGCTAGAGAATGCGCTGACAATTGGCTATCCGGATCCGGAAATGTTGGCAGATGTCTTGGGCACCATTCAGACAGCCTCtcttaaaaacaacagcaacagtagcAGCAACTCAATCACAACAGCAACCTCAAGCAATAGTTCAAGCAAATCGACAAGCAGCAATCAAGTgggaaatacaaataaaataaccatAACCAGGCGAAGTGTTCAATCGGTGAGCACATCCACCAATACGAGTctcagtagcagcagcagcagcaacagcatcagcagcaccagcagcaacggcaacggcaagaCAAACACAAGCTACATAAAAAACTGCTTGAtacgcagcagcagctgcagcaacaCGGTCACAAATGTCACGACGTTGGCGCAGATTAtgagcaacagcagcaccagcagcgcGGCAAGTTTACTCAATCAgcataacaacaacagcaactgcagcaacagcagcaacttcAGCACCGCCTCCTCCGTgggcagcagcatcagcatcggcagcaatagcagcaacagcaatagcaacgacagcaacagcagcagcggcggcacaCACAGTTTGAGCTTCAAGGGCACCGGTAGACATGTTCCTGGATCAGTAAACGGAGTAAGCTCATCGGTCGGAGCGTCCTGCCACAGTGGCACTGTCACTGGCATCAGTGGGATCATCACCGTTGAACCACCGCGCAAGAATCGCCCGAAATTATCCTCACCGACGCGACACGGACCGCAGCAGTGCCAGATTTGTTGCAAGATCTTTGGAAATGCCTCGGCACTGGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATACATCtgtgcgctctgctcgaaggCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAATGTAAGGCGGATGGCTGTGGAAAGTCCTACTGCGACGCCCGATCACTGCGGCGACACTCGGAGAACCACCATGGAGGTGGCGCAACCACACCCACCACCAGCCAGTCCCTCTCGCCCATCGCCAGCTCCAGCGGagcaagcagcagcagcagcagcagcagtagtagcagcagcagtggcagtgtcAGTGGCAGCGGAAacggagtgggcgtggccaccAACACGCTCAGCCTCTCGCCGGCTACGGCCAGCGGGGACGCCAGTTCGCCGGACGGTGCCACCTGCATACGCACCTACATATCCACGGGCAACACGGTGGTGGATGCGGCCACCGGGATAGCTCTGTCGGATGAGCAGATCAAGGCCATGAACCTGCCGATCAAGACGGGCGTCACCCTGCTCTCGCCCACCACTTCGACCTCCTCGAACGCCTCCTCCACGGCCAGCAGCTCGGCCTCTTCGTCGTCCTCTGCCTCCGTGGGGACAGCCTCGTCGACGGCCAGCCAGAGTGCGGTTATAGCCACCACCAGCTCCCCCACCATAACGCTCAGCGACGGGGTGAGCCTCGAGGGCGAGGGCCTGACCCGCGAGCAGCTGGATCTCATCAGCAAGATCATGCAGCAGACGAAGCAGACAAGTGCCCAGGTCACCGTCTCCTCGCCCACCAGTGTCAGCTCCTACAAGATCAACACGAACTCGGCGTCGACCCAGTCCAGGCCTCGCACCTGGAACATGCAATTGCTCAACAATTCCCAGAATGTGACTGTCACCGTTGAGGATAATACCGACATGGTGCCACCCTCTTCCAACTCCCCCGTGGAGctcaaggaggaggagctgaacCAACAGCTTGTGGCCGCCATCAACCCCCACCTGCTCAACATAGTGAAGCTCGACAAGCCGGTCGAGTGCAATCTCTGTCACCGTAAGTTCAAAAACATACCCGCCCTCAATGGGCACATGCGTCTCCACGGCGGCTACTTCAAAAAGGATCCGGAAACCAGGCGCAGCGAGAAGAAGGATTCAAGTGGTCCGCCCCTGCAGACGGCCAGTATTGGTGTTCGTGCTCTAATCGAGGAGAAGATTATAAGCAAACGGAAGGATATCACAAAGGGCTCCTTTGTGGTTCCTGCCCCACCGCATAGTAGTGGCATCACCACCCCTCTGCGGCGTTCCATTAGCGACCTGGAGAGCTTCCTCAATCCCAAGAGCAGCTCGAGTGGACACACCCAGACATTGGCAACTAGTACGGGCACCACCACGGCCGTTCTTCCGGCCGCCACCACCATAAAGAGCAGCAACGGATTGAGTATCCAGCAGATTGGGCTGCCCCAGAGCATCGAGATCTTTAGCGGTGGCCAGAAGCAGTCCAAGACCCTGAATTTGGGCAGCGGCACCAATACCATCACCATAACCACCAACAATgtgcccaccaccaccacaatgAGTGCCCTGACCGCCTTGAAGGCCGGCGGAACCATCAGCGGCATATCCACGGCCACCAACACGGATCCCAAGGATTCCACCCTCATAGAGCTCCTGAAGCGAGGCACTCGCATTGCGGTGACCTCGAAGAAAACCCAATCTCAAACCCAAACCGGGTCCGGGGTCCTAATGACCTCCAGCGCCACAGCAACGAGTGGCATGACAGAATTGACCACCATTGGGGGCAACAGCCTGCAGACGGTTGGACGCCAGATTATCACAAACAACAACCGCACGGTGATCATACCCTCCGATGTCCAAGTGGTGTCAACCAAGAGCAAGCTGAGCACCTTGAGTAGTCTGGTCAAGAGCAGCACCACCTCCACAGTCTCCAACAACAGCTCGAACACAAGCTGCACATCGGGAAACATTTCCCTGGCCGATGGTACGCCGCTTTCACTGACCATAACTCCCAACCAGGAGATGTCCAGTGGTGGCACATCGTCGGGTGGTGTGATCACGAGTGGCGGGGGCGGAGTTTACACAGTGACCTACACCAGCGACGGTACCGATCTATTTGACGATACCGAAGTCTACAACGTCACCGATACGGAGATGCTGCTGCAGACGGTGGACTCCATGGAGCTGCTGcaggacgacgaggaggacacACACATCAAGAGCGAACATTCCGAGGACTTTGCCCTGCTGAGCGATGCTGGCGACAGTGTGCACACCCAGCTGGTGAAGCTGGACACGGAGAATATATCCGGAACGGGTAACACTGGAACCAGCAACGCCGCCATTAACAACGCCACCACCACACCGCTGCCCACCTTCCAACAATTCCATTCCAAAGAACTGATCATGCAGAACAGTTCGCAGATCCAGGCAATAGCTAGCATGCGGAGCAGTAGCGGTGTCTTGGCCTCGCCGCTTCACTCCCCTCTGGCCTATCCCACACCACCATCTAGCCACGAGAACATGGCCCAGAGCTCCCCCTTCATCGAGGATGCAGCTGCCCAGTTTGTGGATGCCAGCAACACTTTCTTCGGCGACAAGACGGACTTCTCGCACATCTACTTCAAGACCGATGATGGCCAGGCTACCATCGAGCAGCTGGACGAGCAGGACAATGAGAAGATCCTGAAGCTCAAATCGGTGCTGGAGGAGAGCAGCTTCGATCCCTCTATCAAGGTGGAGGACCTACTGAATGGAACGGACGACGACACCGAGTGTGACCTGCGGGAGTTTGCCGAGACGAATCTCTCGTTCCTGGATGAGGACCAAGAGTTCCTCAACGACTCCCGCAATGCCACCTCCCCGCTCTCAGAGTCGTTCTTCACCAGCGGCATCGGTTCTGCAGAGGATGTGAAACAGGTCCTGCGAGAAGTCCTGCCCGATGAGAACATGCAGCTGCAGATGACCAGCGAGCAACAGGGCGATAATATCATCGATCTCTACTATCTACCCGGGCTGGGCTTGCAATCGCAGATGATGCCCAATTCGGAGGATCCTTTGTTGTCGTCATCGCCTAGGGAGTTTGGACAGCAAAGGCAGCAGGTGGgtctgcaacaacaacagcaacagcaacagcagcagcagcaacagcatcagaCCCTGGAGCAGCAAATACAAGGCACCAACAATAACCTgtaccagcaacaacagcaggaGCAACAGCCGCCTCAGCAGGagccacaacagcaacagcagcagcagcaacaattgaTGTTGCCACAGCAACAGCTGAATCAATCCGAGTCACTCCCTGTGGCCAGCAATCAGCAGGGAGATTTTATGCTGCCCCTGGTGGGAGGTCATGGCTTTACGTCGCTGTCCAACCAAAACCAATTCCTGGACAATAGCCAGGGGGGCGGAATGGTACTGCAGCCCCTAAATAGCCTGCTCCAGCCCCTGCTCTTCAGCAGCAGTGGACCTAGTTCGCATAGCAATTTGGTTGCGGGCAACGATACCCACCTCCCCACCGATTGCCAAATGAATACAAATCAGACAACGCAGCTCGATGGAAGTTTGATGTTCGCCTGCGGCCCGGCAGCGGCGGTAACAACGGGCAACAAGCCCCTGCTCCCGGCCATGCCAACTCCAGTGGCCAATTTGCAGCCGCTGTCGAACCAAACCAATTCCATTCTGAAACGCCGACTGCGCTCGAATGCGCCCCAGGAAACGCACAAGTTCTCCAAGTTCCATACCCTATCGCCGCACCGCTCCAAGCTGCGCAAGCCCTCCCGCACCCACTACACTCCAGCCCCCATCCTCAATCCGGACCGCAAGGGCACCGGACTCTACTGCAACGTGCGGAAGCAGCTGGGCCAGGGTCTTTTCGATGCCTTCGATGATGACTTTGGGGATCCGGTGGGTCTGGTTGACTTCTCCGACGAATCGAAGGTGAACCTCGGCTCCACCTACCAGGCGCAGATTCCCAGCTGCCGGCCCCAGGAGGAGGCGGTGCGGGAGGATGTTGGCGCCGAAATGATGTGGAATCCCGAAGTGCAAGAAGACGAGAAGATCCTGATGCGCTACATAGATCTCAGCAAGTCGTCGGCCGTGCCAATGGGCAGTCATTCCGAGGAGGTGGCACTCCACACGCTGCTCAAGGCCCAGGGGAACTCGGCGGCGGCGGTATTGAATCTGCTGCAGACCCAGTCCGGCTCCTTCCAGATGAAGTGGAGCTCCCACGAGCTGGAGCAGTTCCTGCGAGGTCTGGAGAAGCATGGCAAGGATTTTGGCAAGATTGCGAATACTCTCCTGACAAAATCCTCCGGCGAGTGCGTGCAGATGTACTATTTCTGGAAGAAGCTGTGCGTGGACTACAAGGTATCGCACCTGAAGATGGAGCCGGTGGTCGTGGTAACGCCCCCCATTGAGAAGCCCTATGTGTGCGAGATCCCCGACTGCTCAGCGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTACGGCCGTaatgccagcaacaacaacagcaacaacaacaatggcagcaacagtaacagcaacaacggcagcagcaacatcagtaACCAGCATGCAACAGCAAACAGTGCCAGCAATACTGGCAGCAACATCCTCAACAACAGCGGATACGCATGTGCAACACTCACTAGTGGCAACAATAACCTCAACAACAATGCCGCATCGTCAGCAACCGCAGCTGCAGCAACTCATGCCATGAGCAACAGTAGCAACTGCAATCTGAATTCGAATAGCAACACGACGACAGCAACATCGTCCTCAATCTTAGCCACTTCTAAGCTGGAATCGGGTATTGgtaatggcaatggcaatggcaacaCCACTGTCCCGAATGCCAAGGAGGGCGAATTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAGAGTCGTAGTGCTCACATGAAAACCCATCGGGTCCAGGAACCGGAACAATCTGCaaaacaccagcaacagcaacagcagcagcaacaacaacatcaagtCAATGTCACGACAGGATCTGGACTGGCAGGTGCCGCCTCGACTTCAACGATCGTATCGATAACATAG
Protein Sequence: MAAINTVPKSIHLPLTSLSSAPRVLMCSASVGTEGSVTLQLRDANAATAAAAAPAPASAATSIATSTSASATNGVAALATSAATASASTLENALTIGYPDPEMLADVLGTIQTASLKNNSNSSSNSITTATSSNSSSKSTSSNQVGNTNKITITRRSVQSVSTSTNTSLSSSSSSNSISSTSSNGNGKTNTSYIKNCLIRSSSCSNTVTNVTTLAQIMSNSSTSSAASLLNQHNNNSNCSNSSNFSTASSVGSSISIGSNSSNSNSNDSNSSSGGTHSLSFKGTGRHVPGSVNGVSSSVGASCHSGTVTGISGIITVEPPRKNRPKLSSPTRHGPQQCQICCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHGGGATTPTTSQSLSPIASSSGASSSSSSSSSSSSSGSVSGSGNGVGVATNTLSLSPATASGDASSPDGATCIRTYISTGNTVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSSASSSSSASVGTASSTASQSAVIATTSSPTITLSDGVSLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTNSASTQSRPRTWNMQLLNNSQNVTVTVEDNTDMVPPSSNSPVELKEEELNQQLVAAINPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETRRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDITKGSFVVPAPPHSSGITTPLRRSISDLESFLNPKSSSSGHTQTLATSTGTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQSKTLNLGSGTNTITITTNNVPTTTTMSALTALKAGGTISGISTATNTDPKDSTLIELLKRGTRIAVTSKKTQSQTQTGSGVLMTSSATATSGMTELTTIGGNSLQTVGRQIITNNNRTVIIPSDVQVVSTKSKLSTLSSLVKSSTTSTVSNNSSNTSCTSGNISLADGTPLSLTITPNQEMSSGGTSSGGVITSGGGGVYTVTYTSDGTDLFDDTEVYNVTDTEMLLQTVDSMELLQDDEEDTHIKSEHSEDFALLSDAGDSVHTQLVKLDTENISGTGNTGTSNAAINNATTTPLPTFQQFHSKELIMQNSSQIQAIASMRSSSGVLASPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDDGQATIEQLDEQDNEKILKLKSVLEESSFDPSIKVEDLLNGTDDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQMTSEQQGDNIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQQVGLQQQQQQQQQQQQQHQTLEQQIQGTNNNLYQQQQQEQQPPQQEPQQQQQQQQQLMLPQQQLNQSESLPVASNQQGDFMLPLVGGHGFTSLSNQNQFLDNSQGGGMVLQPLNSLLQPLLFSSSGPSSHSNLVAGNDTHLPTDCQMNTNQTTQLDGSLMFACGPAAAVTTGNKPLLPAMPTPVANLQPLSNQTNSILKRRLRSNAPQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGLFDAFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPSCRPQEEAVREDVGAEMMWNPEVQEDEKILMRYIDLSKSSAVPMGSHSEEVALHTLLKAQGNSAAAVLNLLQTQSGSFQMKWSSHELEQFLRGLEKHGKDFGKIANTLLTKSSGECVQMYYFWKKLCVDYKVSHLKMEPVVVVTPPIEKPYVCEIPDCSASFSSKAALHGHVRIHAYGRNASNNNSNNNNGSNSNSNNGSSNISNQHATANSASNTGSNILNNSGYACATLTSGNNNLNNNAASSATAAAATHAMSNSSNCNLNSNSNTTTATSSSILATSKLESGIGNGNGNGNTTVPNAKEGEFPCKVCGKVFNKVKSRSAHMKTHRVQEPEQSAKHQQQQQQQQQQHQVNVTTGSGLAGAASTSTIVSIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00477570;
90% Identity: iTF_00481772;
80% Identity: iTF_00550195;