Basic Information

Gene Symbol
Trerf1
Assembly
GCA_035047585.1
Location
JAWNPJ010000115.1:814897-827522[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5e-08 5.1e-05 23.4 0.1 2 45 1763 1806 1762 1807 0.93

Sequence Information

Coding Sequence
ATGGCTGCCATAAATACGGTACCCAAGAGCATACACCTGCCATTGACAAGTCTCAGCAGCGCGCCGCGCGTGTTGATgtgcagcgcctccgtgggCACCGAGGGATCCGTAACTCTGCAACTAAGAGATGCGAACGCAGcaacagccgcagcagcagcaccagccccagcatcagcagcaacatcaatcGCCACATCAACGTCAGCGTCAGCAACAAATGGCGTTGCAGCGCTTGCCACCTCTGCGGCAACTGCGTCAGCGTCGACGCTAGAGAATGCGCTGACAATTGGCTATCCGGATCCGGAAATGTTGGCAGATGTCTTGGGCACCATTCAGACAGCCTCtcttaaaaacaacagcaacagtagcAGCAACTCAATCACAACAGCAACCTCAAGCAATAGTTCAAGCAAATCGACAAGCAGCAATCAAGTgggaaatacaaataaaataaccatAACCAGGCGAAGTGTTCAATCGGTGAGCACATCCACCAATACGAGTctcagtagcagcagcagcagcaacagcatcagcagcaccagcagcaacggcaacggcaagaCAAACACAAGCTACATAAAAAACTGCTTGAtacgcagcagcagctgcagcaacaCGGTCACAAATGTCACGACGTTGGCGCAGATTAtgagcaacagcagcaccagcagcgcGGCAAGTTTACTCAATCAgcataacaacaacagcaactgcagcaacagcagcaacttcAGCACCGCCTCCTCCGTgggcagcagcatcagcatcggcagcaatagcagcaacagcaatagcaacgacagcaacagcagcagcggcggcacaCACAGTTTGAGCTTCAAGGGCACCGGTAGACATGTTCCTGGATCAGTAAACGGAGTAAGCTCATCGGTCGGAGCGTCCTGCCACAGTGGCACTGTCACTGGCATCAGTGGGATCATCACCGTTGAACCACCGCGCAAGAATCGCCCGAAATTATCCTCACCGACGCGACACGGACCGCAGCAGTGCCAGATTTGTTGCAAGATCTTTGGAAATGCCTCGGCACTGGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATACATCtgtgcgctctgctcgaaggCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAATGTAAGGCGGATGGCTGTGGAAAGTCCTACTGCGACGCCCGATCACTGCGGCGACACTCGGAGAACCACCATGGAGGTGGCGCAACCACACCCACCACCAGCCAGTCCCTCTCGCCCATCGCCAGCTCCAGCGGagcaagcagcagcagcagcagcagcagtagtagcagcagcagtggcagtgtcAGTGGCAGCGGAAacggagtgggcgtggccaccAACACGCTCAGCCTCTCGCCGGCTACGGCCAGCGGGGACGCCAGTTCGCCGGACGGTGCCACCTGCATACGCACCTACATATCCACGGGCAACACGGTGGTGGATGCGGCCACCGGGATAGCTCTGTCGGATGAGCAGATCAAGGCCATGAACCTGCCGATCAAGACGGGCGTCACCCTGCTCTCGCCCACCACTTCGACCTCCTCGAACGCCTCCTCCACGGCCAGCAGCTCGGCCTCTTCGTCGTCCTCTGCCTCCGTGGGGACAGCCTCGTCGACGGCCAGCCAGAGTGCGGTTATAGCCACCACCAGCTCCCCCACCATAACGCTCAGCGACGGGGTGAGCCTCGAGGGCGAGGGCCTGACCCGCGAGCAGCTGGATCTCATCAGCAAGATCATGCAGCAGACGAAGCAGACAAGTGCCCAGGTCACCGTCTCCTCGCCCACCAGTGTCAGCTCCTACAAGATCAACACGAACTCGGCGTCGACCCAGTCCAGGCCTCGCACCTGGAACATGCAATTGCTCAACAATTCCCAGAATGTGACTGTCACCGTTGAGGATAATACCGACATGGTGCCACCCTCTTCCAACTCCCCCGTGGAGctcaaggaggaggagctgaacCAACAGCTTGTGGCCGCCATCAACCCCCACCTGCTCAACATAGTGAAGCTCGACAAGCCGGTCGAGTGCAATCTCTGTCACCGTAAGTTCAAAAACATACCCGCCCTCAATGGGCACATGCGTCTCCACGGCGGCTACTTCAAAAAGGATCCGGAAACCAGGCGCAGCGAGAAGAAGGATTCAAGTGGTCCGCCCCTGCAGACGGCCAGTATTGGTGTTCGTGCTCTAATCGAGGAGAAGATTATAAGCAAACGGAAGGATATCACAAAGGGCTCCTTTGTGGTTCCTGCCCCACCGCATAGTAGTGGCATCACCACCCCTCTGCGGCGTTCCATTAGCGACCTGGAGAGCTTCCTCAATCCCAAGAGCAGCTCGAGTGGACACACCCAGACATTGGCAACTAGTACGGGCACCACCACGGCCGTTCTTCCGGCCGCCACCACCATAAAGAGCAGCAACGGATTGAGTATCCAGCAGATTGGGCTGCCCCAGAGCATCGAGATCTTTAGCGGTGGCCAGAAGCAGTCCAAGACCCTGAATTTGGGCAGCGGCACCAATACCATCACCATAACCACCAACAATgtgcccaccaccaccacaatgAGTGCCCTGACCGCCTTGAAGGCCGGCGGAACCATCAGCGGCATATCCACGGCCACCAACACGGATCCCAAGGATTCCACCCTCATAGAGCTCCTGAAGCGAGGCACTCGCATTGCGGTGACCTCGAAGAAAACCCAATCTCAAACCCAAACCGGGTCCGGGGTCCTAATGACCTCCAGCGCCACAGCAACGAGTGGCATGACAGAATTGACCACCATTGGGGGCAACAGCCTGCAGACGGTTGGACGCCAGATTATCACAAACAACAACCGCACGGTGATCATACCCTCCGATGTCCAAGTGGTGTCAACCAAGAGCAAGCTGAGCACCTTGAGTAGTCTGGTCAAGAGCAGCACCACCTCCACAGTCTCCAACAACAGCTCGAACACAAGCTGCACATCGGGAAACATTTCCCTGGCCGATGGTACGCCGCTTTCACTGACCATAACTCCCAACCAGGAGATGTCCAGTGGTGGCACATCGTCGGGTGGTGTGATCACGAGTGGCGGGGGCGGAGTTTACACAGTGACCTACACCAGCGACGGTACCGATCTATTTGACGATACCGAAGTCTACAACGTCACCGATACGGAGATGCTGCTGCAGACGGTGGACTCCATGGAGCTGCTGcaggacgacgaggaggacacACACATCAAGAGCGAACATTCCGAGGACTTTGCCCTGCTGAGCGATGCTGGCGACAGTGTGCACACCCAGCTGGTGAAGCTGGACACGGAGAATATATCCGGAACGGGTAACACTGGAACCAGCAACGCCGCCATTAACAACGCCACCACCACACCGCTGCCCACCTTCCAACAATTCCATTCCAAAGAACTGATCATGCAGAACAGTTCGCAGATCCAGGCAATAGCTAGCATGCGGAGCAGTAGCGGTGTCTTGGCCTCGCCGCTTCACTCCCCTCTGGCCTATCCCACACCACCATCTAGCCACGAGAACATGGCCCAGAGCTCCCCCTTCATCGAGGATGCAGCTGCCCAGTTTGTGGATGCCAGCAACACTTTCTTCGGCGACAAGACGGACTTCTCGCACATCTACTTCAAGACCGATGATGGCCAGGCTACCATCGAGCAGCTGGACGAGCAGGACAATGAGAAGATCCTGAAGCTCAAATCGGTGCTGGAGGAGAGCAGCTTCGATCCCTCTATCAAGGTGGAGGACCTACTGAATGGAACGGACGACGACACCGAGTGTGACCTGCGGGAGTTTGCCGAGACGAATCTCTCGTTCCTGGATGAGGACCAAGAGTTCCTCAACGACTCCCGCAATGCCACCTCCCCGCTCTCAGAGTCGTTCTTCACCAGCGGCATCGGTTCTGCAGAGGATGTGAAACAGGTCCTGCGAGAAGTCCTGCCCGATGAGAACATGCAGCTGCAGATGACCAGCGAGCAACAGGGCGATAATATCATCGATCTCTACTATCTACCCGGGCTGGGCTTGCAATCGCAGATGATGCCCAATTCGGAGGATCCTTTGTTGTCGTCATCGCCTAGGGAGTTTGGACAGCAAAGGCAGCAGGTGGgtctgcaacaacaacagcaacagcaacagcagcagcagcaacagcatcagaCCCTGGAGCAGCAAATACAAGGCACCAACAATAACCTgtaccagcaacaacagcaggaGCAACAGCCGCCTCAGCAGGagccacaacagcaacagcagcagcagcaacaattgaTGTTGCCACAGCAACAGCTGAATCAATCCGAGTCACTCCCTGTGGCCAGCAATCAGCAGGGAGATTTTATGCTGCCCCTGGTGGGAGGTCATGGCTTTACGTCGCTGTCCAACCAAAACCAATTCCTGGACAATAGCCAGGGGGGCGGAATGGTACTGCAGCCCCTAAATAGCCTGCTCCAGCCCCTGCTCTTCAGCAGCAGTGGACCTAGTTCGCATAGCAATTTGGTTGCGGGCAACGATACCCACCTCCCCACCGATTGCCAAATGAATACAAATCAGACAACGCAGCTCGATGGAAGTTTGATGTTCGCCTGCGGCCCGGCAGCGGCGGTAACAACGGGCAACAAGCCCCTGCTCCCGGCCATGCCAACTCCAGTGGCCAATTTGCAGCCGCTGTCGAACCAAACCAATTCCATTCTGAAACGCCGACTGCGCTCGAATGCGCCCCAGGAAACGCACAAGTTCTCCAAGTTCCATACCCTATCGCCGCACCGCTCCAAGCTGCGCAAGCCCTCCCGCACCCACTACACTCCAGCCCCCATCCTCAATCCGGACCGCAAGGGCACCGGACTCTACTGCAACGTGCGGAAGCAGCTGGGCCAGGGTCTTTTCGATGCCTTCGATGATGACTTTGGGGATCCGGTGGGTCTGGTTGACTTCTCCGACGAATCGAAGGTGAACCTCGGCTCCACCTACCAGGCGCAGATTCCCAGCTGCCGGCCCCAGGAGGAGGCGGTGCGGGAGGATGTTGGCGCCGAAATGATGTGGAATCCCGAAGTGCAAGAAGACGAGAAGATCCTGATGCGCTACATAGATCTCAGCAAGTCGTCGGCCGTGCCAATGGGCAGTCATTCCGAGGAGGTGGCACTCCACACGCTGCTCAAGGCCCAGGGGAACTCGGCGGCGGCGGTATTGAATCTGCTGCAGACCCAGTCCGGCTCCTTCCAGATGAAGTGGAGCTCCCACGAGCTGGAGCAGTTCCTGCGAGGTCTGGAGAAGCATGGCAAGGATTTTGGCAAGATTGCGAATACTCTCCTGACAAAATCCTCCGGCGAGTGCGTGCAGATGTACTATTTCTGGAAGAAGCTGTGCGTGGACTACAAGGTATCGCACCTGAAGATGGAGCCGGTGGTCGTGGTAACGCCCCCCATTGAGAAGCCCTATGTGTGCGAGATCCCCGACTGCTCAGCGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTACGGCCGTaatgccagcaacaacaacagcaacaacaacaatggcagcaacagtaacagcaacaacggcagcagcaacatcagtaACCAGCATGCAACAGCAAACAGTGCCAGCAATACTGGCAGCAACATCCTCAACAACAGCGGATACGCATGTGCAACACTCACTAGTGGCAACAATAACCTCAACAACAATGCCGCATCGTCAGCAACCGCAGCTGCAGCAACTCATGCCATGAGCAACAGTAGCAACTGCAATCTGAATTCGAATAGCAACACGACGACAGCAACATCGTCCTCAATCTTAGCCACTTCTAAGCTGGAATCGGGTATTGgtaatggcaatggcaatggcaacaCCACTGTCCCGAATGCCAAGGAGGGCGAATTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAGAGTCGTAGTGCTCACATGAAAACCCATCGGGTCCAGGAACCGGAACAATCTGCaaaacaccagcaacagcaacagcagcagcaacaacaacatcaagtCAATGTCACGACAGGATCTGGACTGGCAGGTGCCGCCTCGACTTCAACGATCGTATCGATAACATAG
Protein Sequence
MAAINTVPKSIHLPLTSLSSAPRVLMCSASVGTEGSVTLQLRDANAATAAAAAPAPASAATSIATSTSASATNGVAALATSAATASASTLENALTIGYPDPEMLADVLGTIQTASLKNNSNSSSNSITTATSSNSSSKSTSSNQVGNTNKITITRRSVQSVSTSTNTSLSSSSSSNSISSTSSNGNGKTNTSYIKNCLIRSSSCSNTVTNVTTLAQIMSNSSTSSAASLLNQHNNNSNCSNSSNFSTASSVGSSISIGSNSSNSNSNDSNSSSGGTHSLSFKGTGRHVPGSVNGVSSSVGASCHSGTVTGISGIITVEPPRKNRPKLSSPTRHGPQQCQICCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHGGGATTPTTSQSLSPIASSSGASSSSSSSSSSSSSGSVSGSGNGVGVATNTLSLSPATASGDASSPDGATCIRTYISTGNTVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSSASSSSSASVGTASSTASQSAVIATTSSPTITLSDGVSLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTNSASTQSRPRTWNMQLLNNSQNVTVTVEDNTDMVPPSSNSPVELKEEELNQQLVAAINPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETRRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDITKGSFVVPAPPHSSGITTPLRRSISDLESFLNPKSSSSGHTQTLATSTGTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQSKTLNLGSGTNTITITTNNVPTTTTMSALTALKAGGTISGISTATNTDPKDSTLIELLKRGTRIAVTSKKTQSQTQTGSGVLMTSSATATSGMTELTTIGGNSLQTVGRQIITNNNRTVIIPSDVQVVSTKSKLSTLSSLVKSSTTSTVSNNSSNTSCTSGNISLADGTPLSLTITPNQEMSSGGTSSGGVITSGGGGVYTVTYTSDGTDLFDDTEVYNVTDTEMLLQTVDSMELLQDDEEDTHIKSEHSEDFALLSDAGDSVHTQLVKLDTENISGTGNTGTSNAAINNATTTPLPTFQQFHSKELIMQNSSQIQAIASMRSSSGVLASPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDDGQATIEQLDEQDNEKILKLKSVLEESSFDPSIKVEDLLNGTDDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQMTSEQQGDNIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQQVGLQQQQQQQQQQQQQHQTLEQQIQGTNNNLYQQQQQEQQPPQQEPQQQQQQQQQLMLPQQQLNQSESLPVASNQQGDFMLPLVGGHGFTSLSNQNQFLDNSQGGGMVLQPLNSLLQPLLFSSSGPSSHSNLVAGNDTHLPTDCQMNTNQTTQLDGSLMFACGPAAAVTTGNKPLLPAMPTPVANLQPLSNQTNSILKRRLRSNAPQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGLFDAFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPSCRPQEEAVREDVGAEMMWNPEVQEDEKILMRYIDLSKSSAVPMGSHSEEVALHTLLKAQGNSAAAVLNLLQTQSGSFQMKWSSHELEQFLRGLEKHGKDFGKIANTLLTKSSGECVQMYYFWKKLCVDYKVSHLKMEPVVVVTPPIEKPYVCEIPDCSASFSSKAALHGHVRIHAYGRNASNNNSNNNNGSNSNSNNGSSNISNQHATANSASNTGSNILNNSGYACATLTSGNNNLNNNAASSATAAAATHAMSNSSNCNLNSNSNTTTATSSSILATSKLESGIGNGNGNGNTTVPNAKEGEFPCKVCGKVFNKVKSRSAHMKTHRVQEPEQSAKHQQQQQQQQQQHQVNVTTGSGLAGAASTSTIVSIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00477570;
90% Identity
iTF_00481772;
80% Identity
iTF_00550489;