Dmoj012450.1
Basic Information
- Insect
- Drosophila mojavensis
- Gene Symbol
- -
- Assembly
- GCA_018153725.1
- Location
- JAECYD010000049.1:3906475-3909656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0084 0.65 10.6 0.3 2 23 25 46 24 46 0.96 2 12 0.00031 0.024 15.1 3.8 1 23 52 75 52 75 0.98 3 12 0.00022 0.017 15.5 0.2 1 23 116 138 116 138 0.95 4 12 0.26 20 5.9 1.7 2 23 406 428 405 428 0.94 5 12 0.013 1 9.9 0.9 1 23 453 475 453 475 0.98 6 12 0.82 64 4.3 5.2 1 23 483 507 483 507 0.91 7 12 0.21 16 6.2 2.2 2 23 512 534 511 534 0.94 8 12 0.00028 0.022 15.2 0.2 2 21 547 566 546 567 0.93 9 12 0.21 16 6.2 1.0 1 23 575 597 575 597 0.97 10 12 8.4e-07 6.5e-05 23.2 2.8 1 23 603 626 603 626 0.98 11 12 3.3e-05 0.0026 18.1 1.4 1 23 632 654 632 654 0.98 12 12 0.00031 0.024 15.1 2.9 1 23 660 682 660 682 0.95
Sequence Information
- Coding Sequence
- ATGGCAGCACAATCAGTGAACGCTGGTCAGAAAATGTTGGTGGAAATAACAACGGACGGCATACCGAAGCTTCACTGTCCCGTCTGCAACAAGGCGTTAATTTCGCTCGCCGGCTACGTGAAGCATGTGAAAAAACATGAGCCACCGGGTGGCTTCCGGTGTCGCAACTGTGAGCTTACGTTTTGCCATGAAGAGCAGCTGAAGGAGCATCTGAGGATTGCACACAACGCCTACATCGAATGTCGCCTGTGCCACAGCCTGTTCGGCAGCGAGGTGGAACACGAGGCACATATCGAGGAGGCGCATCAGGAGCGTAAATTTAACGTGACCCAGGATCAGGAGCTCTTCAAGTGCGAGCTGTGCGGCAAGAGCTTTGCAGATCGCGAGAGTAGTGCGAAGCATCAAGCCGAGCACGAAGAGAAACTCAAAGGGAGCACCACAAACCAGGCCAAGCAGCAGCGGAACTGTAGACAAGGTTTTCCCACTCCTGCGGATGCACCTGCGAACGTAGTCAAACGAAAGCGTGGAAGACCTAAGAAATGTCCAGTGCCAGCCTCAGAGGACAGCGACGACGATGTTCCGCTGGCCAGCAGGCTAAAAGTTCAGGCGCCTATGAAACTGAAACAAGAGTTCGTTAGCAGCCAGGAGCTAAGCGATACGGATGAGGAGTATCCCGACTTCGAGCCCAACAACAGCGACGAGGAAGCGGATGCGAATCAGTTTAAGCTACCTCCTCCAGCGCTCGTCAAAGAGGAAGCCATCGATCCCGACTTTGAGTATCAGGATGCCAGCGCCTTCGTTAAGATGGAGGGCAGTAACGGATTGGACATCTACAGCAATGAGAAGGATAAACTCCTGGATGTCCTGCTCAACCAGGACGAGAGTATGAAGCCGTACGAGCATTTGAAAGTGGAGCACGCAACGGGCATATTGGACGAAATCGCCGCTGTGCCCATGGCCAAGCAGAACGGGGAGGACCACATGGAGGAGGATGTGCTAGCACTGCGCGAAACGGAGCCAGACAGTGAGGAGGAGGCTCAACTGCGTCCACTCAGCAAATCCAGTGTAAAGCGCAAATATCGAAAGAGAGGAGCTGCTGCCGCCTCTACGGAGGTCCAGGAAGAAACAACGACCGCTCCTCGCCGTGTGGCCAAAATAACCAAAAAGGAACTGAAGGAGCGCCTAAAAATGCTGAGTAAAATGGAGAAGACGTGGCAGTGTCCACACTGTGTGAAAATCTATCACATCCGCAAGCCATACGAGAAGCATCTGCGCGACGACCACAAGCTAAGCGAACAGGCTGTCAAGGAGCTCTTCAAGGATGCGGATGCACATGCCAAGCTGGATGAGGAAGTGTTCAAATGCAAAATCTGCAGCAAGATCTACTTGGTAGAGAAACGCCTGGAGACGCACATGAAGGTGCACGGCAAGGACGGCAGCCTGATCCACAAGTGCCCCTGCTATTGCAACCTGTTCTTCGCCAGCAAGGAGCTAGCCACACAGCACGCCCACCAGCAGCACAAGGAGCTGCTCTACTGCGAGAAGTGTGACAAGTACATGACCGGGCATGACAGCCTGAAGAACCACGAGAAGAACTACCATGCCCGCAAGGAGCCACGCAATCTGCCGCGGAATCTGATTTGCGATAAGTGTGGCAAGAAATTCACGGGGCGCACCTCGCTCTCGGATCACGTGCGCTCCGAATGTGGGCGAGTGCCCCTATACGAGTGCAGCGTTTGCTGCAAGCGGCTCTCCACAGCGGGAATATTGAAAACACACATGCTCCTGCACCAGTCGGAGACGCCGTACCAGTGCGACAAGTGCGGGAAGACGTTCAAGGTGAAGGCGCAGTACAAATCGCACTTGAAGACCCGTCACACAGACAACAAGCCCTACAAGTGCCATCTCTGTCCCAAGGAGTATCCATATCGGGAAAGCCTTTTAACCCACATGACTGTGCACACGGGCATCAAGCGCTTCCTTTGCAACAACTGCGGCAAACGCTTCACATGCATCTCCAATCTTCAGGCGCATCGAAAGGTGCACGCCGACACCTGTGGGCAGCTGCCCCTGAATGCGAAAGCCACGCAATATATGGGCGTGCAGCGGGGCAAACTGCTAATGGGAGCCAAGCCAGAGGCGGGCATGGAATACGAGGAGACAAAAACTCTAATTGCCCAGGATGTGATCGATCGGGACATGCCGATGGCGCAGGAGCTGAACTTTCCATCCGATGGCAGCGCGCCGCTGGCAACGGTTCCACTCAATTATGCTTCATCACATCTGGTGCCGCACATTGTGCTGCAGACGATGCAGGCTGAGGCAAGGACACAGGATTAG
- Protein Sequence
- MAAQSVNAGQKMLVEITTDGIPKLHCPVCNKALISLAGYVKHVKKHEPPGGFRCRNCELTFCHEEQLKEHLRIAHNAYIECRLCHSLFGSEVEHEAHIEEAHQERKFNVTQDQELFKCELCGKSFADRESSAKHQAEHEEKLKGSTTNQAKQQRNCRQGFPTPADAPANVVKRKRGRPKKCPVPASEDSDDDVPLASRLKVQAPMKLKQEFVSSQELSDTDEEYPDFEPNNSDEEADANQFKLPPPALVKEEAIDPDFEYQDASAFVKMEGSNGLDIYSNEKDKLLDVLLNQDESMKPYEHLKVEHATGILDEIAAVPMAKQNGEDHMEEDVLALRETEPDSEEEAQLRPLSKSSVKRKYRKRGAAAASTEVQEETTTAPRRVAKITKKELKERLKMLSKMEKTWQCPHCVKIYHIRKPYEKHLRDDHKLSEQAVKELFKDADAHAKLDEEVFKCKICSKIYLVEKRLETHMKVHGKDGSLIHKCPCYCNLFFASKELATQHAHQQHKELLYCEKCDKYMTGHDSLKNHEKNYHARKEPRNLPRNLICDKCGKKFTGRTSLSDHVRSECGRVPLYECSVCCKRLSTAGILKTHMLLHQSETPYQCDKCGKTFKVKAQYKSHLKTRHTDNKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMEYEETKTLIAQDVIDRDMPMAQELNFPSDGSAPLATVPLNYASSHLVPHIVLQTMQAEARTQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00506346;
- 90% Identity
- iTF_00532638;
- 80% Identity
- -