Dmim002211.1
Basic Information
- Insect
- Drosophila mimica
- Gene Symbol
- -
- Assembly
- GCA_037043585.1
- Location
- JBAMBE010000361.1:2641310-2646375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0023 0.15 12.5 2.1 2 23 145 166 144 166 0.97 2 13 6.2e-06 0.0004 20.6 0.6 1 23 405 427 405 427 0.99 3 13 3.3 2.1e+02 2.6 0.8 1 23 433 456 433 456 0.92 4 13 5.6 3.6e+02 1.9 0.4 1 23 485 508 485 508 0.90 5 13 0.01 0.67 10.5 2.4 5 23 779 797 776 797 0.91 6 13 0.048 3.1 8.4 1.4 1 23 803 826 803 826 0.98 7 13 7.3 4.7e+02 1.5 1.0 2 19 866 884 862 886 0.55 8 13 0.0031 0.2 12.1 0.7 1 23 906 929 906 929 0.97 9 13 0.012 0.75 10.3 0.4 1 23 1145 1168 1145 1168 0.92 10 13 0.00034 0.022 15.1 3.0 1 23 1182 1204 1182 1204 0.98 11 13 0.0016 0.1 13.0 4.0 2 23 1236 1260 1235 1260 0.90 12 13 0.017 1.1 9.8 0.1 1 23 1265 1287 1265 1287 0.98 13 13 0.0064 0.42 11.1 1.3 1 23 1293 1316 1293 1316 0.96
Sequence Information
- Coding Sequence
- ATGGCGCACAAACGTTTGAAAGCAGCGGACATGgaaatcaattacaaattcGCATGTCGCTGTTGCCTCAAATCCGAGGCGGAATTCTTCAAGCTGGACTCTCTCATCGACTGTAGCAACGAGGATGCCAATGGCAATGACAATGATGCCGCGTCCTCCAAAAAGTTGCCCTTGTTGCGTTTACTGCTCTTCTGCATGCGCACCGAAAATCTGCCGGAGCTGCCGCAGTACATTTGCGTGGAATGCCGAAAAAGTTTACAAATTGCCTACTATTTCATACAGAACGGTTTGCGTGCACACGAAATATTGTGTCGCAAACTGTGTCCCGGCAAGCTGCAAACCAGATCGCGCATCAACGGACAACACTTAGCCCAAAGGATGGAGGCAAAAGCTGGTACAGCGTCGCTTGACACGCACAGGGAGAGTCCcctaaaatgcaaaatatgcgGTGAGGTTATCCACAATCGCTTGGAGCTCAATCATCATCTCCGAATGCATTCAGAGTACCGACACCAGtgtaaattgtgcaattttgtAACGCATAAGCATCGCCCGCTGCTGGAGCACTATCGCAAATCGCATGGCTTGACAACGGCCCAAATTGAGAACCAGCTGAAAATACGAAGATCTGTGCAAGCGACTgccacaacatcaacaaaagcGATAGCAGCTGCAACCACAGAaacgcctgctgctgctgcggatgATGATGGTCAGGTGAAGGTGTGCACAATGGAGGACATGGAGCTGCTGATACCCACAGTGCTAACGCCCGAGGATTTCACGCATCCACAACTGTATGCGGATCAATTGCGTGACATTGAACAGCAATTGACGAGCAGCTCGCTGAGAGTGGCCAACACCACAGCTGCATCCACGGAACCAGTGACGGCAAATGCCAGCGGAAGCAGTGCCAACATGAGCATTGGTGCGGAGTTTTTGGTCATGCCCGACGGCTCTTTGCAGCAGGTGAATGATGGTGGCGTTGTCTTCGAATACATTGATGATAGTAAAAGTGCGGccggcacaacaacaacaacaagcacatcGACCAATGTGACTCTGGAGAGCTTGTTGAGTGACTCGAAAACCGATCTAACCTATGATGCAATGGACATTGATCTGAGTCATATGGTTGTCGATAATGCGCTGCCACAGATAACAGTTAAGCCCAAGGCGCGACCAGCGCCAGCGTCAAGTGGTTCCctgaaatacaaatgcaaagtaTGCCCCAAAGCATTTCCGACGGTGTCACGCCTTAAATCTCACCAGCTAACGCATAGCCATTTACCTAAGTTCTATTGCGATCAGTGCACATATTATTCGCTGCGCAGCGCCGATCTCATCCAGCATTATACGAGCGAGCATAATATATGCATTAGCGATACGAAAGCTAGTCAAGTGGAGAAGTCACCAATGATGTCGACAATGTTAACGGATCGCAATCGCATCTTCTCATGCGATATGTGTCTGTTTGAGACGCCGAGCGGCGGTCAGCTCCGCTCGCATTACAGTGATAAGCATCTCATTGTCCCCAGTGAGATACAGCTGCGGCCCAGCTGGATCAGGGATCAGCAGGATGACAATGCGAAGCTGAAAAGTGGCGACGGAAACACACAACCAGACATTCCGCTGGGCATTAAATATCCAACCTTGACTCCttgtgccacaacaacaagcgtGCAACAGTCGcaggcaataacaacagcggcaGTGACTTCCACGGCTGACATCAACGTTGTCGTGGATGCCAGCTCATTATTCTATGCGGCAAATTCTAACGAAAATAtagcaacaacggcagcagcaacgggtgcatcagcaacaacaacatcgggAATAGATTCAAGTACAATTGCAATATTTCCTGAGCAATGTCAGTCAACAACAtcaaaggcagcaacaacaaatcaacagGAGGCAAGCAGTCAGGCAgtgactacaacaacagcaacaaatccCAATACTAGCACATTTGGTGATATGCAGGAGTTTATAGATAATACAGATGTGGCAGCTATATGCACAATACCCGCCGACGATATGCCTGTGGATGGCGATGATATCGTcatcgataataataatattagtcTGGATTTTGATGCTGAAAAGCTATTTGAGGAATTTGAAGATGTCGAAGTTGGCGAAGAagttgacgatgacgacgctGACGAGGatgacgaggatgaggatgaggacgagGCGGACAATGATGATGAGAATGATAACAATAATGCGGCTGCAGATCAAAATCTCTTACTGACCAgtgacgatgacgatgtgGATGACTTTGACGACGAACAATCGAAGCATCTGCAGAAACCCTATTGCAtcttttgcaataaaaagttTACCAGCCAATACAAGTTCGAGAATCACATGTTTCTGCATCGCGGTTTGGCACCCTATCGCTGTGAACTGTGCACCAATCTGTACAATATGAAACGCCTGCTTATACGACACTATAAAACAGTTCACAAAAAGATGCCCACGCGTGACATGGTGCAGGCCAAGGGCGACAAGGTAGCCGTGCCGTGTACGGCTATCgaaaagataaatataaatgcaggCAAAAatccTTTGCTGATGTGCGCCAAGTGTCCCTTTGAATGCGAGCTGGATGTGGATATGCGCAAGCATTTAAATGCCCATCATGGCATCAACGATGGCGTTTCCATGCATGCCAACGAAGTGTTTATTATACGCAAACTGCCTTATGAGTGTCCACGCTGTATTCGTTCATTTGCGGCAAAGCGAACGTTGACACGCCACTTGCAGCGTAGCCATTTGGTGGATACAATCATTGAGATGCAGGCGCTGCAATTGACAACCAGTTCGGCAGCAACGACAaccacagcgacaacaacaaccacattgCCAAACAATGCCAGGGATGGCAGTAAAACCACAGCACATTCGGTTGAAGAGTCTTCCAACAATGGCAATGTCGATGTCGATCTTGGCGATGGCGGCGATGGAAAATGCGAAGAGCAAGTGGTTGGCAAAGATGCAGgatcagaaattaaaaatgtcgATACAGAAGTGGATATAAAAGGCACAATAAAAGAAGTTATAAATGCGGTAGGAACAACAGACGTAAGAGAAGCAACAACTGTAGCAGAACCAACACCAAAAACACCTACAAAAGCAGAAGCTTctgacacaacaacaaccacaacagatTTTACACCAACACCACAACAGTCTGCAGTCTCAACGCTTTTTCCAACGCCCACGCCTTTTGACTTTGATCTTGACTTTATTGGCAacgtggcacatgccacaacgcttaagaacaacaacgatgATAGCTTCAATGTGGCATCTCTGCCTCCGCCTCTGCTGCTAAATGGCAGCGATAAGTTGCTGACTGCCGCACTGGAGCCGTCGCCCGTTAAGGATTTGCGTACACGTCTGCCCCGTACCCCCATCTATGTGTGCAAGCAATGCAATCAAACGTTCGACGAGCTGGCCAAGCTGTTGCAGCACGAGCTGCAACAACATTCCAGTGGCACAATGTCCACGCCACGCAGCAGCCATCAGCATCAGTGCAAGATCTGTAATGCCTCCTATCGCACTGTGACCCTGCTCAATTATCACATGAAGCGACATACGCCGGTGAAAGTACCCTGCAAGGAGTTTCAAGTAAGCACGGAGTTGGAACAACAAGTGCCGTCCAATCATCGTGGCAATAGTAGTCCACTCAAATGTGGCATCGATGGATGTAGGAAAACATTCAATTACAAGCATCATTTGAAGCGACATCAGACCGCATCGCATACGCCTGTGCAATACATTTGTCCGGTGTGCGGACGCGATTTGCTAACCAGTCTGTATCTGAGGAATCACATGTCCATGCACCGGGGCACCCACTCCTACAAGTGCCCCAAGTGCGTGCGCACCTATATGCGCCGTAATCCTTTCCGTCGACATGCGTTGCGGGAGCACAAATGGGAATTGACGGATGCGGAAgttgataaaatatattgtgaaAATGATTCAACGCCATCAATCATGTTGCGCGATTTGCGGTGA
- Protein Sequence
- MAHKRLKAADMEINYKFACRCCLKSEAEFFKLDSLIDCSNEDANGNDNDAASSKKLPLLRLLLFCMRTENLPELPQYICVECRKSLQIAYYFIQNGLRAHEILCRKLCPGKLQTRSRINGQHLAQRMEAKAGTASLDTHRESPLKCKICGEVIHNRLELNHHLRMHSEYRHQCKLCNFVTHKHRPLLEHYRKSHGLTTAQIENQLKIRRSVQATATTSTKAIAAATTETPAAAADDDGQVKVCTMEDMELLIPTVLTPEDFTHPQLYADQLRDIEQQLTSSSLRVANTTAASTEPVTANASGSSANMSIGAEFLVMPDGSLQQVNDGGVVFEYIDDSKSAAGTTTTTSTSTNVTLESLLSDSKTDLTYDAMDIDLSHMVVDNALPQITVKPKARPAPASSGSLKYKCKVCPKAFPTVSRLKSHQLTHSHLPKFYCDQCTYYSLRSADLIQHYTSEHNICISDTKASQVEKSPMMSTMLTDRNRIFSCDMCLFETPSGGQLRSHYSDKHLIVPSEIQLRPSWIRDQQDDNAKLKSGDGNTQPDIPLGIKYPTLTPCATTTSVQQSQAITTAAVTSTADINVVVDASSLFYAANSNENIATTAAATGASATTTSGIDSSTIAIFPEQCQSTTSKAATTNQQEASSQAVTTTTATNPNTSTFGDMQEFIDNTDVAAICTIPADDMPVDGDDIVIDNNNISLDFDAEKLFEEFEDVEVGEEVDDDDADEDDEDEDEDEADNDDENDNNNAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIFCNKKFTSQYKFENHMFLHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKKMPTRDMVQAKGDKVAVPCTAIEKININAGKNPLLMCAKCPFECELDVDMRKHLNAHHGINDGVSMHANEVFIIRKLPYECPRCIRSFAAKRTLTRHLQRSHLVDTIIEMQALQLTTSSAATTTTATTTTTLPNNARDGSKTTAHSVEESSNNGNVDVDLGDGGDGKCEEQVVGKDAGSEIKNVDTEVDIKGTIKEVINAVGTTDVREATTVAEPTPKTPTKAEASDTTTTTTDFTPTPQQSAVSTLFPTPTPFDFDLDFIGNVAHATTLKNNNDDSFNVASLPPPLLLNGSDKLLTAALEPSPVKDLRTRLPRTPIYVCKQCNQTFDELAKLLQHELQQHSSGTMSTPRSSHQHQCKICNASYRTVTLLNYHMKRHTPVKVPCKEFQVSTELEQQVPSNHRGNSSPLKCGIDGCRKTFNYKHHLKRHQTASHTPVQYICPVCGRDLLTSLYLRNHMSMHRGTHSYKCPKCVRTYMRRNPFRRHALREHKWELTDAEVDKIYCENDSTPSIMLRDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00557462;
- 90% Identity
- iTF_00522491;
- 80% Identity
- -