Basic Information

Insect: Drosophila mimica
Gene Symbol: -
Assembly: GCA_037043585.1
Location: JBAMBE010000361.1:5211429-5213764[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3 1.9e+02 2.7 0.2 1 10 41 50 41 58 0.80

2 11 6.6 4.3e+02 1.7 1.8 1 19 155 173 155 175 0.87

3 11 0.003 0.2 12.2 5.8 2 23 215 236 214 236 0.97

4 11 0.0005 0.032 14.6 1.5 1 23 262 283 262 283 0.97

5 11 0.001 0.066 13.7 1.4 1 23 289 311 289 311 0.95

6 11 0.00017 0.011 16.1 0.3 1 23 336 358 336 358 0.97

7 11 2e-07 1.3e-05 25.3 0.8 1 23 364 386 364 386 0.99

8 11 0.0025 0.16 12.4 6.6 1 23 392 414 392 414 0.98

9 11 7.9e-07 5.1e-05 23.4 0.4 1 23 420 442 420 442 0.98

10 11 2.1e-05 0.0014 18.9 0.1 1 23 446 468 446 468 0.99

11 11 0.0023 0.15 12.5 0.0 3 23 492 513 490 513 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3	1.9e+02	2.7	0.2	1	10	41	50	41	58	0.80
2	11	6.6	4.3e+02	1.7	1.8	1	19	155	173	155	175	0.87
3	11	0.003	0.2	12.2	5.8	2	23	215	236	214	236	0.97
4	11	0.0005	0.032	14.6	1.5	1	23	262	283	262	283	0.97
5	11	0.001	0.066	13.7	1.4	1	23	289	311	289	311	0.95
6	11	0.00017	0.011	16.1	0.3	1	23	336	358	336	358	0.97
7	11	2e-07	1.3e-05	25.3	0.8	1	23	364	386	364	386	0.99
8	11	0.0025	0.16	12.4	6.6	1	23	392	414	392	414	0.98
9	11	7.9e-07	5.1e-05	23.4	0.4	1	23	420	442	420	442	0.98
10	11	2.1e-05	0.0014	18.9	0.1	1	23	446	468	446	468	0.99
11	11	0.0023	0.15	12.5	0.0	3	23	492	513	490	513	0.96

Sequence Information

Coding Sequence: ATGTCAGCAAACAGTGGAAAAAAGGCTgaggcgacaacaacagcgctGCAATCGCACGTGGATGCCAAAAGCCAAAGTAATATTGatcattttataattgatACGTGTGCGGATGAACTATATTATTGTGAGGATTGTGGCAATGACTACGACAGCATCGAGGCGTACAACAATGCGCACAGTGGCCTCGGCAGTTGCGCAGGCGCCGTCGAAGCCTGTTCCAAAGTTTCTCTTCATGCCGTCGAGATTAAAAATGAAGCGGACGTCGAAGATGATCGAGTGGATGTTGATTCCCTTATTCTCGAGGATGATCTAATTGAGGAAGTCGACGATGCAAGTGAACCCCAGCTTTGGGAGGTGctcgatgaggatgaggaacTGCTGCCAGCCGAAGTCGAGGACGAGGCGCATGCTGAAGCTGAGGCTGAGGttgaggcagaggcagagcaaAAGTGTGAGCGTTACTTTTGCTTCGATTGCCACAGTATATTCGTGACACTTGAGAGTGCCGAGGAGCACAGCTGCCCCCAGGCAgaagcaacaactacaattgGTGGCACACAGAGCAATGCCAAAACGCAGACGCCTGTGCGTCGGAAGGGGGCAACGGCCACAGCAGCAAGTAGCAATAATACGGCCActgtttgccacatttgcaaAACCAAATTTAGTTCACCCAAATGTCTCAAGTTTCACATGCGCATCCACAACAAGCATGCCTCCAAGTCCATACAGGATGCATTGCCTGTTGGCGCTCATCAGCAGTACAGCAAACTGGATCAATTTTATTGCGAAATCTGCAACAAGAGCTTCGAAAAAAACCTTTTAACGGTGCACAAACAGATGCATCAGAGCCATCAACAGTTTCTGTGCGGCACTTGCAACCGCCAATTCGATAATCTAACCAACTATAAGATGCATCTGAAGATCCATGAACGCCACGcgttgaacaacaaaaacaagcccAGTAAAAGGCCGGCCAATGTGGACAAGGATAAGCCAGGATTCGCCTGCCAGTATTGCGAGCGAGTCTTCCCGCGTCCCTATGAGAAGGTGAAGCACGAGCGGGTTCACACCGGCGAGAAGCCCTACAGCTGTGAGGTGTGCGGCAGAACCTTTCGTGTTTCCTACTCCCTCACGCTCCACCTGCGCACGCATACAAATATACGGCCGTATGTGTGCACCACGTGCAATAAACGCTTCAAGTCGCATACGGTTTACTCGCACCATTTGCGCATTCACAGCTCGGAGCGTCAGTATGTTTGTGATATCTGTCCGAAATCCTTTCGCACTTCCGTGCAGCTTTACGCCCACAAGAATAGTCACACCAAACCGTATCAGTGCGCCGTCTGCAATCGTCCCTTTGCCTCACTGTACGCCGTCAAGGCACACATGTCCACCCACAAAGCAAGCGATCCGAATAGCGCCGGCAAACAGGTTACCAAGAGCCAACAGATGTCCAATAAATATTGGTGTGTTACCTGCGGTGCAGAATACGCACGTCCCTTTGCGCTCCGCCTGCACATGAAGTCTGCACACGGGCATCAAGATGATGCGGATACACGTTTTGCAAAAATCGCACCAACAGTTGATGACGATGAGATTATTGTCCCTGATACGGAGACGGCGGTGCTTATAGCAGCGGCTAAGGCGGATTCAGCGTATCTATGTGCTGCGGCCAATGAAGTGGATATTATGGGTGCGGTGCCCAAATACGAGGAATGCATTGAAGTATCATCAGATGCGTTCGATGTGAAAACCTTTCACAACGAGGAGATCATCACCGACTGGCTTAAGTAG
Protein Sequence: MSANSGKKAEATTTALQSHVDAKSQSNIDHFIIDTCADELYYCEDCGNDYDSIEAYNNAHSGLGSCAGAVEACSKVSLHAVEIKNEADVEDDRVDVDSLILEDDLIEEVDDASEPQLWEVLDEDEELLPAEVEDEAHAEAEAEVEAEAEQKCERYFCFDCHSIFVTLESAEEHSCPQAEATTTIGGTQSNAKTQTPVRRKGATATAASSNNTATVCHICKTKFSSPKCLKFHMRIHNKHASKSIQDALPVGAHQQYSKLDQFYCEICNKSFEKNLLTVHKQMHQSHQQFLCGTCNRQFDNLTNYKMHLKIHERHALNNKNKPSKRPANVDKDKPGFACQYCERVFPRPYEKVKHERVHTGEKPYSCEVCGRTFRVSYSLTLHLRTHTNIRPYVCTTCNKRFKSHTVYSHHLRIHSSERQYVCDICPKSFRTSVQLYAHKNSHTKPYQCAVCNRPFASLYAVKAHMSTHKASDPNSAGKQVTKSQQMSNKYWCVTCGAEYARPFALRLHMKSAHGHQDDADTRFAKIAPTVDDDEIIVPDTETAVLIAAAKADSAYLCAAANEVDIMGAVPKYEECIEVSSDAFDVKTFHNEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00500492;
90% Identity: iTF_00522385; iTF_00525328;
80% Identity: -