Dmim002582.1
Basic Information
- Insect
- Drosophila mimetica
- Gene Symbol
- Aef1_2
- Assembly
- GCA_037075245.1
- Location
- JBAMCH010000004.1:23638007-23639024[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0063 42 4.5 0.1 21 48 188 215 183 219 0.86 2 4 2.6e-05 0.17 12.2 0.0 21 52 216 247 214 248 0.89 3 4 0.028 1.8e+02 2.5 0.1 21 48 244 271 242 275 0.85 4 4 7.5e-05 0.5 10.7 0.1 21 47 272 298 268 305 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGCCTGCCCCATGCCCATGCCGCTGCCACGGCGATGAGCAGCAATTGCGATATCGTCATTGTGGCCGCCCAGCCCCAAACCACCATAGCGAATAGTAATAGCAATGAGACGGTCACCCAGGCCACGCATCCCCATCCCGCTCACATGGCGGCggtccagcagcagcagcagcaacaacaacaacagcagcaacatcatcagcagcaacagcagcagtcgAGCGGACCACCCTCTGTGCCGCCGCCACCAACGGAAATCCCCTTGCCCTTCCAAATGCACTTGAGCGGGATCTCGGCGGAGGCGCACAGTGCCGCCCAAGCAGCAGCGATGGCCGCTGCCCAGGCTGCAGCCGCTCAGGCCGCAGCGGCGGAGCAACAACAGCCGGCAGTGCCGCCTCCACCGCCACCACACCTGACGCACCTGACCACGCACAGTCCGACGACGACGATCCCCAGCGATCATTACCTGGCCAACGGACATGGCGAACATCCCGGCGAGGGTGCACTGCCCTccagcggaggaggaggtagTGGAGCTGTCCGCGAGCCGGAGAAACCCTTCCACTGCACCGTCTGCGATCGTCGCTTCCGGCAGCTGAGCACACTGACCAACCACGTGAAGATCCATACCGGCGAGAAGCCCTACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACGAACCATCTGAAGATCCATACGGGCGAGAAGCCCTACAACTGCAACTATTGTCCCAAGCATTTCCGTCAGCTGAGCACTCTGGCCAACCATGTGAAGATCCACACGGGTGAAAAGCCTTTCGAGTGTGTCATCTGCAAGAAACAGTTCCGGCAGTCCAGCACACTCAACAACCACATAAAGATCCACGTCATGGACAAGGTCTACGTTCCTGTTAAGATCAaaacggaggaggaggaggggtgA
- Protein Sequence
- MMHIKSLPHAHAAATAMSSNCDIVIVAAQPQTTIANSNSNETVTQATHPHPAHMAAVQQQQQQQQQQQQHHQQQQQQSSGPPSVPPPPTEIPLPFQMHLSGISAEAHSAAQAAAMAAAQAAAAQAAAAEQQQPAVPPPPPPHLTHLTTHSPTTTIPSDHYLANGHGEHPGEGALPSSGGGGSGAVREPEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00613017;
- 90% Identity
- iTF_00548305;
- 80% Identity
- iTF_00548305;