Dmim017829.1
Basic Information
- Insect
- Drosophila mimetica
- Gene Symbol
- -
- Assembly
- GCA_037075245.1
- Location
- JBAMCH010000026.1:4298624-4304520[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.82 10.4 0.3 1 23 1302 1325 1302 1325 0.95 2 13 7.6 5.9e+02 1.4 0.2 1 23 1474 1496 1474 1496 0.91 3 13 0.00017 0.013 16.1 2.7 2 23 1499 1520 1499 1520 0.97 4 13 6.6e-05 0.0051 17.4 0.2 3 23 1528 1548 1526 1548 0.98 5 13 5.5e-07 4.2e-05 23.9 4.1 2 23 1555 1576 1554 1576 0.97 6 13 5.2 4e+02 1.9 0.4 5 23 1589 1607 1587 1607 0.96 7 13 1.3 99 3.9 5.4 3 23 1614 1635 1612 1635 0.93 8 13 0.14 11 6.9 0.2 2 23 1646 1666 1645 1666 0.96 9 13 0.00014 0.011 16.3 0.3 1 19 1672 1690 1672 1694 0.95 10 13 3.3e-05 0.0025 18.3 0.4 1 23 1702 1724 1702 1724 0.98 11 13 9.8e-05 0.0076 16.8 7.6 1 23 1730 1752 1730 1753 0.96 12 13 0.00021 0.016 15.8 6.5 1 23 1758 1780 1758 1780 0.98 13 13 0.0025 0.2 12.4 6.1 1 23 1786 1808 1786 1809 0.96
Sequence Information
- Coding Sequence
- ATGGTCGACAACAGTGTCCAGTGCCCCGTGTGCACATTGTACCTGCATGCGGGCATGAATCTCTCCGATCACTTGGAGACCCATCCCAAGGAGCAGGTGATCAAGGCGCTGGTGCAGATGACGATCGTCGGGAGCGGTGGCAACAGCATGGGCAGTGTTCTGGCTGCCGCCATGCTGGCAGGAGGATCTGGAGGTGGACAGAGCGGTGGCGAAGCCAGCAGTGCGGCGCCTGACGAAAAACCAGCCGTCTTATCACCGCCTTCTGGTGGCGATGTCAAACCAGTTGTGGCCAATACCAtatcagcagcaccagcagtcCCAGCGCCTGTGGTGCCGCCAGCACCGCCACCGCTCTCATCCTCCCTCGTGGCAGCCTGCTCCAACGGAGCCGCCTCCTCCACGACCAGCTCCACACCCACCTCCCCCTCcgcaagcagcagcaacagcagcaaaccGAGTAATCCACCGATGAAAGCACTGAAATGCGCACCGCCCACGACTGAGGCGCGAGCCAACACATCCGCACATCCCACCACAAGCAGTGTGTCCACCTTGTACCAGCCAGCGCAGGTCACCCCGGACTATCGCttcaaccagcagcagcagccacagacGACGGGCTTTGGGCGTGGTGTTACCACCCCGGCAACCACTCTGGTGATACCGCAGGTGCCTCAGCAGCACTTCCTCGCCGGCCACCAGCAGCAATCCCACTTTacacatcagcagcagccgccgcagcaacagcaacaacaacagcaacagcagcagcctgCCCTGAAGTTCAGCTATGCCACAGCTTTGCCCCCACCGCCACCGTTGCAGCTATttacgcagcagcagcagcaacatccgaCAGTTGCCCCTTCGCAATCGCAGCAGCAATCGCACCAGAAACCACCTCCCGCCTACGGAGCCGCCATCAGTCAAATACGATCTCAGCACAACCAAAAcaagcagcagccacagcccCAAAGCGTGGCCATGCAGCATAACCTAGCCCTGGCACCACCGACAACAGCAGCACCGGCTTCAACCGCacttgcaactgcagctggcAAGCAGCCGCCCAGCAAACCGCATACGGAAGTATTCCTGAATcccccaccaccgccaccggcACAGCAACAGGCGCAGCAGATTCACAATTTGGTGCAGCATCAGCAGAATCAGGGCCAGCTCCATCAGCatccccaccaccaccagcagcagagTCTGCCGATGACCGCTTCGTCCTCCTCTAGattgcagcaacagcatcacCAGCAGCCACCGAGCTTGCAGGTCTACGGATCAGGTGTCAGCAGTAGTTCCTGCAGTTCCTCCAACAACGCCTCCACCTCGGCATCTGGACATCGGGTGAATCGTCAGACCAACTCGCCCTTTGGAGCGCTGCTTAATGCTGCGGCGGCTGCGGCATGCGCCTCGCCGgcctcctccaccgcctcTTCATCGGTGCTGCGCTACGCGGAATCACCGGTGGCCCATTACTTGGAACGTGAAAACGGTGACTTCATTGTCCAGGAGACGCCAAAGCACATTGTGGAGTGTGTGGAGAAGGAGGACGGAGAGTTCTCCGTGATCGAGCGCATTTACCAATCCCCGCCGAGCGTTTTGCACATACACGATGACGATGAGGATGAagaggacgacgaggaggaagACGAGCATGAAGCTCCGCCGGAGGAGGACGACGGGGACGATGAGCGGGAGGAGAACAGTCACAGCCGTAATGTGAGCAAGACAACGAAAAAGGCTCGCAAGACGAAGCCCAAGCGGAGCTCCAAGCGGGTCTCGGACGAGGAGGAGTTCATGAGCCTGAGCAGCGGATGCGAGAGTGAGGTGGAAAGAGAGCGCAAGCAGGAGCAGCCGAATGCAGCGGCTGCGCTGCCGCCTCCACTGTGCACGGCTCCGTCGACGAGCGCCGCTGGTGCTTTCGCCTCATCCTCCAATCTGGCGGATAATCATTCCAATTCGGCTTCCAACTCCGCCTCCAATTCAaactccaccaccaccaagtCCAAGAAGAATCGAATTACCGTGCTCAGCGATGTGCCCCTCAATATGAACGAGTATCTCGATTTGATGGGCAACATAGTGGCCTCCAGTCGCATTGGTGCCGGTCGTCCCTTTGCCGCTGTGGCACCCATACCACTCGTCAAGGTTGAGAAGGAAGAGCCTTTGGATGACTACGATAATGTGGCAGtgccagtggcagtggcagctcCTTCCGAACTGGAGCAGAAGCCCAGCTTGGAGCACGGCACCACCAGCGTCATTCGGATGGCAAGCACCGCTGCCGCGACGTCGTCTGCGACGGCGACCGAAGTGTCTGCCGAGGATCTCACCCAGCCGCCGACCATGAAAGTCGAGGTGGAGCCCAACACCACACTGTTGCCGCAGCGCTTCTCCACGCCCGCACAGCAGCGCGGGCCCAAGAAATTAGTCATCAAACCAAAAGCGACAGCACCAGCGACAGCGACGACAACGAAAAAGACTGACACCCCATCTTCCTCCAGCAGCAACCCATCCATATCAAGAGACAGAGATCTGGTGCAGGTGAAGAGTGAGACCCTGGAGGCTCCAGCGCCcagcagtagcagtagcagcagcattCTGGAGAAGCACCTGACCACCAGTCGCAAACTGCTTCACCATCACTCGGCGGTGAACGATGACGACGCCCGGGTGCTGTTGGAGTTTGCCAACTCAAAGCAGCCGCCACCACTGGCCGCTTCCAGCACCACGTTCGTAGTGAATGCCAGTACCAGCGGCTTCCCCTCGGCGGGATCGGTTTTCGCCAGCAGCAGTAGTGGCTGCTCCAAAGCACCGGCCAAGCCGGGCGATGAGTACATCCTGCCGGACAACAacgtggatgtggatgagATTGTGATATCCTCGTCGTCTTCCTATACCTCCTCAGCGGCCCAGGTGCAGGCCACGCTGCAGCCGCCGGACTTTAACTTTCTGTACCACCAGAGCACAACTACGGCTACGACGGCCGCCTATTTCAATCCCTTCtccaggcagcagcaacatcagcagcagcacaaccagcaccagcagcatgGCGTTAGCGATGCCACCAATGCGGCCACCTTGGCTTCGTCGTCCAGTAATTCAATGGATCACGACTCAATGAATGCAACATTCCGGGTGGCCAAGACACAGTCGCTGCAGTGGTACCACCAGGAGCCGGAACATGATCCGCAGAACCAGGTTGGAGTGGAGTCGGGAACAGCCACACCCTCCAATCAAAGCCAGGATATGGTCAGCCACCAGCCCACCAATTTCAACGCCGCTCTGGCGGCCGTCGATGGCTGCAGCGTTGCCCTGGATGAGGATGCCAAGTATCTGGACCTGGACGCCTGCAAGCGGGAGCAGCTGAGCAGCAGTAGCAACCTTCCCTCAGCCTCCGCATCCACCACGTCGTCTTCATTTGCCGGCGCCGGCACGGAAAGCAGTTTGGTTGGTGGCCTGAACATCCGTACGGATGAGAAGATGCCAGCGAAGGGTGAAATTTCCGAGCAGGAGAGCAACTGCGACATTGAGAACTCCTGGAGTGAGTCGGTTTACGGGGATATTTCGCAGCGGTATTTCAGGAACCAGTTTTCTGGAGGCTACAACCCCGACTGGCGACAGGATTACTACCCGGCTCAGGATCTCAGCGCCCAGCAGAGGGAGCAAAAACGCTTCGACTTTAATGCGGTTGACGATGAGGCTTCATCCAGCTCAAGAAAGAGTCACCTAACAGATGTTGTCCCAACTGCGGCTACCTCCTCCGCGTCTACGTCATCGGCTTTGCTGGCGGGTCCACCAATTGCTTCGACATCGCGGGCTGCCGCAGAGGCGGCAGCGGAGGCGGCCGCTCTCGCTCAACGAAAGCCGCAGCGCCGCAAGCTCTACAAGTGTCCCCACTGCGAGGCGATCTTCGAGAAGCTCAAGGAACGCAATGCGCACATGATTGGCGAGCACAACTACGTGCGTCAGAACCGCCGACTCATCTGCACTCAGCCGCAGGTCAGCTCCTCGATgctgccgccgcagcagcagatgaTCCTGCAGGCAGGCGAAGGTGTTCATGAGGATTCCAAGGATGGCATTGTCAAAATAAAGCAGGAGCAGTGCCAGGAGAAGCAGGATGTGGAGCACATGCACGCTCATTCCGAATTGCTGGCGGATGTCAAGGACTCGGAGCTAATGGGCATCGGTGGTGACGGCGACGGAGATATGGACGGCGATATTAAGCCACCCAGCCAGTTGGATGAGAAGCCCACGCTGCCGCCGCTGGCCATGACAACGCCGGCGGCCAAATTGGCTGCCTTGTACCGCATGCTCATCGCCTACAACGAGTCCAAGCTCGGCCAGGAGCGCAACAATCTCAGCGAGCTGGAGCAGAAGGCCATGGAGAAGTCCATCTTTCTGTGCTACGTTTGCCGCACGGACTTCCCGTCCGTAAAGCTCTACGATGCCCATCTCACCGAGCATCCGGCTGAGTGCTTCACCTGCGGCAAGAAGTTCTACCGCTGGAAGAACTTCTCATTGCATCTGAAACGACATTTGGGCTGGAAAGAGTTCGGATGCTACGTCTGCGATAAGAAGTTCGTGGTGCGCAGCGCTCTCGTTGAGCACATGCGGATGCACACGGGCCAAACGCCGCTCAAATGCAAGATATGCGGCAAAAAGTTCAAGCGCTACTCGAATCTGACGCAGCACCGCAAGCGGCACACTAAGATGATGGTGCGGAAGAAGGAGTATGTGTGCCACTGCGGCGAAGTGTTGCCCTCAAAGGCGCGCTTCCTGTGGCACAAGGAGACGCACGACCTGAAGCCCAAATGCTGTCCGTACTGCTGCGATCGGTTCGTGCACGCCAACTCACTGCGCCGACATATCCGACTGGCACACTCCGACAAGTTCGACTACGCCGAACCGATGGAGTGCCCCATGTGCAAGCAGATCTTCGCCAAGACCTCCATCAAGGCGCACATGGCGACGCACTCGACGGAACCCCAATACGATTGCGCCATTTGCAGCAAGAGCTTCTCCACCAAATGGAATCTCAAGATCCACTCCTGGGTGCATGCCAACCGGACGGCCAAGCCCTTCAAGTGCGAGTACTGCCCGAAGGCTTTCGTGAGAGAGCTGGACTTTAAGAACCACATCAACGCGCACAAGCAGATCAAGCCGTATACGTGTGAGTACTGCGGCTGCAAGTTCATCCGCAAGTACAACTACATGCGGCATCGGCGCGAGCATCACGGCACCAAGAAGTTCACCTGCGACCAGTGCGACAAGTCCTTCCATCGACACTACTATCTGATCGAGCACCGGCGCATGCATACCGGAGAGCGGCCATTTACCTGTACGATCTGTGGCAAGAGCTCCACCACGAAGACCAACCATAACAAGCATCTAAAGATCCACCATTCGCGCGATCCGTTCACCGTGGAGGCCTAA
- Protein Sequence
- MVDNSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGSGGNSMGSVLAAAMLAGGSGGGQSGGEASSAAPDEKPAVLSPPSGGDVKPVVANTISAAPAVPAPVVPPAPPPLSSSLVAACSNGAASSTTSSTPTSPSASSSNSSKPSNPPMKALKCAPPTTEARANTSAHPTTSSVSTLYQPAQVTPDYRFNQQQQPQTTGFGRGVTTPATTLVIPQVPQQHFLAGHQQQSHFTHQQQPPQQQQQQQQQQQPALKFSYATALPPPPPLQLFTQQQQQHPTVAPSQSQQQSHQKPPPAYGAAISQIRSQHNQNKQQPQPQSVAMQHNLALAPPTTAAPASTALATAAGKQPPSKPHTEVFLNPPPPPPAQQQAQQIHNLVQHQQNQGQLHQHPHHHQQQSLPMTASSSSRLQQQHHQQPPSLQVYGSGVSSSSCSSSNNASTSASGHRVNRQTNSPFGALLNAAAAAACASPASSTASSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDEEDDEEEDEHEAPPEEDDGDDEREENSHSRNVSKTTKKARKTKPKRSSKRVSDEEEFMSLSSGCESEVERERKQEQPNAAAALPPPLCTAPSTSAAGAFASSSNLADNHSNSASNSASNSNSTTTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGAGRPFAAVAPIPLVKVEKEEPLDDYDNVAVPVAVAAPSELEQKPSLEHGTTSVIRMASTAAATSSATATEVSAEDLTQPPTMKVEVEPNTTLLPQRFSTPAQQRGPKKLVIKPKATAPATATTTKKTDTPSSSSSNPSISRDRDLVQVKSETLEAPAPSSSSSSSILEKHLTTSRKLLHHHSAVNDDDARVLLEFANSKQPPPLAASSTTFVVNASTSGFPSAGSVFASSSSGCSKAPAKPGDEYILPDNNVDVDEIVISSSSSYTSSAAQVQATLQPPDFNFLYHQSTTTATTAAYFNPFSRQQQHQQQHNQHQQHGVSDATNAATLASSSSNSMDHDSMNATFRVAKTQSLQWYHQEPEHDPQNQVGVESGTATPSNQSQDMVSHQPTNFNAALAAVDGCSVALDEDAKYLDLDACKREQLSSSSNLPSASASTTSSSFAGAGTESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSESVYGDISQRYFRNQFSGGYNPDWRQDYYPAQDLSAQQREQKRFDFNAVDDEASSSSRKSHLTDVVPTAATSSASTSSALLAGPPIASTSRAAAEAAAEAAALAQRKPQRRKLYKCPHCEAIFEKLKERNAHMIGEHNYVRQNRRLICTQPQVSSSMLPPQQQMILQAGEGVHEDSKDGIVKIKQEQCQEKQDVEHMHAHSELLADVKDSELMGIGGDGDGDMDGDIKPPSQLDEKPTLPPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTEPQYDCAICSKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKSFHRHYYLIEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00529734;
- 90% Identity
- iTF_00529734;
- 80% Identity
- -