Dmic002205.1
Basic Information
- Insect
- Drosophila micromelanica
- Gene Symbol
- -
- Assembly
- GCA_004143905.1
- Location
- SCDX01000699.1:109010-110737[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-16 9.2e-13 47.5 0.0 2 45 368 411 367 411 0.95 2 3 0.04 88 2.7 0.0 28 37 441 450 440 455 0.90 3 3 4.2e-19 9.1e-16 57.1 0.0 2 41 477 516 476 518 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTGGACCAGCAGAGCAACAATCAGCAATGCGAGGTCTTGCTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTCTTCGTGCTGAGCACTTGCAGCGATCTGATGCGGAATTTGTTGGTCGATTTGCCCGCCGGCCAGGAGGCAACCGTCATCCTGCCCGATATCCGGGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGCGAAACCAGCTTACCCTCTTCCCTGCTCACCGAGTTTCTGGAGGCCATCAATCTGTTGGGCATCAAGTCGGCCATTAGCTTCGAAACCAATCCCACCGCCGTGACCACCTCAAATGTTATCAGCGGTGCCATGGCTGTCGAGGCGGCCAAATCAATAAGCGGCTTACACATCGCGAATACAGCCCTcatggaggaggaggaggaggaagaagAACCTGGCGCTGTGGTCGGTAAATTGGAGGTGGGAACTGCTGTGCTCGCCAATGCCCAACACCAGCACCACGAACATGATGGCCGAACGTTAGAATTCCTGGATATGTACGGAGATCAGCCCAAAATCACGTATTCCATTGAGCACATGGGCGGCACCACCAGCGGAAACCAATATATATTAACGGAGAACACGGGAACATTTACCATCACCCAGTCTGCATCATCTGTGGCCAAGTTGGGTGTATCGGGGACGTCGGCTGTTGTGGAAGCTGTGGCCAGCAATGAGCTGGGGGACGAGGATGTGGAGGCTGATGTAACTGACGAGCACGACGAATCCGAGTCTCAGTTAATCGAGGAGGAGTATGTTGCCTCCGCAGATCCTCTAATAGAAATGACCGCGGATGCGGATGGGGATGTTGATATGAACGAAGATGGAATGCACGAAGGCGATGCCGGGGACGAAGAAGAGGATGACGAACTCCTGGATGTCAAACCACACAAAGTTCAGCTAGATATGaagatgttaaaaacaaagtcTCGCCAGCGTTCGCCTTCATCGAAGGTTACAAAAAGGGCAATGACGAAGCAACATATTCAGCAGGCTGCACTCAAAAAGGAAATGAAGGACGATATCAATGACGCCCTTGATCTGGCCGCTGCGGCAGTGCTCCATGAAGGGATCAGCCTCCAAAAGGCCGCCGATCGTTTCGACATATCGAAAACCGTGCTATGGCGACGTGTACGCTCCAATCCAGCCTACATGCGGATAAAGCGGGAGAAGCCATCGCTATCGGAGGCATACGAGCGCTTGAAGAGCGGCGACTCGCTGAAGAGCATTAGCCAGGATCTGCACATACCCATGTCAACGCTGCACAGGCACAAAGTACGGCTGGCGGCACAAGGTCGTCTGCCCGATTTCGTTTCCTGCCGGCGGCGGGACAGCACCCCGAAAGACGAGCTGCGCGACAAGCTGGCCAAGGCGGTGCACGCTTGCCTAAACGATGGCATGTCCCAAAACCATGCGGCAAATCTCTTCGAAATTCCCAAGAGCACGCTCTGGCGGCACTTGCAGCGTCGCGTTAACGAGGCGGAGCGTAAAGTGAAGGAGGAACAAGAGGAAGAAGACGATGAAGACNNNNNtatacacatacatacatacatacattcAAATAACTATGCCTTAAGTTAA
- Protein Sequence
- MGHSSTIMDIQRVLLDQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSSLLTEFLEAINLLGIKSAISFETNPTAVTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEEEPGAVVGKLEVGTAVLANAQHQHHEHDGRTLEFLDMYGDQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVAKLGVSGTSAVVEAVASNELGDEDVEADVTDEHDESESQLIEEEYVASADPLIEMTADADGDVDMNEDGMHEGDAGDEEEDDELLDVKPHKVQLDMKMLKTKSRQRSPSSKVTKRAMTKQHIQQAALKKEMKDDINDALDLAAAAVLHEGISLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKSGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACLNDGMSQNHAANLFEIPKSTLWRHLQRRVNEAERKVKEEQEEEDDEDXXIHIHTYIHSNNYALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00530367;
- 80% Identity
- iTF_00547459;